BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00020126
         (629 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AAF79618.1|AC027665_19 F5M15.26 [Arabidopsis thaliana]             214   5e-55
gb|AAD22283.1| putative retroelement pol polyprotein [Arabidopsi...   214   5e-55
gb|ABW81060.1| GagPol3 [Arabidopsis lyrata subsp. lyrata]             207   1e-52
emb|CAN68524.1| hypothetical protein VITISV_025157 [Vitis vinifera]   210   1e-52
emb|CAN69925.1| hypothetical protein VITISV_027208 [Vitis vinifera]   210   1e-52

>gb|AAF79618.1|AC027665_19 F5M15.26 [Arabidopsis thaliana]
          Length = 1838

 Score =  214 bits (546), Expect(2) = 5e-55
 Identities = 101/195 (51%), Positives = 138/195 (70%)
 Frame = -3

Query: 618  HHLHMREDAKPVRQKMRSIRPKYAEGIREEIARLKGAGIIREVEFTDWLSNIVAVPKKNG 439
            H L++    KPV+QK R + P+ A  + EE+ +L  AG I EV++ +WL+N V V KKNG
Sbjct: 814  HELNVDPTFKPVKQKRRKLGPERARAVNEEVEKLLKAGQIIEVKYPEWLANPVVVKKKNG 873

Query: 438  KVRMCVDFTDVNMECPKDSYPMPREDELLDRTAGFKIFSFMDASMGYNQVAMYGPDQEKT 259
            K R+CVD+TD+N  CPKDSYP+P  D L++ T+G  + SFMDA  GYNQ+ M+  DQEKT
Sbjct: 874  KWRVCVDYTDLNKACPKDSYPLPHIDRLVEATSGNGLLSFMDAFSGYNQILMHKDDQEKT 933

Query: 258  SFVVEGGTYCYTRMLFGLKNARATFQRLGERMFASKIRRGIEIYIDDMVEKSMSEEEHIE 79
            SFV + GTYCY  M FGLKNA AT+QR   +M A +I R +E+YIDDM+ KS+  E+H+E
Sbjct: 934  SFVTDRGTYCYKVMSFGLKNAGATYQRFVNKMLADQIGRTVEVYIDDMLVKSLKPEDHVE 993

Query: 78   GLRETFEILHKYNLK 34
             L + F++L+ Y +K
Sbjct: 994  HLSKCFDVLNTYGMK 1008



 Score = 25.8 bits (55), Expect(2) = 5e-55
 Identities = 9/12 (75%), Positives = 11/12 (91%)
 Frame = -2

Query: 37   EMNPEKCTFGVT 2
            ++NP KCTFGVT
Sbjct: 1008 KLNPTKCTFGVT 1019


>gb|AAD22283.1| putative retroelement pol polyprotein [Arabidopsis thaliana]
          Length = 1787

 Score =  214 bits (545), Expect(2) = 5e-55
 Identities = 99/196 (50%), Positives = 137/196 (69%)
 Frame = -3

Query: 621  CHHLHMREDAKPVRQKMRSIRPKYAEGIREEIARLKGAGIIREVEFTDWLSNIVAVPKKN 442
            CH L++    KP++QK R + P   + + EE+ +L  AG I EV + DWL N V V KKN
Sbjct: 771  CHELNVDPTYKPLKQKRRKLGPDRTKDVNEEVKKLLDAGSIVEVRYPDWLRNPVVVKKKN 830

Query: 441  GKVRMCVDFTDVNMECPKDSYPMPREDELLDRTAGFKIFSFMDASMGYNQVAMYGPDQEK 262
            GK R+C+DFTD+N  CPKDS+P+P  D L++ TAG ++ SFMDA  GYNQ+ M+  D+EK
Sbjct: 831  GKWRVCIDFTDLNKACPKDSFPLPHIDRLVEATAGNELLSFMDAFSGYNQILMHQNDREK 890

Query: 261  TSFVVEGGTYCYTRMLFGLKNARATFQRLGERMFASKIRRGIEIYIDDMVEKSMSEEEHI 82
            T F+ + GTYCY  M FGLKNA AT+ RL  +MF  ++   +E+YIDDM+ KS+  EEHI
Sbjct: 891  TVFITDQGTYCYKVMPFGLKNAGATYPRLVNQMFTDQLDHSMEVYIDDMLVKSLRAEEHI 950

Query: 81   EGLRETFEILHKYNLK 34
              LR+ F++L++YN+K
Sbjct: 951  THLRQCFQVLNRYNMK 966



 Score = 26.2 bits (56), Expect(2) = 5e-55
 Identities = 9/12 (75%), Positives = 11/12 (91%)
 Frame = -2

Query: 37   EMNPEKCTFGVT 2
            ++NP KCTFGVT
Sbjct: 966  KLNPSKCTFGVT 977


>gb|ABW81060.1| GagPol3 [Arabidopsis lyrata subsp. lyrata]
          Length = 1103

 Score =  207 bits (526), Expect(2) = 1e-52
 Identities = 96/196 (48%), Positives = 139/196 (70%)
 Frame = -3

Query: 621 CHHLHMREDAKPVRQKMRSIRPKYAEGIREEIARLKGAGIIREVEFTDWLSNIVAVPKKN 442
           CH L++    KPV+QK R +  + A+ + +E+ +L   G IREV++ +W++N V V KKN
Sbjct: 10  CHELNVDPSFKPVKQKRRKLGVERAKIVNDEVDKLLKIGSIREVQYPEWVANTVVVKKKN 69

Query: 441 GKVRMCVDFTDVNMECPKDSYPMPREDELLDRTAGFKIFSFMDASMGYNQVAMYGPDQEK 262
           GK R+C+DFTD+N  CPKDS+P+P  D L++ TAG ++ +FMDA  G NQ+ M   DQEK
Sbjct: 70  GKDRVCIDFTDLNKACPKDSFPLPHIDRLVESTAGNELLTFMDAFSGSNQIMMNPEDQEK 129

Query: 261 TSFVVEGGTYCYTRMLFGLKNARATFQRLGERMFASKIRRGIEIYIDDMVEKSMSEEEHI 82
           TSF+ + G YCY  M FGLKNA AT+QRL  +MF + + + +E+YIDDM+ KS+ +E+H+
Sbjct: 130 TSFITDRGIYCYKVMPFGLKNAGATYQRLVNKMFHNHLGKTMEVYIDDMLVKSLKKEDHV 189

Query: 81  EGLRETFEILHKYNLK 34
           + L E F IL+KY +K
Sbjct: 190 KHLEECFGILNKYQMK 205



 Score = 25.8 bits (55), Expect(2) = 1e-52
 Identities = 9/13 (69%), Positives = 11/13 (84%)
 Frame = -2

Query: 43  QFEMNPEKCTFGV 5
           Q ++NP KCTFGV
Sbjct: 203 QMKLNPAKCTFGV 215


>emb|CAN68524.1| hypothetical protein VITISV_025157 [Vitis vinifera]
          Length = 1003

 Score =  210 bits (534), Expect(2) = 1e-52
 Identities = 99/197 (50%), Positives = 137/197 (69%)
 Frame = -3

Query: 624 ACHHLHMREDAKPVRQKMRSIRPKYAEGIREEIARLKGAGIIREVEFTDWLSNIVAVPKK 445
           A H L++   A+PVRQ++R   P     IR EI +L  AG IREV + DWL+N+V VPKK
Sbjct: 9   ASHRLNVFSTARPVRQRIRRFHPDRQRVIRNEIDKLLEAGFIREVSYPDWLANVVVVPKK 68

Query: 444 NGKVRMCVDFTDVNMECPKDSYPMPREDELLDRTAGFKIFSFMDASMGYNQVAMYGPDQE 265
            GK R+CVD+T++N  CPKDS+P+PR D+++D T+G  + SF+DA  GY+Q+ M+  D+E
Sbjct: 69  EGKWRVCVDYTNLNNACPKDSFPLPRIDQIVDSTSGQGMLSFLDAFSGYHQIPMFPDDEE 128

Query: 264 KTSFVVEGGTYCYTRMLFGLKNARATFQRLGERMFASKIRRGIEIYIDDMVEKSMSEEEH 85
           KT+F+   G YCY  M FGLKNA AT+QRL  ++F   I   +E+YIDD+V KS + E+H
Sbjct: 129 KTAFITPHGLYCYKVMPFGLKNASATYQRLMTKIFKPLIDHSVEVYIDDIVVKSKTREQH 188

Query: 84  IEGLRETFEILHKYNLK 34
           I  L+E F +L KY +K
Sbjct: 189 ILHLQEVFHLLRKYGMK 205



 Score = 22.7 bits (47), Expect(2) = 1e-52
 Identities = 7/12 (58%), Positives = 10/12 (83%)
 Frame = -2

Query: 37  EMNPEKCTFGVT 2
           ++NP KC FGV+
Sbjct: 205 KLNPSKCAFGVS 216


>emb|CAN69925.1| hypothetical protein VITISV_027208 [Vitis vinifera]
          Length = 982

 Score =  210 bits (534), Expect(2) = 1e-52
 Identities = 98/197 (49%), Positives = 140/197 (71%)
 Frame = -3

Query: 624 ACHHLHMREDAKPVRQKMRSIRPKYAEGIREEIARLKGAGIIREVEFTDWLSNIVAVPKK 445
           A H L++   A+PVRQK+R   P   + IR EI +L  +G IRE+ + DWL+N+V VPKK
Sbjct: 9   ASHRLNVFSTARPVRQKIRRFHPDRQKVIRNEIDKLLESGFIREIAYLDWLANVVVVPKK 68

Query: 444 NGKVRMCVDFTDVNMECPKDSYPMPREDELLDRTAGFKIFSFMDASMGYNQVAMYGPDQE 265
            GK R+CVD+T++N  CPKDS+P+PR D+++D TAG ++ SF+DA  GY+Q+ M   D+E
Sbjct: 69  EGKWRVCVDYTNLNNACPKDSFPLPRIDQIVDSTAGQRMLSFLDAFSGYHQIPMSPADEE 128

Query: 264 KTSFVVEGGTYCYTRMLFGLKNARATFQRLGERMFASKIRRGIEIYIDDMVEKSMSEEEH 85
           KT+F+   G YCY  M FGLKNA AT+QRL  ++F   I   +E+YIDD+V KS + EEH
Sbjct: 129 KTAFITPHGLYCYKVMPFGLKNAGATYQRLMTKIFKPLIGHTVEVYIDDIVVKSKTLEEH 188

Query: 84  IEGLRETFEILHKYNLK 34
           ++ L+E F +L +Y++K
Sbjct: 189 VQHLQEVFHLLRRYDMK 205



 Score = 22.7 bits (47), Expect(2) = 1e-52
 Identities = 7/12 (58%), Positives = 10/12 (83%)
 Frame = -2

Query: 37  EMNPEKCTFGVT 2
           ++NP KC FGV+
Sbjct: 205 KLNPSKCAFGVS 216