BLASTX nr result

ID: Coptis23_contig00020185 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00020185
         (405 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002313136.1| predicted protein [Populus trichocarpa] gi|2...    54   1e-07
ref|XP_002518705.1| cysteine protease, putative [Ricinus communi...    57   1e-07
ref|XP_002298740.1| predicted protein [Populus trichocarpa] gi|2...    55   1e-07
gb|ACB87490.1| mucunain [Mucuna pruriens]                              54   1e-07
ref|XP_002863697.1| hypothetical protein ARALYDRAFT_917391 [Arab...    54   3e-07

>ref|XP_002313136.1| predicted protein [Populus trichocarpa] gi|222849544|gb|EEE87091.1|
           predicted protein [Populus trichocarpa]
          Length = 477

 Score = 54.3 bits (129), Expect(2) = 1e-07
 Identities = 22/36 (61%), Positives = 24/36 (66%), Gaps = 1/36 (2%)
 Frame = -1

Query: 345 CIFFYR-YCIPWG*CGLESVTCCAGHNSCCAHAYPL 241
           CI+ Y  YC  WG C LES TCC  HNSCC H YP+
Sbjct: 395 CIYPYGDYCFGWGCCPLESATCCDDHNSCCPHEYPV 430



 Score = 26.6 bits (57), Expect(2) = 1e-07
 Identities = 11/22 (50%), Positives = 13/22 (59%), Gaps = 1/22 (4%)
 Frame = -3

Query: 403 PPTPLLHTYSYCK-GSTCCCMY 341
           PP+     Y  C  GSTCCC+Y
Sbjct: 376 PPSSECDDYYSCPAGSTCCCIY 397


>ref|XP_002518705.1| cysteine protease, putative [Ricinus communis]
           gi|223542086|gb|EEF43630.1| cysteine protease, putative
           [Ricinus communis]
          Length = 471

 Score = 56.6 bits (135), Expect(2) = 1e-07
 Identities = 27/49 (55%), Positives = 30/49 (61%), Gaps = 4/49 (8%)
 Frame = -1

Query: 345 CIFFYR-YCIPWG*CGLESVTCCAGHNSCCAHAYP---LKARTYQIVYD 211
           CI+ Y  YC  WG C LES TCC  HNSCC H YP   LKA T ++  D
Sbjct: 397 CIYEYSGYCFGWGCCPLESATCCDDHNSCCPHEYPVCDLKAGTCRLSKD 445



 Score = 24.3 bits (51), Expect(2) = 1e-07
 Identities = 9/21 (42%), Positives = 13/21 (61%), Gaps = 1/21 (4%)
 Frame = -3

Query: 400 PTPLLHTYSYCK-GSTCCCMY 341
           P+ +   Y  C  G+TCCC+Y
Sbjct: 379 PSTVCDDYFSCPDGNTCCCIY 399


>ref|XP_002298740.1| predicted protein [Populus trichocarpa] gi|222845998|gb|EEE83545.1|
           predicted protein [Populus trichocarpa]
          Length = 455

 Score = 54.7 bits (130), Expect(2) = 1e-07
 Identities = 22/36 (61%), Positives = 24/36 (66%), Gaps = 1/36 (2%)
 Frame = -1

Query: 345 CIFFYR-YCIPWG*CGLESVTCCAGHNSCCAHAYPL 241
           CI+ Y  YC  WG C LES TCC  HNSCC H YP+
Sbjct: 373 CIYQYGDYCFGWGCCPLESATCCDDHNSCCPHEYPV 408



 Score = 25.8 bits (55), Expect(2) = 1e-07
 Identities = 9/13 (69%), Positives = 10/13 (76%)
 Frame = -3

Query: 379 YSYCKGSTCCCMY 341
           YS   GSTCCC+Y
Sbjct: 363 YSCPAGSTCCCIY 375


>gb|ACB87490.1| mucunain [Mucuna pruriens]
          Length = 422

 Score = 54.3 bits (129), Expect(2) = 1e-07
 Identities = 21/36 (58%), Positives = 25/36 (69%), Gaps = 1/36 (2%)
 Frame = -1

Query: 345 CIF-FYRYCIPWG*CGLESVTCCAGHNSCCAHAYPL 241
           CIF F +YC+ WG C LE+ TCC  H SCC H YP+
Sbjct: 346 CIFEFQKYCMVWGCCPLEAATCCDDHYSCCPHEYPI 381



 Score = 26.2 bits (56), Expect(2) = 1e-07
 Identities = 9/23 (39%), Positives = 14/23 (60%)
 Frame = -3

Query: 403 PPTPLLHTYSYCKGSTCCCMYFF 335
           PP    ++YS    +TCCC++ F
Sbjct: 328 PPNVCDNSYSCSDSATCCCIFEF 350


>ref|XP_002863697.1| hypothetical protein ARALYDRAFT_917391 [Arabidopsis lyrata subsp.
           lyrata] gi|297309532|gb|EFH39956.1| hypothetical protein
           ARALYDRAFT_917391 [Arabidopsis lyrata subsp. lyrata]
          Length = 463

 Score = 53.5 bits (127), Expect(2) = 3e-07
 Identities = 20/36 (55%), Positives = 25/36 (69%), Gaps = 1/36 (2%)
 Frame = -1

Query: 345 CIFFY-RYCIPWG*CGLESVTCCAGHNSCCAHAYPL 241
           C++ Y +YC  WG C LES TCC  H+SCC H YP+
Sbjct: 390 CLYKYGKYCFGWGCCPLESATCCDDHSSCCPHEYPV 425



 Score = 25.8 bits (55), Expect(2) = 3e-07
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = -3

Query: 403 PPTPLLHTYSYCKGSTCCCMY 341
           PPT     +S  + +TCCC+Y
Sbjct: 372 PPTTCDKYFSCPESNTCCCLY 392


Top