BLASTX nr result

ID: Coptis23_contig00020187 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00020187
         (398 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AFG56393.1| Pinus taeda anonymous locus UMN_5889_01 genomic s...    98   8e-19
gb|AFG56391.1| Pinus taeda anonymous locus UMN_5889_01 genomic s...    97   2e-18
gb|ABK24764.1| unknown [Picea sitchensis]                              92   3e-17
gb|ABK24579.1| unknown [Picea sitchensis]                              92   3e-17
ref|XP_004154702.1| PREDICTED: probable polyamine transporter At...    90   2e-16

>gb|AFG56393.1| Pinus taeda anonymous locus UMN_5889_01 genomic sequence
          Length = 133

 Score = 97.8 bits (242), Expect = 8e-19
 Identities = 48/75 (64%), Positives = 58/75 (77%), Gaps = 2/75 (2%)
 Frame = -1

Query: 221 SKNMDTYLDESKLEAN--QPDSKGGTKSKKLTMLPLMFLIYFAVSGGPFGEEPTVKAAGP 48
           S N D   +   +EA   + +S+ G+KSKKL ++PL+FLIYF VSGGPFGEEP VKAAGP
Sbjct: 9   SSNDDEDQEHENIEAGGQRIESRSGSKSKKLKLIPLIFLIYFEVSGGPFGEEPAVKAAGP 68

Query: 47  LLAIIGFLVFPFIWS 3
           LLAI GFLVFPF+WS
Sbjct: 69  LLAIAGFLVFPFVWS 83


>gb|AFG56391.1| Pinus taeda anonymous locus UMN_5889_01 genomic sequence
           gi|383149053|gb|AFG56392.1| Pinus taeda anonymous locus
           UMN_5889_01 genomic sequence gi|383149055|gb|AFG56394.1|
           Pinus taeda anonymous locus UMN_5889_01 genomic sequence
           gi|383149056|gb|AFG56395.1| Pinus taeda anonymous locus
           UMN_5889_01 genomic sequence
          Length = 133

 Score = 96.7 bits (239), Expect = 2e-18
 Identities = 48/75 (64%), Positives = 57/75 (76%), Gaps = 2/75 (2%)
 Frame = -1

Query: 221 SKNMDTYLDESKLEAN--QPDSKGGTKSKKLTMLPLMFLIYFAVSGGPFGEEPTVKAAGP 48
           S N D   +   +EA   + +S  G+KSKKL ++PL+FLIYF VSGGPFGEEP VKAAGP
Sbjct: 9   SSNDDEDQEHENIEAGGQRIESHSGSKSKKLKLIPLIFLIYFEVSGGPFGEEPAVKAAGP 68

Query: 47  LLAIIGFLVFPFIWS 3
           LLAI GFLVFPF+WS
Sbjct: 69  LLAIAGFLVFPFVWS 83


>gb|ABK24764.1| unknown [Picea sitchensis]
          Length = 487

 Score = 92.4 bits (228), Expect = 3e-17
 Identities = 41/55 (74%), Positives = 49/55 (89%)
 Frame = -1

Query: 167 DSKGGTKSKKLTMLPLMFLIYFAVSGGPFGEEPTVKAAGPLLAIIGFLVFPFIWS 3
           +S+ G+KSKKL ++PL+FLIYF VSGGPFGEE  VKAAGPLLAI GFL+FPF+WS
Sbjct: 24  ESRSGSKSKKLKLIPLIFLIYFEVSGGPFGEETAVKAAGPLLAIAGFLIFPFVWS 78


>gb|ABK24579.1| unknown [Picea sitchensis]
          Length = 487

 Score = 92.4 bits (228), Expect = 3e-17
 Identities = 41/55 (74%), Positives = 49/55 (89%)
 Frame = -1

Query: 167 DSKGGTKSKKLTMLPLMFLIYFAVSGGPFGEEPTVKAAGPLLAIIGFLVFPFIWS 3
           +S+ G+KSKKL ++PL+FLIYF VSGGPFGEE  VKAAGPLLAI GFL+FPF+WS
Sbjct: 24  ESRSGSKSKKLKLIPLIFLIYFEVSGGPFGEETAVKAAGPLLAIAGFLIFPFVWS 78


>ref|XP_004154702.1| PREDICTED: probable polyamine transporter At3g13620-like [Cucumis
           sativus]
          Length = 474

 Score = 90.1 bits (222), Expect = 2e-16
 Identities = 45/78 (57%), Positives = 56/78 (71%), Gaps = 2/78 (2%)
 Frame = -1

Query: 230 EQDSKNMDTYLDESK--LEANQPDSKGGTKSKKLTMLPLMFLIYFAVSGGPFGEEPTVKA 57
           +Q + N     D S   L    P +    + KKLT++PL+FLIYF V+GGP+GEEPTV+A
Sbjct: 6   QQSNSNQPATTDSSSQILPTTTPSTPPSVR-KKLTLIPLIFLIYFEVAGGPYGEEPTVQA 64

Query: 56  AGPLLAIIGFLVFPFIWS 3
           AGPLLAIIGF+VFPFIWS
Sbjct: 65  AGPLLAIIGFIVFPFIWS 82


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