BLASTX nr result
ID: Coptis23_contig00020149
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Coptis23_contig00020149
(1253 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_004158942.1| PREDICTED: WD repeat-containing protein 5-li... 489 e-136
ref|XP_004147003.1| PREDICTED: WD repeat-containing protein 5-li... 489 e-136
emb|CAN61446.1| hypothetical protein VITISV_024139 [Vitis vinifera] 480 e-133
ref|XP_003590636.1| WD repeat-containing protein [Medicago trunc... 479 e-133
ref|XP_002278415.1| PREDICTED: WD repeat-containing protein 5 [V... 479 e-133
>ref|XP_004158942.1| PREDICTED: WD repeat-containing protein 5-like [Cucumis sativus]
Length = 335
Score = 489 bits (1260), Expect = e-136
Identities = 232/294 (78%), Positives = 264/294 (89%), Gaps = 2/294 (0%)
Frame = +2
Query: 2 SHKQAVSCVKFSNDGSLLASSSLDKTLIVYSSQTLTSLSHLIGHSAGVSDFSWSLDSHYI 181
+H +AVSCVKFSNDG+LLAS+SLDKTLI++SS +LT L+GHS G+SD +WS DSHYI
Sbjct: 42 AHTRAVSCVKFSNDGTLLASASLDKTLIIWSSSSLTLRHRLVGHSEGISDLAWSSDSHYI 101
Query: 182 CSASDDKTLRIWDARS--GESVKTLRGHSGFVFCVNFNPQSNLIVSGSFDETVRVWDVKT 355
CSASDD+TLRIWDARS GE VKTLRGHS FVFCVNFNPQSNLIVSGSFDET+R+W+VKT
Sbjct: 102 CSASDDRTLRIWDARSPTGECVKTLRGHSDFVFCVNFNPQSNLIVSGSFDETIRIWEVKT 161
Query: 356 GKVIHVIRAHAMPVTSVHFIRDGSIIVSGSHDGKCKIWDAATGACLKTLIDEKDGPAVSF 535
GK +HVIRAH+MPVTSVHF RDGS+IVSGSHDG CKIWDA++G CLKTLID+K PAVSF
Sbjct: 162 GKCLHVIRAHSMPVTSVHFNRDGSLIVSGSHDGSCKIWDASSGTCLKTLIDDKV-PAVSF 220
Query: 536 AKFSPNGKFVLVATLDDNLRLWNYSTGRYIKNYLGHVNKVYCITSTFSVTNGKYIVSGSE 715
AKFSPNGKF+LVATL+D L+LWNYS G+++K Y GHVN+V+C+ STFSVTNGKYIVSGSE
Sbjct: 221 AKFSPNGKFILVATLNDTLKLWNYSAGKFLKIYTGHVNRVHCVVSTFSVTNGKYIVSGSE 280
Query: 716 DHCVYIWDLQGKNMVQKLVGHTDTVISVSCHPTENKIASAGLDNDRTVRIWVQD 877
D CVYIWDLQ K M+QKL GHTD VISVSCHPTENKIASAGLD DR+VR+WVQD
Sbjct: 281 DKCVYIWDLQQKTMIQKLEGHTDVVISVSCHPTENKIASAGLDGDRSVRVWVQD 334
>ref|XP_004147003.1| PREDICTED: WD repeat-containing protein 5-like [Cucumis sativus]
Length = 358
Score = 489 bits (1260), Expect = e-136
Identities = 232/294 (78%), Positives = 264/294 (89%), Gaps = 2/294 (0%)
Frame = +2
Query: 2 SHKQAVSCVKFSNDGSLLASSSLDKTLIVYSSQTLTSLSHLIGHSAGVSDFSWSLDSHYI 181
+H +AVSCVKFSNDG+LLAS+SLDKTLI++SS +LT L+GHS G+SD +WS DSHYI
Sbjct: 65 AHTRAVSCVKFSNDGTLLASASLDKTLIIWSSSSLTLRHRLVGHSEGISDLAWSSDSHYI 124
Query: 182 CSASDDKTLRIWDARS--GESVKTLRGHSGFVFCVNFNPQSNLIVSGSFDETVRVWDVKT 355
CSASDD+TLRIWDARS GE VKTLRGHS FVFCVNFNPQSNLIVSGSFDET+R+W+VKT
Sbjct: 125 CSASDDRTLRIWDARSPTGECVKTLRGHSDFVFCVNFNPQSNLIVSGSFDETIRIWEVKT 184
Query: 356 GKVIHVIRAHAMPVTSVHFIRDGSIIVSGSHDGKCKIWDAATGACLKTLIDEKDGPAVSF 535
GK +HVIRAH+MPVTSVHF RDGS+IVSGSHDG CKIWDA++G CLKTLID+K PAVSF
Sbjct: 185 GKCLHVIRAHSMPVTSVHFNRDGSLIVSGSHDGSCKIWDASSGTCLKTLIDDKV-PAVSF 243
Query: 536 AKFSPNGKFVLVATLDDNLRLWNYSTGRYIKNYLGHVNKVYCITSTFSVTNGKYIVSGSE 715
AKFSPNGKF+LVATL+D L+LWNYS G+++K Y GHVN+V+C+ STFSVTNGKYIVSGSE
Sbjct: 244 AKFSPNGKFILVATLNDTLKLWNYSAGKFLKIYTGHVNRVHCVVSTFSVTNGKYIVSGSE 303
Query: 716 DHCVYIWDLQGKNMVQKLVGHTDTVISVSCHPTENKIASAGLDNDRTVRIWVQD 877
D CVYIWDLQ K M+QKL GHTD VISVSCHPTENKIASAGLD DR+VR+WVQD
Sbjct: 304 DKCVYIWDLQQKTMIQKLEGHTDVVISVSCHPTENKIASAGLDGDRSVRVWVQD 357
>emb|CAN61446.1| hypothetical protein VITISV_024139 [Vitis vinifera]
Length = 315
Score = 480 bits (1236), Expect = e-133
Identities = 231/292 (79%), Positives = 258/292 (88%)
Frame = +2
Query: 2 SHKQAVSCVKFSNDGSLLASSSLDKTLIVYSSQTLTSLSHLIGHSAGVSDFSWSLDSHYI 181
+H +AVSCVKFS+DG+LLAS+SLDKTLIV+SSQTLT S L+GHS G+SD +WS DSHYI
Sbjct: 24 AHDRAVSCVKFSSDGTLLASASLDKTLIVWSSQTLTLKSRLVGHSGGISDLAWSSDSHYI 83
Query: 182 CSASDDKTLRIWDARSGESVKTLRGHSGFVFCVNFNPQSNLIVSGSFDETVRVWDVKTGK 361
CSASDD TLRIWDA+S E VKTLRGH+ VFCVNFNPQSNLIVSGSFDETVR+WDVKTG+
Sbjct: 84 CSASDDLTLRIWDAQSAECVKTLRGHTDLVFCVNFNPQSNLIVSGSFDETVRIWDVKTGR 143
Query: 362 VIHVIRAHAMPVTSVHFIRDGSIIVSGSHDGKCKIWDAATGACLKTLIDEKDGPAVSFAK 541
+H I AH+MPVTSV+F RDGS+IVSGSHDG CKIW + TGA LKTLI E +GPA+SFAK
Sbjct: 144 PLHTIAAHSMPVTSVYFNRDGSLIVSGSHDGSCKIWASDTGALLKTLI-EDNGPAISFAK 202
Query: 542 FSPNGKFVLVATLDDNLRLWNYSTGRYIKNYLGHVNKVYCITSTFSVTNGKYIVSGSEDH 721
FSPNGK++LVATLDD L+LWNYSTG+ +K Y GHVNKVYCI S FSVT GKYIVSGSED
Sbjct: 203 FSPNGKYILVATLDDTLKLWNYSTGKSLKIYTGHVNKVYCIASAFSVTYGKYIVSGSEDK 262
Query: 722 CVYIWDLQGKNMVQKLVGHTDTVISVSCHPTENKIASAGLDNDRTVRIWVQD 877
CVY+WDLQGKN +QKL GHTDTVISVSCHP ENKIASAGLD DRTVRIWVQD
Sbjct: 263 CVYVWDLQGKNPLQKLEGHTDTVISVSCHPNENKIASAGLDXDRTVRIWVQD 314
Score = 75.9 bits (185), Expect = 2e-11
Identities = 47/174 (27%), Positives = 81/174 (46%)
Frame = +2
Query: 359 KVIHVIRAHAMPVTSVHFIRDGSIIVSGSHDGKCKIWDAATGACLKTLIDEKDGPAVSFA 538
+++ + AH V+ V F DG+++ S S D +W + T L+ G +S
Sbjct: 17 RLLRTLAAHDRAVSCVKFSSDGTLLASASLDKTLIVWSSQTLTLKSRLVGHSGG--ISDL 74
Query: 539 KFSPNGKFVLVATLDDNLRLWNYSTGRYIKNYLGHVNKVYCITSTFSVTNGKYIVSGSED 718
+S + ++ A+ D LR+W+ + +K GH + V+C+ IVSGS D
Sbjct: 75 AWSSDSHYICSASDDLTLRIWDAQSAECVKTLRGHTDLVFCVNFN---PQSNLIVSGSFD 131
Query: 719 HCVYIWDLQGKNMVQKLVGHTDTVISVSCHPTENKIASAGLDNDRTVRIWVQDT 880
V IWD++ + + H+ V SV + + I S +D + +IW DT
Sbjct: 132 ETVRIWDVKTGRPLHTIAAHSMPVTSVYFNRDGSLIVSG--SHDGSCKIWASDT 183
>ref|XP_003590636.1| WD repeat-containing protein [Medicago truncatula]
gi|355479684|gb|AES60887.1| WD repeat-containing protein
[Medicago truncatula] gi|388501300|gb|AFK38716.1|
unknown [Medicago truncatula]
Length = 316
Score = 479 bits (1234), Expect = e-133
Identities = 229/293 (78%), Positives = 259/293 (88%)
Frame = +2
Query: 2 SHKQAVSCVKFSNDGSLLASSSLDKTLIVYSSQTLTSLSHLIGHSAGVSDFSWSLDSHYI 181
+H +AVSCVKFSNDG+LLAS+SLDKTLI+YSS TL+ L L GHS G++D +WS DSHYI
Sbjct: 25 THTRAVSCVKFSNDGNLLASASLDKTLIIYSSTTLSLLHRLTGHSEGINDIAWSSDSHYI 84
Query: 182 CSASDDKTLRIWDARSGESVKTLRGHSGFVFCVNFNPQSNLIVSGSFDETVRVWDVKTGK 361
CSASDDKTLRIWDA +G+ VKTLRGH VFCVNFNPQSN IVSGSFDETVRVW+VKTGK
Sbjct: 85 CSASDDKTLRIWDANTGDCVKTLRGHGHNVFCVNFNPQSNYIVSGSFDETVRVWEVKTGK 144
Query: 362 VIHVIRAHAMPVTSVHFIRDGSIIVSGSHDGKCKIWDAATGACLKTLIDEKDGPAVSFAK 541
+HVI+AHAMPVTSV F RDGS+IVSGSHDG CKIWD +GA LKTLID+K PAVSFAK
Sbjct: 145 SVHVIKAHAMPVTSVDFNRDGSLIVSGSHDGSCKIWDTNSGALLKTLIDDK-VPAVSFAK 203
Query: 542 FSPNGKFVLVATLDDNLRLWNYSTGRYIKNYLGHVNKVYCITSTFSVTNGKYIVSGSEDH 721
FSPNGKF+LVATL+D L+LWNY+ GR +K Y GHVN+VYC+TSTFSVTNG+YIVSGSED
Sbjct: 204 FSPNGKFILVATLNDTLKLWNYAAGRSLKMYSGHVNRVYCLTSTFSVTNGRYIVSGSEDR 263
Query: 722 CVYIWDLQGKNMVQKLVGHTDTVISVSCHPTENKIASAGLDNDRTVRIWVQDT 880
C+Y+WDLQ KNM+QKL GHTDTVISV+CHP ENKIASAGLD DRTVRIWVQD+
Sbjct: 264 CLYLWDLQQKNMIQKLEGHTDTVISVTCHPKENKIASAGLDGDRTVRIWVQDS 316
Score = 104 bits (260), Expect = 4e-20
Identities = 63/211 (29%), Positives = 101/211 (47%), Gaps = 2/211 (0%)
Frame = +2
Query: 242 KTLRGHSGFVFCVNFNPQSNLIVSGSFDETVRVWDVKTGKVIHVIRAHAMPVTSVHFIRD 421
KTL H+ V CV F+ NL+ S S D+T+ ++ T ++H + H+ + + + D
Sbjct: 21 KTLTTHTRAVSCVKFSNDGNLLASASLDKTLIIYSSTTLSLLHRLTGHSEGINDIAWSSD 80
Query: 422 GSIIVSGSHDGKCKIWDAATGACLKTLIDEKDGPAVSFAKFSPNGKFVLVATLDDNLRLW 601
I S S D +IWDA TG C+KTL G V F+P +++ + D+ +R+W
Sbjct: 81 SHYICSASDDKTLRIWDANTGDCVKTL--RGHGHNVFCVNFNPQSNYIVSGSFDETVRVW 138
Query: 602 NYSTGRYIKNYLGHVNKVYC--ITSTFSVTNGKYIVSGSEDHCVYIWDLQGKNMVQKLVG 775
TG+ + HV K + +TS +G IVSGS D IWD +++ L+
Sbjct: 139 EVKTGKSV-----HVIKAHAMPVTSVDFNRDGSLIVSGSHDGSCKIWDTNSGALLKTLID 193
Query: 776 HTDTVISVSCHPTENKIASAGLDNDRTVRIW 868
+S + K ND T+++W
Sbjct: 194 DKVPAVSFAKFSPNGKFILVATLND-TLKLW 223
>ref|XP_002278415.1| PREDICTED: WD repeat-containing protein 5 [Vitis vinifera]
Length = 315
Score = 479 bits (1234), Expect = e-133
Identities = 230/292 (78%), Positives = 258/292 (88%)
Frame = +2
Query: 2 SHKQAVSCVKFSNDGSLLASSSLDKTLIVYSSQTLTSLSHLIGHSAGVSDFSWSLDSHYI 181
+H +AVSCVKFS+DG+LLAS+SLDKTLIV+SSQTLT S L+GHS G+SD +WS DSHYI
Sbjct: 24 AHDRAVSCVKFSSDGTLLASASLDKTLIVWSSQTLTLKSRLVGHSGGISDLAWSSDSHYI 83
Query: 182 CSASDDKTLRIWDARSGESVKTLRGHSGFVFCVNFNPQSNLIVSGSFDETVRVWDVKTGK 361
CSASDD TLRIWDA+S E VKTLRGH+ VFCVNFNPQSNLIVSGSFDETVR+WDVKTG+
Sbjct: 84 CSASDDLTLRIWDAQSAECVKTLRGHTDLVFCVNFNPQSNLIVSGSFDETVRIWDVKTGR 143
Query: 362 VIHVIRAHAMPVTSVHFIRDGSIIVSGSHDGKCKIWDAATGACLKTLIDEKDGPAVSFAK 541
+H I AH+MPVTSV+F RDGS+IVSGSHDG CKIW + TGA LKTLI E +GPA+SFAK
Sbjct: 144 PLHTIAAHSMPVTSVYFNRDGSLIVSGSHDGSCKIWASDTGALLKTLI-EDNGPAISFAK 202
Query: 542 FSPNGKFVLVATLDDNLRLWNYSTGRYIKNYLGHVNKVYCITSTFSVTNGKYIVSGSEDH 721
FSPNGK++LVATLDD L+LWNYSTG+ +K Y GHVNKVYCI S FSVT GKYIVSGSED
Sbjct: 203 FSPNGKYILVATLDDTLKLWNYSTGKSLKIYTGHVNKVYCIASAFSVTYGKYIVSGSEDK 262
Query: 722 CVYIWDLQGKNMVQKLVGHTDTVISVSCHPTENKIASAGLDNDRTVRIWVQD 877
CVY+WDLQGKN +QKL GHTDTVISVSCHP ENKIASAGLD D+TVRIWVQD
Sbjct: 263 CVYVWDLQGKNPLQKLEGHTDTVISVSCHPNENKIASAGLDGDKTVRIWVQD 314
Score = 75.9 bits (185), Expect = 2e-11
Identities = 47/174 (27%), Positives = 81/174 (46%)
Frame = +2
Query: 359 KVIHVIRAHAMPVTSVHFIRDGSIIVSGSHDGKCKIWDAATGACLKTLIDEKDGPAVSFA 538
+++ + AH V+ V F DG+++ S S D +W + T L+ G +S
Sbjct: 17 RLLRTLAAHDRAVSCVKFSSDGTLLASASLDKTLIVWSSQTLTLKSRLVGHSGG--ISDL 74
Query: 539 KFSPNGKFVLVATLDDNLRLWNYSTGRYIKNYLGHVNKVYCITSTFSVTNGKYIVSGSED 718
+S + ++ A+ D LR+W+ + +K GH + V+C+ IVSGS D
Sbjct: 75 AWSSDSHYICSASDDLTLRIWDAQSAECVKTLRGHTDLVFCVNFN---PQSNLIVSGSFD 131
Query: 719 HCVYIWDLQGKNMVQKLVGHTDTVISVSCHPTENKIASAGLDNDRTVRIWVQDT 880
V IWD++ + + H+ V SV + + I S +D + +IW DT
Sbjct: 132 ETVRIWDVKTGRPLHTIAAHSMPVTSVYFNRDGSLIVSG--SHDGSCKIWASDT 183