BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00019982
         (371 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002269754.2| PREDICTED: pentatricopeptide repeat-containi...    82   4e-14
ref|XP_002525492.1| pentatricopeptide repeat-containing protein,...    81   8e-14
ref|XP_003516739.1| PREDICTED: LOW QUALITY PROTEIN: pentatricope...    74   1e-11
ref|XP_003610897.1| Pentatricopeptide repeat-containing protein ...    70   1e-10
gb|AEB39779.1| pentatricopeptide repeat protein 98 [Funaria hygr...    58   9e-07

>ref|XP_002269754.2| PREDICTED: pentatricopeptide repeat-containing protein
           At1g71420-like [Vitis vinifera]
          Length = 741

 Score = 82.4 bits (202), Expect = 4e-14
 Identities = 43/87 (49%), Positives = 54/87 (62%), Gaps = 6/87 (6%)
 Frame = -3

Query: 246 LQTLRTLCARDQLDEALLLFYAMSS-----FDSQTYATLIHACARNLRVNEGRALHHHIL 82
           L  +R LC+R  L EAL LFY+++          TYA L  ACAR   + EG+ALH H+ 
Sbjct: 31  LHHIRLLCSRGHLQEALKLFYSITPPPPLVHSHHTYAALFQACARRSSLPEGQALHRHMF 90

Query: 81  FLN-HQPINLFLTNHLINMYAKCGCLD 4
             N +   NLFLTNH++NMYAKCG LD
Sbjct: 91  LHNPNSDFNLFLTNHVVNMYAKCGSLD 117


>ref|XP_002525492.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223535171|gb|EEF36850.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 542

 Score = 81.3 bits (199), Expect = 8e-14
 Identities = 44/85 (51%), Positives = 55/85 (64%), Gaps = 7/85 (8%)
 Frame = -3

Query: 237 LRTLCARDQLDEALLLFYAMS---SFDSQTYATLIHACARNLRVNEGRALHHHILFLN-- 73
           LR L  R Q+DEAL LFY          QTYATL HACAR+  + +G  LH H+L  N  
Sbjct: 34  LRFLSTRGQIDEALSLFYNAPLPLPHSQQTYATLFHACARHGYLQQGIYLHQHLLLNNKN 93

Query: 72  --HQPINLFLTNHLINMYAKCGCLD 4
             ++P+ +F+TNHLINMYAKCG L+
Sbjct: 94  QGNRPLGVFVTNHLINMYAKCGDLE 118


>ref|XP_003516739.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At1g71420-like [Glycine max]
          Length = 782

 Score = 73.9 bits (180), Expect = 1e-11
 Identities = 37/78 (47%), Positives = 49/78 (62%), Gaps = 1/78 (1%)
 Frame = -3

Query: 237 LRTLCARDQLDEALLLFYAMSSFDSQTYATLIHACARNLRVNEGRALHHHILFLNHQPIN 58
           +R L  +  ++EAL L Y  SS   QTYA+L HACA+   +  G  LHH++L  +    N
Sbjct: 66  IRALSTQGNIEEALSLLYTHSSLSLQTYASLFHACAQKKCLQHGMTLHHYVLHKDPTIQN 125

Query: 57  -LFLTNHLINMYAKCGCL 7
            +FLTNH+INMY KCG L
Sbjct: 126 DVFLTNHIINMYCKCGHL 143


>ref|XP_003610897.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
           gi|355512232|gb|AES93855.1| Pentatricopeptide
           repeat-containing protein [Medicago truncatula]
          Length = 774

 Score = 70.5 bits (171), Expect = 1e-10
 Identities = 38/81 (46%), Positives = 50/81 (61%), Gaps = 3/81 (3%)
 Frame = -3

Query: 237 LRTLCARDQLDEALLLFYAMSSFDSQTYATLIHACARNLRVNEGRALHHHILFLNHQP-- 64
           + TL  +  L++AL L Y   S   Q YA L HACA+   + +G ALHH+I  LN  P  
Sbjct: 54  IHTLSLQGNLEKALSLVYTNPSLTLQDYAFLFHACAQKKYIKQGMALHHYI--LNKHPKI 111

Query: 63  -INLFLTNHLINMYAKCGCLD 4
             ++FLTN+L+NMY KCG LD
Sbjct: 112 QNDIFLTNNLLNMYCKCGHLD 132


>gb|AEB39779.1| pentatricopeptide repeat protein 98 [Funaria hygrometrica]
          Length = 980

 Score = 57.8 bits (138), Expect = 9e-07
 Identities = 31/83 (37%), Positives = 49/83 (59%), Gaps = 4/83 (4%)
 Frame = -3

Query: 237 LRTLCARDQLDEALLLFYAMSS----FDSQTYATLIHACARNLRVNEGRALHHHILFLNH 70
           L  L    QL EA+L+  ++ S       QTY++L+  C ++  + +G  +H+HI F   
Sbjct: 76  LNRLSKAGQLSEAMLVLLSVDSPHIQIHRQTYSSLLQLCIKHKNLGDGERIHNHIKFSKI 135

Query: 69  QPINLFLTNHLINMYAKCGCLDS 1
           QP ++F+ N LI+MYAKCG  +S
Sbjct: 136 QP-DIFMWNMLISMYAKCGNTNS 157