BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00019840
         (575 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AAL59229.1|AF448416_9 gag-pol [Zea mays]                            77   2e-12
gb|AAL79340.1|AC099402_4 Putative 22 kDa kafirin cluster; Ty3-Gy...    76   3e-12
ref|XP_003605752.1| Pol polyprotein [Medicago truncatula] gi|355...    75   6e-12
emb|CAN65047.1| hypothetical protein VITISV_010808 [Vitis vinifera]    74   1e-11
gb|ABI34339.1| Polyprotein, 3'-partial, putative [Solanum demissum]    73   3e-11

>gb|AAL59229.1|AF448416_9 gag-pol [Zea mays]
          Length = 1470

 Score = 77.4 bits (189), Expect = 2e-12
 Identities = 56/183 (30%), Positives = 90/183 (49%), Gaps = 27/183 (14%)
 Frame = +3

Query: 6   EFMTLEQGSMTVTEYDIKFRQLLRFASDMYLSDERRARKFEDGLVRPLRKAVKGRQFKTY 185
           EF++L QG+M+V+EY  +F QL R+A +   +DE+R  +F +GL+ PL   ++   F  +
Sbjct: 130 EFLSLTQGNMSVSEYRDRFTQLSRYAPEEVDTDEKRQERFLEGLIGPLNYQLQSHTFPNF 189

Query: 186 NDVVECARTME------LDH--------ILHDRPNDASKTDSKKENK--DKYDNYSKGFK 317
             ++  A  +E       DH          + RPN+A  +  +  N+  + Y     G +
Sbjct: 190 QTLLNKAIGLESKRKELSDHKRKFQGQSSRNTRPNNAQGSQFRSGNQGGNNYQVQRSGQQ 249

Query: 318 AQ-NQQGQNSQ---PWKKQRTGWQNHGQTRQGD-------RFIPHEVRRCYRCGDQGHIA 464
            Q N Q QN Q   P   QR+G   + Q RQG           P +   C++CG+ GH A
Sbjct: 250 GQRNNQSQNQQRSNPQTNQRSG--GNSQNRQGGTNNTQARNNAPVQPNGCFKCGELGHYA 307

Query: 465 SDC 473
           ++C
Sbjct: 308 NNC 310


>gb|AAL79340.1|AC099402_4 Putative 22 kDa kafirin cluster; Ty3-Gypsy type [Oryza sativa]
           gi|21327374|gb|AAM48279.1|AC122148_32 Putative 22 kDa
           kafirin cluster; Ty3-Gypsy type [Oryza sativa Japonica
           Group] gi|31431495|gb|AAP53268.1| retrotransposon
           protein, putative, Ty3-gypsy subclass [Oryza sativa
           Japonica Group]
          Length = 1230

 Score = 76.3 bits (186), Expect = 3e-12
 Identities = 48/160 (30%), Positives = 81/160 (50%), Gaps = 4/160 (2%)
 Frame = +3

Query: 6   EFMTLEQGSMTVTEYDIKFRQLLRFASDMYLSDERRARKFEDGLVRPLRKAVKGRQFKTY 185
           EF+ L+QG+ +V EY+I+F +L RFA +   +D  +AR+FE GL +PL++ V+  +   +
Sbjct: 166 EFLELKQGNKSVAEYEIEFSRLARFAPEFVQTDGSKARRFESGLRQPLKRRVEAFELTIF 225

Query: 186 NDVVECARTMELDH----ILHDRPNDASKTDSKKENKDKYDNYSKGFKAQNQQGQNSQPW 353
            +VV  A+ +E  +    I H +P    KT++ +       NYS     Q Q+  +    
Sbjct: 226 REVVSKAQLLEKGYHEQRIEHGQPQKKFKTNNPQNQGRFRGNYS----GQMQRKSSENQG 281

Query: 354 KKQRTGWQNHGQTRQGDRFIPHEVRRCYRCGDQGHIASDC 473
           +K      +H  +       P+   RC+ CG+ GH    C
Sbjct: 282 RKCPICQGSHVPS-----ICPNCWGRCFECGEAGHTRYQC 316


>ref|XP_003605752.1| Pol polyprotein [Medicago truncatula] gi|355506807|gb|AES87949.1|
           Pol polyprotein [Medicago truncatula]
          Length = 745

 Score = 75.5 bits (184), Expect = 6e-12
 Identities = 46/160 (28%), Positives = 79/160 (49%), Gaps = 4/160 (2%)
 Frame = +3

Query: 6   EFMTLEQGSMTVTEYDIKFRQLLRFASDMYLSDERRAR--KFEDGLVRPLRKAVKGRQFK 179
           EF+ L+QG+M+VTEY  KF +L +F       +   +R  KFE+GL   +++A+  +Q +
Sbjct: 133 EFLELKQGNMSVTEYAAKFVELSKFYPHYTAENAEFSRCIKFENGLRPDIKRAIGYQQLR 192

Query: 180 TYNDVVECARTMELDHILHDRPNDASKTDSKKENKDKYDNYSKGFKAQNQQGQNSQPWKK 359
            + D+V   R  E D   H +  +  K   ++     Y   +   K + +     +P KK
Sbjct: 193 VFQDLVNSCRIYEEDTKAHYKVVNERKGKGQQSRPKPYS--APADKGKQKMVDVRRPKKK 250

Query: 360 QRTG--WQNHGQTRQGDRFIPHEVRRCYRCGDQGHIASDC 473
                 + N G+        P E+++C RCG +GH+ +DC
Sbjct: 251 DAAEIVYFNCGEKGHKSNACPEEIKKCVRCGKKGHVVADC 290


>emb|CAN65047.1| hypothetical protein VITISV_010808 [Vitis vinifera]
          Length = 214

 Score = 74.3 bits (181), Expect = 1e-11
 Identities = 48/156 (30%), Positives = 77/156 (49%)
 Frame = +3

Query: 6   EFMTLEQGSMTVTEYDIKFRQLLRFASDMYLSDERRARKFEDGLVRPLRKAVKGRQFKTY 185
           EF+ L Q +MT+TEY IKF QL  +A ++ + ++ RA +F++GL   +R  V     +TY
Sbjct: 61  EFIHLVQRNMTLTEYAIKFTQLSEYAPNVVVDEQMRAEQFQEGLRLNIRAQVAPFMLRTY 120

Query: 186 NDVVECARTMELDHILHDRPNDASKTDSKKENKDKYDNYSKGFKAQNQQGQNSQPWKKQR 365
           ++VV  A   E +        +A +  SK         + + FK Q       QP K+++
Sbjct: 121 SEVVARALVRERE------MEEAQRLRSKNSRFGGSKKWEQDFKRQKVSHPQQQPRKQEQ 174

Query: 366 TGWQNHGQTRQGDRFIPHEVRRCYRCGDQGHIASDC 473
                + +T      +    RRCY  G+ GH+ SDC
Sbjct: 175 -----YSETTD----MTKGPRRCYESGEVGHLGSDC 201


>gb|ABI34339.1| Polyprotein, 3'-partial, putative [Solanum demissum]
          Length = 1475

 Score = 73.2 bits (178), Expect = 3e-11
 Identities = 56/186 (30%), Positives = 87/186 (46%), Gaps = 30/186 (16%)
 Frame = +3

Query: 6   EFMTLEQGSMTVTEYDIKFRQLLRFASDMYLSDERRARKFEDGLVRPLRKAVKG--RQFK 179
           +F  LEQGSM+V EY+ +F +L R A  +  ++E R R F  GL   LR   +      +
Sbjct: 235 QFCRLEQGSMSVAEYETRFHELSRHAEMILPTEEERVRCFVRGLRLQLRLETQSLVSAGR 294

Query: 180 TYNDVVECARTMELDHILHDRP--------NDASKTDSKKENKDKYDNYSKGFKAQNQQG 335
           ++ DVV+ A TME  H+  +          ++ S +DS+  ++D +D   + F+    QG
Sbjct: 295 SFLDVVDHASTME--HLRREAQGGSEKRARHEGSYSDSRPRSRDYHDRVGRRFR----QG 348

Query: 336 QNSQPWKKQ--------------------RTGWQNHGQTRQGDRFIPHEVRRCYRCGDQG 455
           Q+S+P +                      ++G   HG    G R  P +   CY CG+ G
Sbjct: 349 QSSRPTQASLQASDGGRGEASSSQGREVFQSGSSGHGSRSSGSR--PRQ--GCYECGEMG 404

Query: 456 HIASDC 473
           H A DC
Sbjct: 405 HWARDC 410