BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00019941
         (341 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002511313.1| pentatricopeptide repeat-containing protein,...    84   1e-14
ref|XP_004138087.1| PREDICTED: pentatricopeptide repeat-containi...    83   3e-14
ref|XP_003550712.1| PREDICTED: pentatricopeptide repeat-containi...    83   3e-14
ref|XP_002277390.1| PREDICTED: pentatricopeptide repeat-containi...    74   1e-11
ref|XP_002877605.1| pentatricopeptide repeat-containing protein ...    74   2e-11

>ref|XP_002511313.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223550428|gb|EEF51915.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 627

 Score = 84.0 bits (206), Expect = 1e-14
 Identities = 40/113 (35%), Positives = 72/113 (63%)
 Frame = -3

Query: 339 MLRILACKETIEDFWGLVKRMSDEGCYTDEDTYRKLRHNLCKDELISDANTLKESYTKMA 160
           MLRIL  K+++++FW  +++M ++G YTDE+TY  +     K+ + SDA   K  + +M 
Sbjct: 132 MLRILVKKDSMKNFWITLRKMKEQGFYTDEETYLTILGVFRKERMDSDAVAFKHFFDRMV 191

Query: 159 QESASDANVKSFVDLVLELDWNDGVTKKLGELEIQLSENVLLRIFTALNRHPL 1
           +E+A D+ VK+ V +V   +W++ V K+L  + I L++N ++R+   L  +PL
Sbjct: 192 EENAMDSVVKNVVSVVSATEWSNEVEKELEGMGILLTDNFVIRVLKELRNYPL 244


>ref|XP_004138087.1| PREDICTED: pentatricopeptide repeat-containing protein At3g48250,
           chloroplastic-like [Cucumis sativus]
           gi|449524136|ref|XP_004169079.1| PREDICTED:
           pentatricopeptide repeat-containing protein At3g48250,
           chloroplastic-like [Cucumis sativus]
          Length = 632

 Score = 82.8 bits (203), Expect = 3e-14
 Identities = 43/113 (38%), Positives = 67/113 (59%)
 Frame = -3

Query: 339 MLRILACKETIEDFWGLVKRMSDEGCYTDEDTYRKLRHNLCKDELISDANTLKESYTKMA 160
           +LRI    E+++ FW  ++ M + G Y DE+TY+ +   L K +  +DA  L   Y +M 
Sbjct: 127 LLRIFVQNESMKLFWITLRLMKERGFYLDEETYKTILGVLRKSKKAADATGLTHFYNRML 186

Query: 159 QESASDANVKSFVDLVLELDWNDGVTKKLGELEIQLSENVLLRIFTALNRHPL 1
           Q++A D+ V+  VD+VL  DW++ V  KL EL I LS+N ++R+   L   PL
Sbjct: 187 QQNAMDSVVQKVVDIVLGSDWSNDVPGKLEELGIALSDNFVIRVLKELRNSPL 239


>ref|XP_003550712.1| PREDICTED: pentatricopeptide repeat-containing protein At3g48250,
           chloroplastic-like [Glycine max]
          Length = 635

 Score = 82.8 bits (203), Expect = 3e-14
 Identities = 38/113 (33%), Positives = 69/113 (61%)
 Frame = -3

Query: 339 MLRILACKETIEDFWGLVKRMSDEGCYTDEDTYRKLRHNLCKDELISDANTLKESYTKMA 160
           ++RILA K+T++ FW  ++ M + G + DE+TY  +     ++++ SD+  L   Y +M 
Sbjct: 133 IVRILAAKDTMKQFWVTLRMMKENGFFLDEETYLTISVGFKREKMDSDSVALTHFYNRML 192

Query: 159 QESASDANVKSFVDLVLELDWNDGVTKKLGELEIQLSENVLLRIFTALNRHPL 1
           +E+A  + V + V ++   +W D V  +L +LEIQLS+N ++R+   L + PL
Sbjct: 193 EENAMQSVVSNVVGIISRSEWGDEVVGELAKLEIQLSDNFVIRVLKELRKTPL 245


>ref|XP_002277390.1| PREDICTED: pentatricopeptide repeat-containing protein At3g48250,
           chloroplastic-like [Vitis vinifera]
          Length = 631

 Score = 73.9 bits (180), Expect = 1e-11
 Identities = 39/113 (34%), Positives = 63/113 (55%)
 Frame = -3

Query: 339 MLRILACKETIEDFWGLVKRMSDEGCYTDEDTYRKLRHNLCKDELISDANTLKESYTKMA 160
           +LR L   E+++ FW  +++M ++G   D++TY  +     K ++ S+   L   Y +M 
Sbjct: 134 ILRSLVHGESMKQFWVTIRKMKEQGFCIDKETYLTILGVFKKGKMASEEVALTHFYNRMV 193

Query: 159 QESASDANVKSFVDLVLELDWNDGVTKKLGELEIQLSENVLLRIFTALNRHPL 1
           QE+A D  VK  V+LV    W+  V KKLGEL+   S+N +L +   L  +PL
Sbjct: 194 QENAMDEVVKKVVELVTMSVWSSEVEKKLGELKNSFSDNFVLHVLRELRGYPL 246


>ref|XP_002877605.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata] gi|297323443|gb|EFH53864.1|
           pentatricopeptide repeat-containing protein [Arabidopsis
           lyrata subsp. lyrata]
          Length = 618

 Score = 73.6 bits (179), Expect = 2e-11
 Identities = 37/113 (32%), Positives = 63/113 (55%)
 Frame = -3

Query: 339 MLRILACKETIEDFWGLVKRMSDEGCYTDEDTYRKLRHNLCKDELISDANTLKESYTKMA 160
           MLRIL  + +++ FW  +  M   G Y DEDTY+ +   L K++  +DA  +   Y +M 
Sbjct: 128 MLRILVQQRSMKRFWMTLSEMKQGGFYLDEDTYKTIYGELNKEKSKADAVAVAHFYERML 187

Query: 159 QESASDANVKSFVDLVLELDWNDGVTKKLGELEIQLSENVLLRIFTALNRHPL 1
           +E+A          +V ++DW+  V ++L E+ + LS+N ++R+   L  HPL
Sbjct: 188 KENAMSVVAGDVSAVVTKVDWSCEVERELQEMNLVLSDNFVIRVLKELREHPL 240