BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00020068
         (651 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002321063.1| predicted protein [Populus trichocarpa] gi|2...   150   2e-34
ref|XP_002512800.1| DNA cross-link repair protein pso2/snm1, put...   146   3e-33
ref|XP_003624539.1| DNA cross-link repair protein SNM1 [Medicago...   145   6e-33
ref|XP_003548485.1| PREDICTED: DNA cross-link repair protein SNM...   144   1e-32
gb|EEE60929.1| hypothetical protein OsJ_14663 [Oryza sativa Japo...   144   1e-32

>ref|XP_002321063.1| predicted protein [Populus trichocarpa] gi|222861836|gb|EEE99378.1|
           predicted protein [Populus trichocarpa]
          Length = 382

 Score =  150 bits (379), Expect = 2e-34
 Identities = 69/81 (85%), Positives = 76/81 (93%)
 Frame = +3

Query: 3   LAFRPTGWTYSETLGNQLDLIRPTSKGNITIYGVPYSEHSSFFELREFVQFLKPDKIIPT 182
           LAFRPTGWTYSE LG +LDLIRP+++GNITIYGVPYSEHSSF ELR+FV+FLKPDKIIPT
Sbjct: 301 LAFRPTGWTYSEGLGRELDLIRPSTRGNITIYGVPYSEHSSFTELRDFVEFLKPDKIIPT 360

Query: 183 VNVGNAANRDKMQSYFREWMK 245
           VNVGN  NRDKMQSYFREW+K
Sbjct: 361 VNVGNPDNRDKMQSYFREWLK 381


>ref|XP_002512800.1| DNA cross-link repair protein pso2/snm1, putative [Ricinus
           communis] gi|223547811|gb|EEF49303.1| DNA cross-link
           repair protein pso2/snm1, putative [Ricinus communis]
          Length = 493

 Score =  146 bits (369), Expect = 3e-33
 Identities = 66/81 (81%), Positives = 75/81 (92%)
 Frame = +3

Query: 3   LAFRPTGWTYSETLGNQLDLIRPTSKGNITIYGVPYSEHSSFFELREFVQFLKPDKIIPT 182
           LAFRPTGWTYSE +G +LDLIRP SKGN+TIYGVPYSEHSSF EL+EFV+FLKPDKIIPT
Sbjct: 412 LAFRPTGWTYSENVGKKLDLIRPISKGNVTIYGVPYSEHSSFTELKEFVEFLKPDKIIPT 471

Query: 183 VNVGNAANRDKMQSYFREWMK 245
           VNVGN  NR+KMQS+FREW++
Sbjct: 472 VNVGNPTNREKMQSHFREWLE 492


>ref|XP_003624539.1| DNA cross-link repair protein SNM1 [Medicago truncatula]
           gi|87241310|gb|ABD33168.1| DNA repair
           metallo-beta-lactamase [Medicago truncatula]
           gi|355499554|gb|AES80757.1| DNA cross-link repair
           protein SNM1 [Medicago truncatula]
          Length = 511

 Score =  145 bits (366), Expect = 6e-33
 Identities = 66/81 (81%), Positives = 74/81 (91%)
 Frame = +3

Query: 3   LAFRPTGWTYSETLGNQLDLIRPTSKGNITIYGVPYSEHSSFFELREFVQFLKPDKIIPT 182
           LAFRPTGWT+SE +GN L LI+P S GNIT YGVPYSEHSSF ELR+FVQFL+PDKIIPT
Sbjct: 430 LAFRPTGWTFSEKIGNDLALIKPVSNGNITTYGVPYSEHSSFTELRDFVQFLRPDKIIPT 489

Query: 183 VNVGNAANRDKMQSYFREWMK 245
           VNVGNAANR+KMQSYFR+W+K
Sbjct: 490 VNVGNAANREKMQSYFRDWLK 510


>ref|XP_003548485.1| PREDICTED: DNA cross-link repair protein SNM1-like [Glycine max]
          Length = 505

 Score =  144 bits (363), Expect = 1e-32
 Identities = 65/81 (80%), Positives = 75/81 (92%)
 Frame = +3

Query: 3   LAFRPTGWTYSETLGNQLDLIRPTSKGNITIYGVPYSEHSSFFELREFVQFLKPDKIIPT 182
           LAFRPTGWT+SE + N L+LI+P SKGNITIYGVPYSEHSSF EL++FVQ L+PDKIIPT
Sbjct: 424 LAFRPTGWTFSEKISNDLELIKPVSKGNITIYGVPYSEHSSFSELQDFVQVLRPDKIIPT 483

Query: 183 VNVGNAANRDKMQSYFREWMK 245
           VNVGNAANR+KMQSYFR+W+K
Sbjct: 484 VNVGNAANREKMQSYFRDWLK 504


>gb|EEE60929.1| hypothetical protein OsJ_14663 [Oryza sativa Japonica Group]
          Length = 517

 Score =  144 bits (363), Expect = 1e-32
 Identities = 65/81 (80%), Positives = 75/81 (92%)
 Frame = +3

Query: 3   LAFRPTGWTYSETLGNQLDLIRPTSKGNITIYGVPYSEHSSFFELREFVQFLKPDKIIPT 182
           LAFRPTGWT+SE  GNQLDLI+P+S+G ITIYGVPYSEHSSF ELREFV FL+P K+IPT
Sbjct: 399 LAFRPTGWTFSEETGNQLDLIKPSSRGKITIYGVPYSEHSSFSELREFVMFLRPQKVIPT 458

Query: 183 VNVGNAANRDKMQSYFREWMK 245
           VNVGNAA+RDKMQ++FREW+K
Sbjct: 459 VNVGNAASRDKMQAHFREWLK 479