BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00019756
         (487 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002454941.1| hypothetical protein SORBIDRAFT_03g001780 [S...   172   3e-41
gb|ABD33126.2| RNA-directed DNA polymerase (Reverse transcriptas...   168   5e-40
emb|CCA66054.1| hypothetical protein [Beta vulgaris subsp. vulga...   166   1e-39
gb|AAG51783.1|AC079679_3 reverse transcriptase, putative; 16838-...   165   3e-39
gb|AAM18736.1|AC092548_14 putative reverse transcriptase [Oryza ...   165   4e-39

>ref|XP_002454941.1| hypothetical protein SORBIDRAFT_03g001780 [Sorghum bicolor]
           gi|241926916|gb|EES00061.1| hypothetical protein
           SORBIDRAFT_03g001780 [Sorghum bicolor]
          Length = 631

 Score =  172 bits (435), Expect = 3e-41
 Identities = 77/155 (49%), Positives = 119/155 (76%)
 Frame = -3

Query: 485 ALKMDMAKAYNRVEWSFVDNIFEKLGFNNKWRSMIQQCLSTVSFQVMLNGSPLEEIIPER 306
           A+K+DM+KAY+RVEWSF++N+  K+GF+ KW  +I +C++TV++++ +N S  ++I P+R
Sbjct: 153 AIKLDMSKAYDRVEWSFLENMMRKMGFDEKWVQLIMKCVTTVTYKIKVNDSYTQKIFPQR 212

Query: 305 GLRQGDPLSPYLFILVSEALSRMIARAEQNDEMHGIKIRRNSPALTHLLYADDLILFIRA 126
           GLRQGDPLSPYLFI+ +E LS M+ +AEQ  ++ GIKI R +P + HL +ADD ++ +RA
Sbjct: 213 GLRQGDPLSPYLFIICAEGLSAMLQKAEQKGKIEGIKICRGAPKVNHLFFADDSLILMRA 272

Query: 125 NLAESGHLKKILDDYCNASGQKLNFDKSNVFFSRN 21
             +++  L++ILD Y  ASGQ +N +KS++ FS N
Sbjct: 273 RASDALELRRILDVYEKASGQVINKEKSSMMFSPN 307


>gb|ABD33126.2| RNA-directed DNA polymerase (Reverse transcriptase) [Medicago
           truncatula]
          Length = 653

 Score =  168 bits (425), Expect = 5e-40
 Identities = 79/161 (49%), Positives = 116/161 (72%)
 Frame = -3

Query: 485 ALKMDMAKAYNRVEWSFVDNIFEKLGFNNKWRSMIQQCLSTVSFQVMLNGSPLEEIIPER 306
           ALK+D++K Y+RV+W+++ +I EK+GFN  W   ++  ++ VS+ V++N   +  I P R
Sbjct: 164 ALKIDISKTYDRVDWNYLFSIMEKMGFNPIWIKWMRMSVTMVSYHVLVNDDRVGPIYPGR 223

Query: 305 GLRQGDPLSPYLFILVSEALSRMIARAEQNDEMHGIKIRRNSPALTHLLYADDLILFIRA 126
           GLRQGDPLSPYLFIL +E +S +I +AE+N+ +HG+K+ + +P ++HLL+ADD  LF RA
Sbjct: 224 GLRQGDPLSPYLFILCAEGMSTLIKQAERNNILHGVKVCKRAPTVSHLLFADDSFLFFRA 283

Query: 125 NLAESGHLKKILDDYCNASGQKLNFDKSNVFFSRNVKYRQK 3
           N  E+  LK ILD Y NAS Q +N  KS ++FSRNV   +K
Sbjct: 284 NENETRALKDILDTYANASDQLINMQKSEIYFSRNVPVTKK 324


>emb|CCA66054.1| hypothetical protein [Beta vulgaris subsp. vulgaris]
          Length = 1355

 Score =  166 bits (421), Expect = 1e-39
 Identities = 77/161 (47%), Positives = 115/161 (71%)
 Frame = -3

Query: 485  ALKMDMAKAYNRVEWSFVDNIFEKLGFNNKWRSMIQQCLSTVSFQVMLNGSPLEEIIPER 306
            A+K+DM+KAY+RVEW F+  +   +GF+ +W ++I + +S+V++  ++NGS    ++P R
Sbjct: 576  AMKLDMSKAYDRVEWGFLRKLLLTMGFDGRWVNLIMEFVSSVTYSFIINGSVCGSVVPAR 635

Query: 305  GLRQGDPLSPYLFILVSEALSRMIARAEQNDEMHGIKIRRNSPALTHLLYADDLILFIRA 126
            GLRQGDPLSPYLFI+V++A S+MI R  Q+ ++HG K  R+ P ++HL +ADD +LF RA
Sbjct: 636  GLRQGDPLSPYLFIMVADAFSKMIQRKVQDKQLHGAKASRSGPEISHLFFADDSLLFTRA 695

Query: 125  NLAESGHLKKILDDYCNASGQKLNFDKSNVFFSRNVKYRQK 3
            N  E   +  IL+ Y  ASGQK+N++KS V +SR V   QK
Sbjct: 696  NRQECTIIVDILNQYELASGQKINYEKSEVSYSRGVSVSQK 736


>gb|AAG51783.1|AC079679_3 reverse transcriptase, putative; 16838-20266 [Arabidopsis thaliana]
          Length = 1142

 Score =  165 bits (418), Expect = 3e-39
 Identities = 78/157 (49%), Positives = 113/157 (71%)
 Frame = -3

Query: 485 ALKMDMAKAYNRVEWSFVDNIFEKLGFNNKWRSMIQQCLSTVSFQVMLNGSPLEEIIPER 306
           A+K DM+KAY++VEW+F++ +  K+GF  KW S I  C++TV ++V++NG P   IIPER
Sbjct: 356 AIKTDMSKAYDQVEWNFIEALLRKMGFCEKWISWIMWCITTVQYKVLINGQPKGLIIPER 415

Query: 305 GLRQGDPLSPYLFILVSEALSRMIARAEQNDEMHGIKIRRNSPALTHLLYADDLILFIRA 126
           GLRQGDPLSPYLFIL +E L   I +AE+ + + GIK+   SPA++HLL+ADD + F +A
Sbjct: 416 GLRQGDPLSPYLFILCTEVLIANIRKAERQNLITGIKVATPSPAVSHLLFADDSLFFCKA 475

Query: 125 NLAESGHLKKILDDYCNASGQKLNFDKSNVFFSRNVK 15
           N  + G + +IL  Y + SGQ++NF KS++ F   V+
Sbjct: 476 NKEQCGIILEILKQYESVSGQQINFSKSSIQFGHKVE 512


>gb|AAM18736.1|AC092548_14 putative reverse transcriptase [Oryza sativa Japonica Group]
          Length = 1509

 Score =  165 bits (417), Expect = 4e-39
 Identities = 77/161 (47%), Positives = 114/161 (70%)
 Frame = -3

Query: 485  ALKMDMAKAYNRVEWSFVDNIFEKLGFNNKWRSMIQQCLSTVSFQVMLNGSPLEEIIPER 306
            A K+DM+KAY+RVEWSF+ ++  KLGF+  W ++I +C+STV++++ +NG   E   PER
Sbjct: 773  AFKLDMSKAYDRVEWSFLHDMMLKLGFHTDWVNLIMKCVSTVTYRIRVNGELSESFSPER 832

Query: 305  GLRQGDPLSPYLFILVSEALSRMIARAEQNDEMHGIKIRRNSPALTHLLYADDLILFIRA 126
            GLRQGDPLSPYLF+L +E  S ++++ E+   +HGI+I + +P+++HLL+ADD ++  RA
Sbjct: 833  GLRQGDPLSPYLFLLCAEGFSALLSKTEEEGRLHGIRICQGAPSVSHLLFADDSLILCRA 892

Query: 125  NLAESGHLKKILDDYCNASGQKLNFDKSNVFFSRNVKYRQK 3
            N  E+  L+ IL  Y   SGQ +N DKS V FS N    +K
Sbjct: 893  NGGEAQQLQTILQIYEECSGQVINKDKSAVMFSPNTSSLEK 933