BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00020172
         (653 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|NP_566322.1| F-box protein [Arabidopsis thaliana] gi|7526578...    74   2e-13
ref|XP_002534512.1| conserved hypothetical protein [Ricinus comm...    64   5e-13
ref|XP_002317261.1| predicted protein [Populus trichocarpa] gi|2...    72   9e-13
ref|XP_002301588.1| f-box family protein [Populus trichocarpa] g...    70   9e-13
ref|XP_002882554.1| F-box family protein [Arabidopsis lyrata sub...    73   1e-12

>ref|NP_566322.1| F-box protein [Arabidopsis thaliana]
           gi|75265789|sp|Q9SFC7.1|FB135_ARATH RecName: Full=F-box
           protein At3g07870 gi|6648199|gb|AAF21197.1|AC013483_21
           unknown protein [Arabidopsis thaliana]
           gi|15983479|gb|AAL11607.1|AF424614_1 AT3g07870/F17A17_21
           [Arabidopsis thaliana] gi|109134141|gb|ABG25068.1|
           At3g07870 [Arabidopsis thaliana]
           gi|332641092|gb|AEE74613.1| F-box protein [Arabidopsis
           thaliana]
          Length = 417

 Score = 74.3 bits (181), Expect(2) = 2e-13
 Identities = 44/115 (38%), Positives = 62/115 (53%)
 Frame = -3

Query: 390 SDILVNGALHWIGSFSNSTTAEEVILFKLDIEEFQKLPLPPGLGSAVNTNRFLVELGECL 211
           S+ LVNG LH++          + + F L+ EEF+++P  P  G    TN  LV L  CL
Sbjct: 239 SEALVNGRLHFVTRPRRHVPDRKFVSFDLEDEEFKEIP-KPDCGGLNRTNHRLVNLKGCL 297

Query: 210 CVVHVINAEYIRIWVMKNYGVESSWTKEYVIRITQMDRDYRLDPIQPVQLMKNGE 46
           C V   N   + IWVMK YGV+ SW KEY I  T + +  + +  +P+ + KN E
Sbjct: 298 CAVVYGNYGKLDIWVMKTYGVKESWGKEYSIG-TYLPKGLKQNLDRPMWIWKNAE 351



 Score = 26.6 bits (57), Expect(2) = 2e-13
 Identities = 19/72 (26%), Positives = 37/72 (51%), Gaps = 14/72 (19%)
 Frame = -1

Query: 575 VSEVFKVIRILINLVDNLRNDSIQ--------EETAAEVYTLG---TDE---WRSLGKVP 438
           +++ +KV++I+     +  N+ I         +++  ++ TL    TD+   WRSLGK P
Sbjct: 172 MTKEYKVLKIVYFRGSSSNNNGIYRGRGRIQYKQSEVQILTLSSKTTDQSLSWRSLGKAP 231

Query: 437 FYFPRYSNNNYV 402
           + F + S+   V
Sbjct: 232 YKFVKRSSEALV 243


>ref|XP_002534512.1| conserved hypothetical protein [Ricinus communis]
           gi|223525141|gb|EEF27869.1| conserved hypothetical
           protein [Ricinus communis]
          Length = 383

 Score = 64.3 bits (155), Expect(2) = 5e-13
 Identities = 40/131 (30%), Positives = 66/131 (50%), Gaps = 13/131 (9%)
 Frame = -3

Query: 390 SDILVNGALHWIGSFSNSTTAEEVILFKLDIEEFQKLPLPPGLGSAVNTNRFLVELGECL 211
           S + VNG LHW+          ++I F L+ E+F+++PLP   G     +  LV + +CL
Sbjct: 214 SQVYVNGRLHWVNWPVRYRPGRKLISFDLEDEKFREVPLPGSDGIKWG-DYMLVVIRDCL 272

Query: 210 CVVHVINAEYIRIWVMKNYGVESSWTKEYVIRI-------------TQMDRDYRLDPIQP 70
                 N     +WVMK+YG++ SW KE+ I +              ++ + YR    + 
Sbjct: 273 SAAVYRNYGSFEVWVMKDYGLKESWIKEFSIGVYLPKGLEQKIDPSFRVSKFYRRAFTRI 332

Query: 69  VQLMKNGEMLL 37
           + ++KNGE+LL
Sbjct: 333 LCVLKNGEILL 343



 Score = 35.4 bits (80), Expect(2) = 5e-13
 Identities = 16/53 (30%), Positives = 31/53 (58%), Gaps = 3/53 (5%)
 Frame = -1

Query: 581 DPVSEVFKVIRI-LINLVDNLRND--SIQEETAAEVYTLGTDEWRSLGKVPFY 432
           DPV + +KV+++  I   +N   +   +   +  ++ T+G+  WRSLG+ P+Y
Sbjct: 156 DPVRKKYKVLKVSYIRRTNNTAGERYGLSLRSEVQILTVGSPSWRSLGETPYY 208


>ref|XP_002317261.1| predicted protein [Populus trichocarpa] gi|222860326|gb|EEE97873.1|
           predicted protein [Populus trichocarpa]
          Length = 410

 Score = 72.0 bits (175), Expect(2) = 9e-13
 Identities = 41/117 (35%), Positives = 66/117 (56%), Gaps = 1/117 (0%)
 Frame = -3

Query: 384 ILVNGALHWIGSFSNSTTAEEVILFKLDIEEFQKLPLPPGLGSAVNTNRF-LVELGECLC 208
           + +NGALHWI +  +   A+  ++  LDI+  +  P+ P  G   +T    L  L +CL 
Sbjct: 237 VSLNGALHWILNLDDYEDAD--LICALDIDSKKIRPMSPPNGFRRDTTEMTLGVLRDCLF 294

Query: 207 VVHVINAEYIRIWVMKNYGVESSWTKEYVIRITQMDRDYRLDPIQPVQLMKNGEMLL 37
           +   +    + IWVMK YGV+ SWTKE VI  T +  + +   +QP+ + K+GE+L+
Sbjct: 295 ICDSMTLYNLDIWVMKEYGVKDSWTKEIVIAKTSLPSNLQNSFLQPIMVSKDGEVLI 351



 Score = 26.9 bits (58), Expect(2) = 9e-13
 Identities = 8/18 (44%), Positives = 14/18 (77%)
 Frame = -1

Query: 488 EVYTLGTDEWRSLGKVPF 435
           E+   G +EW+S+G++PF
Sbjct: 211 EICIFGDNEWKSIGEIPF 228


>ref|XP_002301588.1| f-box family protein [Populus trichocarpa]
           gi|222843314|gb|EEE80861.1| f-box family protein
           [Populus trichocarpa]
          Length = 408

 Score = 69.7 bits (169), Expect(2) = 9e-13
 Identities = 39/113 (34%), Positives = 59/113 (52%)
 Frame = -3

Query: 390 SDILVNGALHWIGSFSNSTTAEEVILFKLDIEEFQKLPLPPGLGSAVNTNRFLVELGECL 211
           S+ LVNG LHW+     +  A  ++ F L  E+F+++P  P  G     +  L  L  CL
Sbjct: 232 SETLVNGRLHWVSRPCRNKPARRLVSFDLTDEQFREVP-KPDCGGLNRCDYHLAVLRGCL 290

Query: 210 CVVHVINAEYIRIWVMKNYGVESSWTKEYVIRITQMDRDYRLDPIQPVQLMKN 52
            V    N   + IWVMK Y V+ SW KEY I    M +  + + ++P+++ KN
Sbjct: 291 SVAVYCNYGRLEIWVMKEYNVKESWVKEYNIG-AYMPKGLKQNLVRPLKIWKN 342



 Score = 29.3 bits (64), Expect(2) = 9e-13
 Identities = 20/64 (31%), Positives = 31/64 (48%), Gaps = 4/64 (6%)
 Frame = -1

Query: 581 DPVSEVFKVIRILINLVDNLRNDS----IQEETAAEVYTLGTDEWRSLGKVPFYFPRYSN 414
           +P +  +KVIRI+     + R       I   +  ++ TLG   WRSLGKV +   R ++
Sbjct: 173 NPKTNEYKVIRIVYYRNGHGRYPRSRRIIYPLSQVQILTLGCPGWRSLGKVSYRLVRRAS 232

Query: 413 NNYV 402
              V
Sbjct: 233 ETLV 236


>ref|XP_002882554.1| F-box family protein [Arabidopsis lyrata subsp. lyrata]
           gi|297328394|gb|EFH58813.1| F-box family protein
           [Arabidopsis lyrata subsp. lyrata]
          Length = 415

 Score = 72.8 bits (177), Expect(2) = 1e-12
 Identities = 43/115 (37%), Positives = 62/115 (53%)
 Frame = -3

Query: 390 SDILVNGALHWIGSFSNSTTAEEVILFKLDIEEFQKLPLPPGLGSAVNTNRFLVELGECL 211
           S+ LVNG LH++          + + F L+ EEF+++P  P  G    TN  LV L  CL
Sbjct: 237 SEALVNGRLHFVTRPRRHVPDRKFVSFDLEDEEFKEIP-KPDCGGLNRTNHRLVNLKGCL 295

Query: 210 CVVHVINAEYIRIWVMKNYGVESSWTKEYVIRITQMDRDYRLDPIQPVQLMKNGE 46
           C V   N   + IWVM+ YGV+ SW KEY I  T + +  + +  +P+ + KN E
Sbjct: 296 CAVVYGNYGKLDIWVMETYGVKESWGKEYSIG-TYLPKGLKQNLDRPMWIWKNAE 349



 Score = 25.8 bits (55), Expect(2) = 1e-12
 Identities = 19/68 (27%), Positives = 34/68 (50%), Gaps = 14/68 (20%)
 Frame = -1

Query: 563 FKVIRILINLVDNLRNDSIQ--------EETAAEVYTLG---TDE---WRSLGKVPFYFP 426
           +KV++I+     +  N+ I         +++  ++ TL    TD+   WRSLGK P+ F 
Sbjct: 174 YKVLKIVYFRGSSSSNNGIYRGRGRIQYKQSEVQILTLSSKTTDQSLSWRSLGKAPYKFM 233

Query: 425 RYSNNNYV 402
           + S+   V
Sbjct: 234 KRSSEALV 241