BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00020209
         (352 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AAG51783.1|AC079679_3 reverse transcriptase, putative; 16838-...    80   2e-13
gb|AAD29058.1| putative non-LTR retroelement reverse transcripta...    80   2e-13
gb|ABA98491.1| retrotransposon protein, putative, unclassified [...    79   3e-13
gb|AAM18736.1|AC092548_14 putative reverse transcriptase [Oryza ...    79   3e-13
ref|XP_002468588.1| hypothetical protein SORBIDRAFT_01g048580 [S...    79   3e-13

>gb|AAG51783.1|AC079679_3 reverse transcriptase, putative; 16838-20266 [Arabidopsis thaliana]
          Length = 1142

 Score = 79.7 bits (195), Expect = 2e-13
 Identities = 43/116 (37%), Positives = 59/116 (50%), Gaps = 3/116 (2%)
 Frame = +2

Query: 8   IHYTCWNKICKPKSCGGLGIRLASHHNTALQAKLFWRIVKEPDKPWASSLLKKY-AGGKP 184
           +H+  W+K+C  KS GGLG R     N+AL AK  WR++  PD  +A     +Y     P
Sbjct: 620 MHWMAWDKLCSSKSDGGLGFRNVDDFNSALLAKQLWRLITAPDSLFAKVFKGRYFRKSNP 679

Query: 185 IISVKCPRQEI-WRSIIKARDEILPQLC*HIESGNKIDIWIDPWIPT-LPNKKPFG 346
           + S+K       WRS+I AR  +   L   + SG  I +W DPWIP   P    +G
Sbjct: 680 LDSIKSYSPSYGWRSMISARSLVYKGLIKRVGSGASISVWNDPWIPAQFPRPAKYG 735


>gb|AAD29058.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
            thaliana]
          Length = 1229

 Score = 79.7 bits (195), Expect = 2e-13
 Identities = 43/117 (36%), Positives = 58/117 (49%), Gaps = 2/117 (1%)
 Frame = +2

Query: 5    KIHYTCWNKICKPKSCGGLGIRLASHHNTALQAKLFWRIVKEPDKPWASSLLKKYAGGKP 184
            K  +  W+K+  PK+ GGLG R     N +L AKL WR++  P+   +  LL KY     
Sbjct: 730  KTSWVAWSKLTNPKNAGGLGFRDIERCNDSLLAKLGWRLLNSPESLLSRILLGKYCHSSS 789

Query: 185  IISVKCPRQEI--WRSIIKARDEILPQLC*HIESGNKIDIWIDPWIPTLPNKKPFGP 349
             +  K P Q    WRSII  R+ +   L   I +G K+ IW DPW+       P GP
Sbjct: 790  FMECKLPSQPSHGWRSIIAGREILKEGLGWLITNGEKVSIWNDPWLSISKPLVPIGP 846


>gb|ABA98491.1| retrotransposon protein, putative, unclassified [Oryza sativa
            Japonica Group]
          Length = 1621

 Score = 79.3 bits (194), Expect = 3e-13
 Identities = 45/121 (37%), Positives = 64/121 (52%), Gaps = 5/121 (4%)
 Frame = +2

Query: 2    NKIHYTCWNKICKPKSCGGLGIRLASHHNTALQAKLFWRIVKEPDKPWASSLLKKYAGGK 181
            NK+H+  WNK+  PK+ GGLG R     N A+ AK  WR++++PD   +  L  KY    
Sbjct: 1090 NKMHWLSWNKLTLPKNMGGLGFRDIYIFNLAMLAKQGWRLIQDPDSLCSRVLRAKYF--- 1146

Query: 182  PIISVKCPRQE-----IWRSIIKARDEILPQLC*HIESGNKIDIWIDPWIPTLPNKKPFG 346
            P+     P+Q       WRSI K    +   +   +  G+KI+IW DPWIP   ++KP  
Sbjct: 1147 PLGDCFRPKQTSNVSYTWRSIQKGLRVLQNGMIWRVGDGSKINIWADPWIPRGWSRKPMT 1206

Query: 347  P 349
            P
Sbjct: 1207 P 1207


>gb|AAM18736.1|AC092548_14 putative reverse transcriptase [Oryza sativa Japonica Group]
          Length = 1509

 Score = 79.3 bits (194), Expect = 3e-13
 Identities = 45/121 (37%), Positives = 64/121 (52%), Gaps = 5/121 (4%)
 Frame = +2

Query: 2    NKIHYTCWNKICKPKSCGGLGIRLASHHNTALQAKLFWRIVKEPDKPWASSLLKKYAGGK 181
            NK+H+  WNK+  PK+ GGLG R     N A+ AK  WR++++PD   +  L  KY    
Sbjct: 1035 NKMHWLSWNKLTLPKNMGGLGFRDIYIFNLAMLAKQGWRLIQDPDSLCSRVLRAKYF--- 1091

Query: 182  PIISVKCPRQE-----IWRSIIKARDEILPQLC*HIESGNKIDIWIDPWIPTLPNKKPFG 346
            P+     P+Q       WRSI K    +   +   +  G+KI+IW DPWIP   ++KP  
Sbjct: 1092 PLGDCFRPKQTSNVSYTWRSIQKGLRVLQNGMIWRVGDGSKINIWADPWIPRGWSRKPMT 1151

Query: 347  P 349
            P
Sbjct: 1152 P 1152


>ref|XP_002468588.1| hypothetical protein SORBIDRAFT_01g048580 [Sorghum bicolor]
           gi|241922442|gb|EER95586.1| hypothetical protein
           SORBIDRAFT_01g048580 [Sorghum bicolor]
          Length = 517

 Score = 79.3 bits (194), Expect = 3e-13
 Identities = 44/118 (37%), Positives = 59/118 (50%), Gaps = 2/118 (1%)
 Frame = +2

Query: 2   NKIHYTCWNKICKPKSCGGLGIRLASHHNTALQAKLFWRIVKEPDKPWASSLLKKYAGGK 181
           NKIH+  W K+   K  GGLG R   H N A+ A+  WRI+ EPD      L  +Y    
Sbjct: 258 NKIHWLSWEKLTLSKKRGGLGFRDLYHFNLAMLARQAWRILIEPDTLCGRVLKARYFPNS 317

Query: 182 PIISVKCPRQEI--WRSIIKARDEILPQLC*HIESGNKIDIWIDPWIPTLPNKKPFGP 349
            I+  K     +  WRSII   + +   +   I SG+ ++IW DPWIP    +KP  P
Sbjct: 318 NILQCKARAGILYTWRSIIDGINLLKEGIIWRIGSGSNVNIWTDPWIPRGTTRKPITP 375