BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00019803
         (884 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AEC12444.1| ribonuclease III family protein DCL3 [Gossypium h...   368   e-100
ref|XP_002280293.2| PREDICTED: endoribonuclease Dicer homolog 3a...   363   3e-98
emb|CBI20740.3| unnamed protein product [Vitis vinifera]              363   3e-98
ref|XP_004144277.1| PREDICTED: endoribonuclease Dicer homolog 3a...   354   2e-95
ref|XP_004158269.1| PREDICTED: LOW QUALITY PROTEIN: endoribonucl...   353   2e-95

>gb|AEC12444.1| ribonuclease III family protein DCL3 [Gossypium hirsutum]
          Length = 1655

 Score =  368 bits (945), Expect = e-100
 Identities = 185/295 (62%), Positives = 232/295 (78%), Gaps = 2/295 (0%)
 Frame = -3

Query: 879  YRNSFVLCRNFLEDVLHIFEESLPHDYEHFFNMGFDHLKAITMGYISPKLYELVQIFQLL 700
            YR S +  +NFLE+V     ESLP   ++F N GFD+LKA+ +GYISPKL+EL+Q+FQ  
Sbjct: 349  YRESVLQYKNFLEEVQCRIGESLPLGDKNFLNSGFDYLKAVDLGYISPKLHELLQLFQSF 408

Query: 699  GGSRELRCLIFVERIIAAKVIERFMRKVSSLSHLTVSYLTGGGASVDALTRTMQKKTLES 520
            G +R++ CLIFVERII AKVIERF +KVS LSH  VSY+TG   SVD+L   +QK+TLES
Sbjct: 409  GETRQVLCLIFVERIITAKVIERFAKKVSCLSHFMVSYMTGSNTSVDSLAPKIQKETLES 468

Query: 519  FRCGKVNLLFTTDVSEEGIDVPSCSCVIRFDLPKTVRSYVQSRGRARQNGSRYVLMLERG 340
            FR GKVNLLFTTDV EEGI VP+C  VIRFDLPKTVRSYVQSRGRARQN S +++MLERG
Sbjct: 469  FRSGKVNLLFTTDVVEEGIHVPNCCYVIRFDLPKTVRSYVQSRGRARQNNSEFIMMLERG 528

Query: 339  NIEQRDMLYDLIRSEHSMTDSALTRDPNA--CISKVCDTEEPDMYVVRSTGASVTADSCV 166
            N++QR+ LYD+IRSE+SMT+SA+ RDP++  C+ K    EE ++++V +TGASVTADS V
Sbjct: 529  NVKQRNQLYDIIRSEYSMTNSAIKRDPDSDPCLLKDHTFEETNVFIVDATGASVTADSAV 588

Query: 165  SLIFRYCEKLPGDMYFTPKPKFQMILSGGLYECELTLPPSAPIQKLTGHQARNTH 1
            SLI +YC KLPGD Y+TPKP FQ   S GLY+C+LTLP +A +Q + G  +RN+H
Sbjct: 589  SLIHKYCGKLPGDKYYTPKPNFQFTSSEGLYKCKLTLPVNAAVQTIVGPPSRNSH 643


>ref|XP_002280293.2| PREDICTED: endoribonuclease Dicer homolog 3a-like [Vitis vinifera]
          Length = 1648

 Score =  363 bits (932), Expect = 3e-98
 Identities = 185/293 (63%), Positives = 221/293 (75%)
 Frame = -3

Query: 879  YRNSFVLCRNFLEDVLHIFEESLPHDYEHFFNMGFDHLKAITMGYISPKLYELVQIFQLL 700
            YR S   C+ FL++VL I    LPH   ++ N   D LKA+  GYI+PKL+EL+Q+FQ  
Sbjct: 350  YRQSSSQCKCFLQEVLGIIGGYLPHGDGNYLNSESDILKAVDKGYITPKLHELLQLFQSF 409

Query: 699  GGSRELRCLIFVERIIAAKVIERFMRKVSSLSHLTVSYLTGGGASVDALTRTMQKKTLES 520
            G +R++ CLIFVERII AKVIERF++K+  LSH TVSYLTG  +SVDAL    Q++TLES
Sbjct: 410  GVARKVLCLIFVERIITAKVIERFIKKIIYLSHFTVSYLTGSNSSVDALAPKAQRETLES 469

Query: 519  FRCGKVNLLFTTDVSEEGIDVPSCSCVIRFDLPKTVRSYVQSRGRARQNGSRYVLMLERG 340
            FR GKVNLLF TDV EEGI VP+CSCVIRFDLPKTVRSYVQSRGRARQ+ S++++MLERG
Sbjct: 470  FRSGKVNLLFATDVVEEGIHVPNCSCVIRFDLPKTVRSYVQSRGRARQSDSQFIIMLERG 529

Query: 339  NIEQRDMLYDLIRSEHSMTDSALTRDPNACISKVCDTEEPDMYVVRSTGASVTADSCVSL 160
            N EQRD L+D+IRSE+SMTD+A  RDP+    K    EE D Y V STGASVTADS VSL
Sbjct: 530  NTEQRDQLFDIIRSEYSMTDTATNRDPDGYTLKAYTIEEMDSYFVDSTGASVTADSSVSL 589

Query: 159  IFRYCEKLPGDMYFTPKPKFQMILSGGLYECELTLPPSAPIQKLTGHQARNTH 1
            I RYCEKLPGD YFTPKP F      G+YEC+LTLPP+A  Q + G   +N+H
Sbjct: 590  IHRYCEKLPGDKYFTPKPFFHFTYLEGMYECKLTLPPNAAFQTIIGPGNKNSH 642


>emb|CBI20740.3| unnamed protein product [Vitis vinifera]
          Length = 1688

 Score =  363 bits (932), Expect = 3e-98
 Identities = 185/293 (63%), Positives = 221/293 (75%)
 Frame = -3

Query: 879  YRNSFVLCRNFLEDVLHIFEESLPHDYEHFFNMGFDHLKAITMGYISPKLYELVQIFQLL 700
            YR S   C+ FL++VL I    LPH   ++ N   D LKA+  GYI+PKL+EL+Q+FQ  
Sbjct: 358  YRQSSSQCKCFLQEVLGIIGGYLPHGDGNYLNSESDILKAVDKGYITPKLHELLQLFQSF 417

Query: 699  GGSRELRCLIFVERIIAAKVIERFMRKVSSLSHLTVSYLTGGGASVDALTRTMQKKTLES 520
            G +R++ CLIFVERII AKVIERF++K+  LSH TVSYLTG  +SVDAL    Q++TLES
Sbjct: 418  GVARKVLCLIFVERIITAKVIERFIKKIIYLSHFTVSYLTGSNSSVDALAPKAQRETLES 477

Query: 519  FRCGKVNLLFTTDVSEEGIDVPSCSCVIRFDLPKTVRSYVQSRGRARQNGSRYVLMLERG 340
            FR GKVNLLF TDV EEGI VP+CSCVIRFDLPKTVRSYVQSRGRARQ+ S++++MLERG
Sbjct: 478  FRSGKVNLLFATDVVEEGIHVPNCSCVIRFDLPKTVRSYVQSRGRARQSDSQFIIMLERG 537

Query: 339  NIEQRDMLYDLIRSEHSMTDSALTRDPNACISKVCDTEEPDMYVVRSTGASVTADSCVSL 160
            N EQRD L+D+IRSE+SMTD+A  RDP+    K    EE D Y V STGASVTADS VSL
Sbjct: 538  NTEQRDQLFDIIRSEYSMTDTATNRDPDGYTLKAYTIEEMDSYFVDSTGASVTADSSVSL 597

Query: 159  IFRYCEKLPGDMYFTPKPKFQMILSGGLYECELTLPPSAPIQKLTGHQARNTH 1
            I RYCEKLPGD YFTPKP F      G+YEC+LTLPP+A  Q + G   +N+H
Sbjct: 598  IHRYCEKLPGDKYFTPKPFFHFTYLEGMYECKLTLPPNAAFQTIIGPGNKNSH 650


>ref|XP_004144277.1| PREDICTED: endoribonuclease Dicer homolog 3a-like [Cucumis sativus]
          Length = 1359

 Score =  354 bits (908), Expect = 2e-95
 Identities = 174/294 (59%), Positives = 230/294 (78%)
 Frame = -3

Query: 882  LYRNSFVLCRNFLEDVLHIFEESLPHDYEHFFNMGFDHLKAITMGYISPKLYELVQIFQL 703
            +YR SF+  ++FLE+ L +  ESL  + E+   +GFD  KA+ +GYISPKL+EL+Q+F+ 
Sbjct: 342  VYRESFLQYKHFLEEALLVIGESLSLENENVPTLGFDLWKAVELGYISPKLFELLQLFES 401

Query: 702  LGGSRELRCLIFVERIIAAKVIERFMRKVSSLSHLTVSYLTGGGASVDALTRTMQKKTLE 523
             G SR++ CLIFVERIIAA VIER ++KV +LSH TVSY+TG  ASV AL   +QK+TLE
Sbjct: 402  FGVSRQVLCLIFVERIIAANVIERIVKKVENLSHFTVSYVTGCNASVGALAPKVQKETLE 461

Query: 522  SFRCGKVNLLFTTDVSEEGIDVPSCSCVIRFDLPKTVRSYVQSRGRARQNGSRYVLMLER 343
             F  GK+NLLF+TDV EEG+ VP+CS V+RFDLPKTVRSYVQSRGRARQN S+Y+L+LER
Sbjct: 462  LFCHGKLNLLFSTDVVEEGLHVPNCSFVVRFDLPKTVRSYVQSRGRARQNNSQYILLLER 521

Query: 342  GNIEQRDMLYDLIRSEHSMTDSALTRDPNACISKVCDTEEPDMYVVRSTGASVTADSCVS 163
            GN++QR +L+D+IRS+ SMTD+A++RD +AC+ K     E D Y+V +TGASVTADS V 
Sbjct: 522  GNLKQRALLFDVIRSDRSMTDAAMSRDLDACVLKPFSLMETDCYIVEATGASVTADSSVG 581

Query: 162  LIFRYCEKLPGDMYFTPKPKFQMILSGGLYECELTLPPSAPIQKLTGHQARNTH 1
            L+++YC+KLPGD YF+PKP FQ+    G YEC+LTLPP+A +Q + G   RN++
Sbjct: 582  LVYQYCKKLPGDKYFSPKPIFQLSYGEGSYECQLTLPPTAALQTIVGPSTRNSN 635


>ref|XP_004158269.1| PREDICTED: LOW QUALITY PROTEIN: endoribonuclease Dicer homolog
            3a-like [Cucumis sativus]
          Length = 1639

 Score =  353 bits (907), Expect = 2e-95
 Identities = 174/294 (59%), Positives = 230/294 (78%)
 Frame = -3

Query: 882  LYRNSFVLCRNFLEDVLHIFEESLPHDYEHFFNMGFDHLKAITMGYISPKLYELVQIFQL 703
            +YR SF+  ++FLE+ L +  ESL  + E+   +GFD  KA+ +GYISPKL+EL+Q+F+ 
Sbjct: 342  VYRESFLQYKHFLEEALLVIGESLSLENENVPTLGFDLWKAVELGYISPKLFELLQLFES 401

Query: 702  LGGSRELRCLIFVERIIAAKVIERFMRKVSSLSHLTVSYLTGGGASVDALTRTMQKKTLE 523
             G SR++ CLIFVERIIAA VIER ++KV +LSH TVSY+TG  ASV AL   +QK+TLE
Sbjct: 402  FGVSRQVLCLIFVERIIAANVIERIVKKVENLSHFTVSYVTGCDASVGALAPKVQKETLE 461

Query: 522  SFRCGKVNLLFTTDVSEEGIDVPSCSCVIRFDLPKTVRSYVQSRGRARQNGSRYVLMLER 343
             F  GK+NLLF+TDV EEG+ VP+CS V+RFDLPKTVRSYVQSRGRARQN S+Y+L+LER
Sbjct: 462  LFCHGKLNLLFSTDVVEEGLHVPNCSFVVRFDLPKTVRSYVQSRGRARQNNSQYILLLER 521

Query: 342  GNIEQRDMLYDLIRSEHSMTDSALTRDPNACISKVCDTEEPDMYVVRSTGASVTADSCVS 163
            GN++QR +L+D+IRS+ SMTD+A++RD +AC+ K     E D Y+V +TGASVTADS V 
Sbjct: 522  GNLKQRALLFDVIRSDRSMTDAAMSRDLDACVLKPFSLMETDCYIVEATGASVTADSSVG 581

Query: 162  LIFRYCEKLPGDMYFTPKPKFQMILSGGLYECELTLPPSAPIQKLTGHQARNTH 1
            L+++YC+KLPGD YF+PKP FQ+    G YEC+LTLPP+A +Q + G   RN++
Sbjct: 582  LVYQYCKKLPGDKYFSPKPIFQLSYGEGSYECQLTLPPTAALQTIVGPSTRNSN 635