BLASTX nr result
ID: Coptis23_contig00020229
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Coptis23_contig00020229
(560 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_003615596.1| Zinc finger MYM-type protein [Medicago trunc... 65 8e-22
ref|XP_003589867.1| hypothetical protein MTR_1g040620 [Medicago ... 61 2e-18
gb|AAF82236.1|AC069143_12 Contains similarity to a transposable ... 57 3e-14
ref|NP_173360.1| TTF-type zinc finger protein with HAT dimerizat... 57 3e-14
ref|NP_192704.1| uncharacterized protein [Arabidopsis thaliana] ... 53 6e-13
>ref|XP_003615596.1| Zinc finger MYM-type protein [Medicago truncatula]
gi|355516931|gb|AES98554.1| Zinc finger MYM-type protein
[Medicago truncatula]
Length = 892
Score = 65.5 bits (158), Expect(4) = 8e-22
Identities = 27/56 (48%), Positives = 39/56 (69%)
Frame = +2
Query: 182 ERHRISDYPPNEQKFVRRSYLLKGHFQPREHKFPLTPIYNKLQRFNASWFNDGGDW 349
+R ++S Y PN+Q+ +RR+YL KG QP +H FP I N ++RF SWFN+ G+W
Sbjct: 147 KRPKMSTYHPNDQEIIRRAYLQKGPCQPNQHNFPQRKIGNSMRRFCPSWFNEFGNW 202
Score = 58.5 bits (140), Expect(4) = 8e-22
Identities = 26/49 (53%), Positives = 34/49 (69%)
Frame = +3
Query: 354 LE*NIHDEDVFCLHCYLFRPDHGEQEGGDSSVVKGFRNWKNRKAALQSH 500
LE +I + FCL CYLFRPD G+Q GGD+ + +GF +W N+K L SH
Sbjct: 203 LEYSIEKDAAFCLCCYLFRPDFGKQAGGDTFITEGFTSW-NKKTTLSSH 250
Score = 22.7 bits (47), Expect(4) = 8e-22
Identities = 10/14 (71%), Positives = 12/14 (85%), Gaps = 1/14 (7%)
Frame = +1
Query: 502 HVG-GPNNAHNHAY 540
HVG GPN+AHN A+
Sbjct: 250 HVGAGPNSAHNIAW 263
Score = 21.6 bits (44), Expect(4) = 8e-22
Identities = 9/21 (42%), Positives = 13/21 (61%)
Frame = +1
Query: 130 HVENDHTNLPTDPGLRHRTSS 192
HV + LP+DPG R + S+
Sbjct: 133 HVSCNLEELPSDPGKRPKMST 153
>ref|XP_003589867.1| hypothetical protein MTR_1g040620 [Medicago truncatula]
gi|355478915|gb|AES60118.1| hypothetical protein
MTR_1g040620 [Medicago truncatula]
Length = 665
Score = 61.2 bits (147), Expect(4) = 2e-18
Identities = 26/56 (46%), Positives = 36/56 (64%)
Frame = +2
Query: 182 ERHRISDYPPNEQKFVRRSYLLKGHFQPREHKFPLTPIYNKLQRFNASWFNDGGDW 349
ER ++S Y PN++ +RR+YL KG QP+EH FP P L++FN WF + G W
Sbjct: 50 ERKQLSCYHPNDRDEIRRAYLAKGPCQPKEHNFPQRPFGTFLRKFNPDWFLEFGSW 105
Score = 40.8 bits (94), Expect(4) = 2e-18
Identities = 18/42 (42%), Positives = 26/42 (61%)
Frame = +3
Query: 354 LE*NIHDEDVFCLHCYLFRPDHGEQEGGDSSVVKGFRNWKNR 479
LE ++ + VFCL CYL R + GE +G D+ + F NWK +
Sbjct: 106 LEYSVSKDVVFCLCCYLMRFEIGENKGWDAFFTERFSNWKKK 147
Score = 28.9 bits (63), Expect(4) = 2e-18
Identities = 10/14 (71%), Positives = 13/14 (92%)
Frame = +1
Query: 499 MHVGGPNNAHNHAY 540
+HVGGPN+AHN A+
Sbjct: 152 VHVGGPNSAHNQAW 165
Score = 25.4 bits (54), Expect(4) = 2e-18
Identities = 19/56 (33%), Positives = 27/56 (48%), Gaps = 1/56 (1%)
Frame = +1
Query: 25 MEKFLIKKSILDQSTVAVVVEDTPPN-QVQPMLK*NHVENDHTNLPTDPGLRHRTS 189
ME++ K++ Q V TP + Q P K +E D NLP +PG R + S
Sbjct: 1 MERYY-KRTSESQEVNEVETTPTPTHEQPGPSFKNGFLEVDLENLPANPGERKQLS 55
>gb|AAF82236.1|AC069143_12 Contains similarity to a transposable element Tip100 protein for
transposase from Ipomoea purpurea gb|4063769 and is a
member of the transmembrane 4 family PF|00335
[Arabidopsis thaliana]
Length = 811
Score = 57.4 bits (137), Expect(2) = 3e-14
Identities = 27/56 (48%), Positives = 34/56 (60%)
Frame = +2
Query: 182 ERHRISDYPPNEQKFVRRSYLLKGHFQPREHKFPLTPIYNKLQRFNASWFNDGGDW 349
+R I Y PN++ VRR YL++G QPR HKF I L+RFN WF+ GDW
Sbjct: 68 KRKSILSYHPNQRDEVRREYLIRGPCQPRGHKFKQIAIGKVLRRFNPKWFDLYGDW 123
Score = 45.8 bits (107), Expect(2) = 3e-14
Identities = 22/49 (44%), Positives = 28/49 (57%)
Frame = +3
Query: 354 LE*NIHDEDVFCLHCYLFRPDHGEQEGGDSSVVKGFRNWKNRKAALQSH 500
LE ++ E FCL+CYLFR G Q G DS + GF +W N+ L H
Sbjct: 124 LEYSVEKEKAFCLYCYLFRDQTGNQGGSDSFLSTGFCSW-NKADRLDQH 171
>ref|NP_173360.1| TTF-type zinc finger protein with HAT dimerization domain
[Arabidopsis thaliana] gi|332191703|gb|AEE29824.1|
TTF-type zinc finger protein with HAT dimerization
domain [Arabidopsis thaliana]
Length = 769
Score = 57.4 bits (137), Expect(2) = 3e-14
Identities = 27/56 (48%), Positives = 34/56 (60%)
Frame = +2
Query: 182 ERHRISDYPPNEQKFVRRSYLLKGHFQPREHKFPLTPIYNKLQRFNASWFNDGGDW 349
+R I Y PN++ VRR YL++G QPR HKF I L+RFN WF+ GDW
Sbjct: 26 KRKSILSYHPNQRDEVRREYLIRGPCQPRGHKFKQIAIGKVLRRFNPKWFDLYGDW 81
Score = 45.8 bits (107), Expect(2) = 3e-14
Identities = 22/49 (44%), Positives = 28/49 (57%)
Frame = +3
Query: 354 LE*NIHDEDVFCLHCYLFRPDHGEQEGGDSSVVKGFRNWKNRKAALQSH 500
LE ++ E FCL+CYLFR G Q G DS + GF +W N+ L H
Sbjct: 82 LEYSVEKEKAFCLYCYLFRDQTGNQGGSDSFLSTGFCSW-NKADRLDQH 129
>ref|NP_192704.1| uncharacterized protein [Arabidopsis thaliana]
gi|4538896|emb|CAB39633.1| putative protein [Arabidopsis
thaliana] gi|7267661|emb|CAB78089.1| putative protein
[Arabidopsis thaliana] gi|332657378|gb|AEE82778.1|
uncharacterized protein [Arabidopsis thaliana]
Length = 664
Score = 53.1 bits (126), Expect(2) = 6e-13
Identities = 26/56 (46%), Positives = 33/56 (58%)
Frame = +2
Query: 182 ERHRISDYPPNEQKFVRRSYLLKGHFQPREHKFPLTPIYNKLQRFNASWFNDGGDW 349
+R I Y N++ VRR YL++G QPR HKF I L+RFN WF+ GDW
Sbjct: 26 KRKSILSYHLNQRDEVRREYLIRGPCQPRGHKFKQIVIGKVLRRFNPKWFDLYGDW 81
Score = 45.8 bits (107), Expect(2) = 6e-13
Identities = 22/49 (44%), Positives = 28/49 (57%)
Frame = +3
Query: 354 LE*NIHDEDVFCLHCYLFRPDHGEQEGGDSSVVKGFRNWKNRKAALQSH 500
LE ++ E FCL+CYLFR G Q G DS + GF +W N+ L H
Sbjct: 82 LEYSVEKEKAFCLYCYLFRDQAGNQGGSDSFLSTGFCSW-NKADRLDQH 129