BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00020177
         (407 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002532584.1| pentatricopeptide repeat-containing protein,...   178   5e-43
ref|XP_002269136.1| PREDICTED: pentatricopeptide repeat-containi...   176   1e-42
emb|CAN76479.1| hypothetical protein VITISV_028175 [Vitis vinifera]   176   1e-42
ref|XP_002328803.1| predicted protein [Populus trichocarpa] gi|2...   167   1e-39
ref|XP_004172369.1| PREDICTED: LOW QUALITY PROTEIN: pentatricope...   152   3e-35

>ref|XP_002532584.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223527693|gb|EEF29801.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 895

 Score =  178 bits (451), Expect = 5e-43
 Identities = 84/132 (63%), Positives = 106/132 (80%)
 Frame = -2

Query: 397 KFISALCKARRVEDGYCVHGQLKRHDKVRHWYTYLDLIHGFNRANRGDMSSRLLIEMQEN 218
           KFISALCKARR+EDGY +HG+L R ++V    TY +LIHGFN+ NRGD+++RLLIEMQ+ 
Sbjct: 512 KFISALCKARRLEDGYLIHGELNRFNRVAKKSTYSNLIHGFNKFNRGDIAARLLIEMQDK 571

Query: 217 GHRPTRKMYRAVICCICTMVNPENSFFKLLEMQLSCQEPAYQPYNFFIDGAGHAKRPDLA 38
           GH P R ++RAVI  +C M +PE  FF  L+MQLS ++P  Q YNFFIDGAGHAK+PD+A
Sbjct: 572 GHLPARTLFRAVIRSLCEMDDPETRFFNYLDMQLSRRDPNCQIYNFFIDGAGHAKKPDIA 631

Query: 37  REVFEMMARNGI 2
           R+VFEMM R+GI
Sbjct: 632 RKVFEMMQRSGI 643


>ref|XP_002269136.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g71210-like [Vitis vinifera]
          Length = 881

 Score =  176 bits (447), Expect = 1e-42
 Identities = 85/132 (64%), Positives = 103/132 (78%)
 Frame = -2

Query: 397 KFISALCKARRVEDGYCVHGQLKRHDKVRHWYTYLDLIHGFNRANRGDMSSRLLIEMQEN 218
           KFI ALCKARRV+DGY + G+L + +KV    TY ++I GFN  NR D+++RLLIE+QE 
Sbjct: 498 KFILALCKARRVDDGYLIQGELNKINKVASKNTYFNMIRGFNILNRADIAARLLIELQEK 557

Query: 217 GHRPTRKMYRAVICCICTMVNPENSFFKLLEMQLSCQEPAYQPYNFFIDGAGHAKRPDLA 38
           GH PTR ++RAVIC +C M N E  F KLLE+QLS QEP  Q YNFFIDGAGHAK+P+LA
Sbjct: 558 GHTPTRSLFRAVICRLCDMDNAEKQFLKLLELQLSHQEPNCQVYNFFIDGAGHAKKPELA 617

Query: 37  REVFEMMARNGI 2
           REVFEMM R+GI
Sbjct: 618 REVFEMMVRSGI 629


>emb|CAN76479.1| hypothetical protein VITISV_028175 [Vitis vinifera]
          Length = 1173

 Score =  176 bits (447), Expect = 1e-42
 Identities = 85/132 (64%), Positives = 103/132 (78%)
 Frame = -2

Query: 397 KFISALCKARRVEDGYCVHGQLKRHDKVRHWYTYLDLIHGFNRANRGDMSSRLLIEMQEN 218
           KFI ALCKARRV+DGY + G+L + +KV    TY ++I GFN  NR D+++RLLIE+QE 
Sbjct: 498 KFILALCKARRVDDGYLIQGELNKINKVASKNTYFNMIRGFNILNRADIAARLLIELQEK 557

Query: 217 GHRPTRKMYRAVICCICTMVNPENSFFKLLEMQLSCQEPAYQPYNFFIDGAGHAKRPDLA 38
           GH PTR ++RAVIC +C M N E  F KLLE+QLS QEP  Q YNFFIDGAGHAK+P+LA
Sbjct: 558 GHTPTRSLFRAVICRLCDMDNAEKQFLKLLELQLSHQEPNCQVYNFFIDGAGHAKKPELA 617

Query: 37  REVFEMMARNGI 2
           REVFEMM R+GI
Sbjct: 618 REVFEMMVRSGI 629


>ref|XP_002328803.1| predicted protein [Populus trichocarpa] gi|222839101|gb|EEE77452.1|
           predicted protein [Populus trichocarpa]
          Length = 881

 Score =  167 bits (422), Expect = 1e-39
 Identities = 81/132 (61%), Positives = 101/132 (76%)
 Frame = -2

Query: 397 KFISALCKARRVEDGYCVHGQLKRHDKVRHWYTYLDLIHGFNRANRGDMSSRLLIEMQEN 218
           + ISALC+A R EDGY +HG+  R ++V    TY  LIHGF+++NRG ++SRLLIEMQ+ 
Sbjct: 508 RVISALCRAGRFEDGYVMHGEFNRRNRVATVATYRQLIHGFSKSNRGHVASRLLIEMQDK 567

Query: 217 GHRPTRKMYRAVICCICTMVNPENSFFKLLEMQLSCQEPAYQPYNFFIDGAGHAKRPDLA 38
           GH+PTRKM+RAV  C+C M NPE  FFKLLEMQL   +   + YNFFID AG +K+P+LA
Sbjct: 568 GHQPTRKMFRAVFRCLCDMENPEMHFFKLLEMQLYRHKFNTKVYNFFIDEAGRSKKPELA 627

Query: 37  REVFEMMARNGI 2
           REVFEMM RNGI
Sbjct: 628 REVFEMMQRNGI 639


>ref|XP_004172369.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At1g71210-like, partial [Cucumis sativus]
          Length = 889

 Score =  152 bits (384), Expect = 3e-35
 Identities = 76/132 (57%), Positives = 94/132 (71%)
 Frame = -2

Query: 397 KFISALCKARRVEDGYCVHGQLKRHDKVRHWYTYLDLIHGFNRANRGDMSSRLLIEMQEN 218
           KFI ALC+ARRVEDGY +H +L R + V    TY  LI GF ++ RGD+++RLLIEM E 
Sbjct: 498 KFIYALCRARRVEDGYLIHCELNRINVVATRSTYFVLIEGFIKSGRGDIAARLLIEMLEK 557

Query: 217 GHRPTRKMYRAVICCICTMVNPENSFFKLLEMQLSCQEPAYQPYNFFIDGAGHAKRPDLA 38
           GH P R ++R+VI C+  M N E  FF LLE+QLSCQEP  + YN FI  AG AK+P+LA
Sbjct: 558 GHNPPRGLFRSVILCLIEMENMEKQFFNLLELQLSCQEPNSEVYNNFIYAAGRAKKPELA 617

Query: 37  REVFEMMARNGI 2
            EV+ MM RNGI
Sbjct: 618 NEVYHMMLRNGI 629