BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00020005
         (1557 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_003536728.1| PREDICTED: DDB1- and CUL4-associated factor ...   618   e-174
ref|XP_003555854.1| PREDICTED: DDB1- and CUL4-associated factor ...   615   e-173
ref|XP_003555853.1| PREDICTED: DDB1- and CUL4-associated factor ...   614   e-173
ref|XP_002521240.1| WD-repeat protein, putative [Ricinus communi...   612   e-172
gb|ACU19502.1| unknown [Glycine max]                                  610   e-172

>ref|XP_003536728.1| PREDICTED: DDB1- and CUL4-associated factor 8-like [Glycine max]
          Length = 497

 Score =  618 bits (1594), Expect = e-174
 Identities = 299/423 (70%), Positives = 347/423 (82%), Gaps = 4/423 (0%)
 Frame = -3

Query: 1417 LMAKRLKT---NGDVVKLWKREVGEMPPRNFALQFGASEDLVLRLDVYRKLEKHRGCVNT 1247
            +M KR  T   N  +  L  RE+G +PPRNFAL+ GASEDLVLRL++ R L+KHRGCVNT
Sbjct: 1    MMNKRPLTAVYNKAIPDLCNRELGHLPPRNFALRLGASEDLVLRLELLRNLQKHRGCVNT 60

Query: 1246 VSFSADGDILVSGSDDRMVVLWDWDAGKVRLSFHSGHHNNIFQAKIMPCSDDRSIVTCAA 1067
            VSF+ADGD LVSGSDD  V+LWDW+ G+++LSFHSGH NN+FQAK MP S DR+IVTCAA
Sbjct: 61   VSFNADGDTLVSGSDDWGVILWDWETGRIKLSFHSGHSNNVFQAKFMPHSHDRTIVTCAA 120

Query: 1066 DGQVRHARIPENGIVETTMLSKHQGRAHKLAIEPGSPHIFYTCGEDGLVQHFDLRTGTST 887
            DGQVRHA+I ENG VET  L+KHQGRAHKLA+EPGSPHIFYTCGEDGLVQHFDLRTG +T
Sbjct: 121  DGQVRHAQILENGRVETKCLAKHQGRAHKLAVEPGSPHIFYTCGEDGLVQHFDLRTGAAT 180

Query: 886  ELFTCKSFSDKSRYMPIVPLNTIAIDPRNPNLFAVAGSDEYARLYDIRKYKWDGSGNFGQ 707
            ELFTC+   D+  YMP++ LN IAIDPRNPNLFAVAGSDEYARLYDIR+YKWDGS +FGQ
Sbjct: 181  ELFTCQPIKDRWSYMPVIHLNAIAIDPRNPNLFAVAGSDEYARLYDIRRYKWDGSTDFGQ 240

Query: 706  PADCFCPTHLISDEQVGITGVAFSDHSELLVSYNDEHIYLFTRDMGLGTDPV-PASPSSV 530
            P D FCP HLI D+QVGITG+AFS+  ELLVSYNDE IYLFT+DMGLG +P  P SP S+
Sbjct: 241  PTDFFCPPHLIGDQQVGITGLAFSEQRELLVSYNDELIYLFTQDMGLGPNPPDPGSPKSM 300

Query: 529  ESNVSGMEHNPALAASPSSTEVDEISGPRVYKGHRNCDTVKGVTFFGPRDEYVVSGSDCG 350
             S+ S +  +    +S S+ + D+   P+V+KGHRNC+TVKGV FFGP+ EYVVSGSDCG
Sbjct: 301  NSDASEIGFSHGSVSSQSNMDADDKITPQVFKGHRNCETVKGVNFFGPKCEYVVSGSDCG 360

Query: 349  RIFIWRKKDGELMRVMEADKHVVNCIEPHPHVPHLASSGIEHDIKIWTPNANNKAALPIN 170
            RIFIW+KK G+L+RVMEADKHVVNCIE HPH   LASSGIE+DIKIWTP A  KA LP N
Sbjct: 361  RIFIWKKKGGQLIRVMEADKHVVNCIESHPHTMVLASSGIENDIKIWTPKALEKATLPKN 420

Query: 169  VEQ 161
            +EQ
Sbjct: 421  IEQ 423


>ref|XP_003555854.1| PREDICTED: DDB1- and CUL4-associated factor 8-like isoform 2 [Glycine
            max]
          Length = 490

 Score =  615 bits (1585), Expect = e-173
 Identities = 295/407 (72%), Positives = 339/407 (83%), Gaps = 1/407 (0%)
 Frame = -3

Query: 1375 LWKREVGEMPPRNFALQFGASEDLVLRLDVYRKLEKHRGCVNTVSFSADGDILVSGSDDR 1196
            L  REVG + PRNFAL+ G+SEDLVLRL + R L+KHRGCVN VSF+ADGDILVSGSDD 
Sbjct: 10   LCNREVGHLSPRNFALRLGSSEDLVLRLQLLRNLQKHRGCVNAVSFNADGDILVSGSDDC 69

Query: 1195 MVVLWDWDAGKVRLSFHSGHHNNIFQAKIMPCSDDRSIVTCAADGQVRHARIPENGIVET 1016
             ++LWDW+ G++RLSFHSGH NN+FQAKIMP SDDR+IVTCAADGQVRHA++ ENG VET
Sbjct: 70   GIILWDWETGRIRLSFHSGHSNNVFQAKIMPHSDDRTIVTCAADGQVRHAQLLENGRVET 129

Query: 1015 TMLSKHQGRAHKLAIEPGSPHIFYTCGEDGLVQHFDLRTGTSTELFTCKSFSDKSRYMPI 836
              L+KHQGRAHKLAIEPGSPHIFYTCGEDGLVQ FDLRTG +TELFTC+   D+  YMP+
Sbjct: 130  KCLAKHQGRAHKLAIEPGSPHIFYTCGEDGLVQRFDLRTGAATELFTCQPIKDRWSYMPV 189

Query: 835  VPLNTIAIDPRNPNLFAVAGSDEYARLYDIRKYKWDGSGNFGQPADCFCPTHLISDEQVG 656
            + LN IAIDPRNPNLFAVAGSDEYARLYDIRKYKWDGS +FGQP + FCP HLI D+QVG
Sbjct: 190  IHLNAIAIDPRNPNLFAVAGSDEYARLYDIRKYKWDGSTDFGQPTNFFCPPHLIGDQQVG 249

Query: 655  ITGVAFSDHSELLVSYNDEHIYLFTRDMGLGTDPV-PASPSSVESNVSGMEHNPALAASP 479
            ITG+AFS+  ELLVSYNDE IYLFT+DMGLG +P  P SP S+ S+ S +  +    +S 
Sbjct: 250  ITGLAFSELRELLVSYNDELIYLFTQDMGLGPNPPDPVSPKSMNSDASEIGFSHGSVSSQ 309

Query: 478  SSTEVDEISGPRVYKGHRNCDTVKGVTFFGPRDEYVVSGSDCGRIFIWRKKDGELMRVME 299
            S  + DE   P+V+KGHRNC+TVKGV FFGP+ EYVVSGSDCGRIFIW+KK G+L+RVME
Sbjct: 310  SKMDADEKVTPQVFKGHRNCETVKGVNFFGPKCEYVVSGSDCGRIFIWKKKSGQLIRVME 369

Query: 298  ADKHVVNCIEPHPHVPHLASSGIEHDIKIWTPNANNKAALPINVEQV 158
            ADK+VVNCIE HPH   LASSGIEHDIKIWTP A  KA LP N+EQ+
Sbjct: 370  ADKYVVNCIESHPHTMVLASSGIEHDIKIWTPKALEKATLPKNIEQL 416


>ref|XP_003555853.1| PREDICTED: DDB1- and CUL4-associated factor 8-like isoform 1 [Glycine
            max]
          Length = 489

 Score =  614 bits (1584), Expect = e-173
 Identities = 295/406 (72%), Positives = 338/406 (83%), Gaps = 1/406 (0%)
 Frame = -3

Query: 1375 LWKREVGEMPPRNFALQFGASEDLVLRLDVYRKLEKHRGCVNTVSFSADGDILVSGSDDR 1196
            L  REVG + PRNFAL+ G+SEDLVLRL + R L+KHRGCVN VSF+ADGDILVSGSDD 
Sbjct: 10   LCNREVGHLSPRNFALRLGSSEDLVLRLQLLRNLQKHRGCVNAVSFNADGDILVSGSDDC 69

Query: 1195 MVVLWDWDAGKVRLSFHSGHHNNIFQAKIMPCSDDRSIVTCAADGQVRHARIPENGIVET 1016
             ++LWDW+ G++RLSFHSGH NN+FQAKIMP SDDR+IVTCAADGQVRHA++ ENG VET
Sbjct: 70   GIILWDWETGRIRLSFHSGHSNNVFQAKIMPHSDDRTIVTCAADGQVRHAQLLENGRVET 129

Query: 1015 TMLSKHQGRAHKLAIEPGSPHIFYTCGEDGLVQHFDLRTGTSTELFTCKSFSDKSRYMPI 836
              L+KHQGRAHKLAIEPGSPHIFYTCGEDGLVQ FDLRTG +TELFTC+   D+  YMP+
Sbjct: 130  KCLAKHQGRAHKLAIEPGSPHIFYTCGEDGLVQRFDLRTGAATELFTCQPIKDRWSYMPV 189

Query: 835  VPLNTIAIDPRNPNLFAVAGSDEYARLYDIRKYKWDGSGNFGQPADCFCPTHLISDEQVG 656
            + LN IAIDPRNPNLFAVAGSDEYARLYDIRKYKWDGS +FGQP + FCP HLI D+QVG
Sbjct: 190  IHLNAIAIDPRNPNLFAVAGSDEYARLYDIRKYKWDGSTDFGQPTNFFCPPHLIGDQQVG 249

Query: 655  ITGVAFSDHSELLVSYNDEHIYLFTRDMGLGTDPV-PASPSSVESNVSGMEHNPALAASP 479
            ITG+AFS+  ELLVSYNDE IYLFT+DMGLG +P  P SP S+ S+ S +  +    +S 
Sbjct: 250  ITGLAFSELRELLVSYNDELIYLFTQDMGLGPNPPDPVSPKSMNSDASEIGFSHGSVSSQ 309

Query: 478  SSTEVDEISGPRVYKGHRNCDTVKGVTFFGPRDEYVVSGSDCGRIFIWRKKDGELMRVME 299
            S  + DE   P+V+KGHRNC+TVKGV FFGP+ EYVVSGSDCGRIFIW+KK G+L+RVME
Sbjct: 310  SKMDADEKVTPQVFKGHRNCETVKGVNFFGPKCEYVVSGSDCGRIFIWKKKSGQLIRVME 369

Query: 298  ADKHVVNCIEPHPHVPHLASSGIEHDIKIWTPNANNKAALPINVEQ 161
            ADK+VVNCIE HPH   LASSGIEHDIKIWTP A  KA LP N+EQ
Sbjct: 370  ADKYVVNCIESHPHTMVLASSGIEHDIKIWTPKALEKATLPKNIEQ 415


>ref|XP_002521240.1| WD-repeat protein, putative [Ricinus communis]
            gi|223539508|gb|EEF41096.1| WD-repeat protein, putative
            [Ricinus communis]
          Length = 482

 Score =  612 bits (1577), Expect = e-172
 Identities = 295/418 (70%), Positives = 343/418 (82%), Gaps = 2/418 (0%)
 Frame = -3

Query: 1414 MAKRLKTNGD--VVKLWKREVGEMPPRNFALQFGASEDLVLRLDVYRKLEKHRGCVNTVS 1241
            M KR +TN D  V+ +W+REVGE+  RNFA +  ASEDLVLRLD+Y+KL+KHRGCVNTVS
Sbjct: 1    MKKRARTNPDKAVLNVWQREVGELSTRNFAHRLAASEDLVLRLDLYKKLDKHRGCVNTVS 60

Query: 1240 FSADGDILVSGSDDRMVVLWDWDAGKVRLSFHSGHHNNIFQAKIMPCSDDRSIVTCAADG 1061
            F+A+GDILVSGSDDR V+LWDW++G+++LSFHSGH  N+FQAKIMP +DDRSIVTCAADG
Sbjct: 61   FNANGDILVSGSDDRRVILWDWESGRIKLSFHSGHTKNVFQAKIMPYTDDRSIVTCAADG 120

Query: 1060 QVRHARIPENGIVETTMLSKHQGRAHKLAIEPGSPHIFYTCGEDGLVQHFDLRTGTSTEL 881
            QVR A+I E G VETT+L+KHQGRAHKLAIEPGSP+I YTCGEDGLVQHFDLRT  +TEL
Sbjct: 121  QVRFAQILECGAVETTLLAKHQGRAHKLAIEPGSPYILYTCGEDGLVQHFDLRTRRATEL 180

Query: 880  FTCKSFSDKSRYMPIVPLNTIAIDPRNPNLFAVAGSDEYARLYDIRKYKWDGSGNFGQPA 701
            F+C+   D+  YMP+V LN I IDPRNPNLFAVAGSDEY RLYDIR YKWDGS  FGQP 
Sbjct: 181  FSCRPIDDRREYMPVVHLNAITIDPRNPNLFAVAGSDEYTRLYDIRMYKWDGSTEFGQPT 240

Query: 700  DCFCPTHLISDEQVGITGVAFSDHSELLVSYNDEHIYLFTRDMGLGTDPVPASPSSVESN 521
            D FCP HLI DE+VGITG++FSD SELLVSYNDE IYLFTRDMGLG +P P+SP S+ S+
Sbjct: 241  DYFCPPHLIGDERVGITGLSFSDQSELLVSYNDELIYLFTRDMGLGPNPDPSSPVSIGSS 300

Query: 520  VSGMEHNPALAASPSSTEVDEISGPRVYKGHRNCDTVKGVTFFGPRDEYVVSGSDCGRIF 341
                      A   +  +VD    P+VY+GH+NC+TVKGV+FFGP  EYVVSGSDCGRIF
Sbjct: 301  ----------AGELACMDVDGKVSPQVYEGHQNCETVKGVSFFGPGCEYVVSGSDCGRIF 350

Query: 340  IWRKKDGELMRVMEADKHVVNCIEPHPHVPHLASSGIEHDIKIWTPNANNKAALPINV 167
            IW+KK GEL+R MEADKHVVNCIEPHPH   LASSGIE+DIK+WTP A  +A LP N+
Sbjct: 351  IWKKKGGELIRAMEADKHVVNCIEPHPHATVLASSGIENDIKMWTPKAIERATLPTNI 408


>gb|ACU19502.1| unknown [Glycine max]
          Length = 489

 Score =  610 bits (1573), Expect = e-172
 Identities = 294/406 (72%), Positives = 336/406 (82%), Gaps = 1/406 (0%)
 Frame = -3

Query: 1375 LWKREVGEMPPRNFALQFGASEDLVLRLDVYRKLEKHRGCVNTVSFSADGDILVSGSDDR 1196
            L  REVG + PRNFAL+  +SEDLVLRL + R L+KHRGCVN VSF+ADGDILVSGSDD 
Sbjct: 10   LCNREVGHLSPRNFALRLDSSEDLVLRLQLLRNLQKHRGCVNAVSFNADGDILVSGSDDC 69

Query: 1195 MVVLWDWDAGKVRLSFHSGHHNNIFQAKIMPCSDDRSIVTCAADGQVRHARIPENGIVET 1016
             ++LWDW+ G++RLSFHSGH NN+FQAKIMP SDDR+IVTCAADGQVRHA++ ENG VET
Sbjct: 70   GIILWDWETGRIRLSFHSGHSNNVFQAKIMPHSDDRTIVTCAADGQVRHAQLLENGRVET 129

Query: 1015 TMLSKHQGRAHKLAIEPGSPHIFYTCGEDGLVQHFDLRTGTSTELFTCKSFSDKSRYMPI 836
              L+KHQGRAHKLAIEPGSPHIFYTCGEDGLVQ FDLRTG +TELFTC+   D+  YMP+
Sbjct: 130  KCLAKHQGRAHKLAIEPGSPHIFYTCGEDGLVQRFDLRTGAATELFTCQPIKDRWSYMPV 189

Query: 835  VPLNTIAIDPRNPNLFAVAGSDEYARLYDIRKYKWDGSGNFGQPADCFCPTHLISDEQVG 656
            + LN IAIDPRNPNLFAVAGSDEYARLYDIRKYKWDGS  FGQP + FCP HLI D+QVG
Sbjct: 190  IHLNAIAIDPRNPNLFAVAGSDEYARLYDIRKYKWDGSTGFGQPTNFFCPPHLIGDQQVG 249

Query: 655  ITGVAFSDHSELLVSYNDEHIYLFTRDMGLGTDPV-PASPSSVESNVSGMEHNPALAASP 479
            ITG+AFS+  ELLVSYNDE IYLFT+DMGLG +P  P SP S+ S+ S +  +    +S 
Sbjct: 250  ITGLAFSELRELLVSYNDELIYLFTQDMGLGPNPPDPVSPKSMNSDASEIGFSHGSVSSQ 309

Query: 478  SSTEVDEISGPRVYKGHRNCDTVKGVTFFGPRDEYVVSGSDCGRIFIWRKKDGELMRVME 299
            S  + DE   P+V+KGHRNC+TVKGV FFGP+ EYVVSGSDCGRIFIW+KK G+L+RVME
Sbjct: 310  SKMDADEKVTPQVFKGHRNCETVKGVNFFGPKCEYVVSGSDCGRIFIWKKKSGQLIRVME 369

Query: 298  ADKHVVNCIEPHPHVPHLASSGIEHDIKIWTPNANNKAALPINVEQ 161
            ADK+VVNCIE HPH   LASSGIEHDIKIWTP A  KA LP N+EQ
Sbjct: 370  ADKYVVNCIEFHPHTMVLASSGIEHDIKIWTPKALEKATLPKNIEQ 415