BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00020000
         (312 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002273309.1| PREDICTED: F-box protein SKIP24 [Vitis vinif...    77   2e-12
emb|CAN62570.1| hypothetical protein VITISV_029090 [Vitis vinifera]    76   3e-12
ref|XP_002319735.1| f-box family protein [Populus trichocarpa] g...    73   2e-11
ref|XP_003624758.1| F-box protein SKIP24 [Medicago truncatula] g...    71   1e-10
gb|AAF99761.1|AC003981_11 F22O13.19 [Arabidopsis thaliana]             69   4e-10

>ref|XP_002273309.1| PREDICTED: F-box protein SKIP24 [Vitis vinifera]
           gi|296085868|emb|CBI31192.3| unnamed protein product
           [Vitis vinifera]
          Length = 256

 Score = 76.6 bits (187), Expect = 2e-12
 Identities = 39/76 (51%), Positives = 54/76 (71%), Gaps = 1/76 (1%)
 Frame = +1

Query: 1   PVESRVKGVEMEIRVCKQQIKVLDKGYREELQRLDEAKRKLVSMVYHPLRDYGSIEA-VD 177
           PV++R+  +EME+++C+QQI   D  YR E +RLD AK +LV M YHPLRDY S  + VD
Sbjct: 167 PVDARINALEMELKLCRQQIAGSDNAYRNEKRRLDAAKERLVVMKYHPLRDYKSTSSGVD 226

Query: 178 ECKGKTKRKKSKQCSE 225
           EC   ++RKK K+ S+
Sbjct: 227 EC--NSQRKKLKRGSD 240


>emb|CAN62570.1| hypothetical protein VITISV_029090 [Vitis vinifera]
          Length = 256

 Score = 75.9 bits (185), Expect = 3e-12
 Identities = 39/76 (51%), Positives = 53/76 (69%), Gaps = 1/76 (1%)
 Frame = +1

Query: 1   PVESRVKGVEMEIRVCKQQIKVLDKGYREELQRLDEAKRKLVSMVYHPLRDYGSIEA-VD 177
           PV++R+  +EME+ +C+QQI   D  YR E +RLD AK +LV M YHPLRDY S  + VD
Sbjct: 167 PVDARINALEMELXLCRQQIAGXDNAYRNEKRRLDAAKERLVIMKYHPLRDYKSTSSGVD 226

Query: 178 ECKGKTKRKKSKQCSE 225
           EC   ++RKK K+ S+
Sbjct: 227 EC--NSQRKKLKRGSD 240


>ref|XP_002319735.1| f-box family protein [Populus trichocarpa]
           gi|222858111|gb|EEE95658.1| f-box family protein
           [Populus trichocarpa]
          Length = 273

 Score = 73.2 bits (178), Expect = 2e-11
 Identities = 40/84 (47%), Positives = 55/84 (65%)
 Frame = +1

Query: 1   PVESRVKGVEMEIRVCKQQIKVLDKGYREELQRLDEAKRKLVSMVYHPLRDYGSIEAVDE 180
           PVESRV  +EME+++C+Q+I   DK YR+E +RL+ A  +L SM YHPLRD+  I + D+
Sbjct: 166 PVESRVHSLEMELKLCRQRISGFDKAYRDEKRRLELATEQLASMKYHPLRDHKLINSGDK 225

Query: 181 CKGKTKRKKSKQCSEKFCSSGDKC 252
            + K KRKK K  +   C S   C
Sbjct: 226 -EHKKKRKKLK--TSVICKSLKLC 246


>ref|XP_003624758.1| F-box protein SKIP24 [Medicago truncatula]
           gi|355499773|gb|AES80976.1| F-box protein SKIP24
           [Medicago truncatula]
          Length = 241

 Score = 70.9 bits (172), Expect = 1e-10
 Identities = 36/74 (48%), Positives = 49/74 (66%)
 Frame = +1

Query: 1   PVESRVKGVEMEIRVCKQQIKVLDKGYREELQRLDEAKRKLVSMVYHPLRDYGSIEAVDE 180
           P ESR++ +EME+R+CKQ I  L+K YR+E  RLD AK +L S+ YHPLR +  +    E
Sbjct: 160 PAESRIRTLEMELRLCKQHILGLEKSYRDEKCRLDNAKEELESLKYHPLRKHKPVGG-GE 218

Query: 181 CKGKTKRKKSKQCS 222
            + K KRK  K C+
Sbjct: 219 NEHKVKRKMLKSCN 232


>gb|AAF99761.1|AC003981_11 F22O13.19 [Arabidopsis thaliana]
          Length = 313

 Score = 68.9 bits (167), Expect = 4e-10
 Identities = 36/71 (50%), Positives = 49/71 (69%), Gaps = 1/71 (1%)
 Frame = +1

Query: 1   PVESRVKGVEMEIRVCKQQIKVLDKGYREELQRLDEAKRKLVSMVYHPLRDYGSIEAVDE 180
           PVE R++ +EME+++CKQQI  L++  RE   R D A ++L SM YHPLRDY SI   D+
Sbjct: 152 PVEGRLRALEMEMKLCKQQIMGLNRALREVKHRYDIAIKELESMKYHPLRDYKSIRNGDQ 211

Query: 181 -CKGKTKRKKS 210
              GKTK+ K+
Sbjct: 212 GSNGKTKKLKT 222