BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00019666
         (733 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CAN83935.1| hypothetical protein VITISV_035769 [Vitis vinifera]   322   5e-86
ref|XP_004141982.1| PREDICTED: pentatricopeptide repeat-containi...   319   3e-85
ref|XP_002310894.1| predicted protein [Populus trichocarpa] gi|2...   313   3e-83
ref|XP_003550974.1| PREDICTED: pentatricopeptide repeat-containi...   308   6e-82
ref|XP_003608531.1| Pentatricopeptide repeat-containing protein ...   300   2e-79

>emb|CAN83935.1| hypothetical protein VITISV_035769 [Vitis vinifera]
          Length = 490

 Score =  322 bits (825), Expect = 5e-86
 Identities = 162/247 (65%), Positives = 198/247 (80%), Gaps = 4/247 (1%)
 Frame = +2

Query: 2   LSEILAKRNK-HWLLDEDIEAGEWMDSGEGRKLSK-KREVGEAETIQFLVKRLSGTDLSM 175
           LSEIL KR +  WLLD+D+E  +     E R  S  +R  G+A+ I+FLV RL+  D+++
Sbjct: 118 LSEILEKRGEVRWLLDDDVEVEQGSSGNERRGWSPARRRGGDADAIRFLVDRLTAADITI 177

Query: 176 RDWKFSKMMQQSGLPFTERQLLSIVEGLGAVGCWKHALSVVEWVYNLEEF--KHHKSRFV 349
           RDWKFS++M+QSGL FTERQLL IVE LGA G WKHALSVVEWVY  ++   + +KSRFV
Sbjct: 178 RDWKFSRVMKQSGLQFTERQLLRIVEELGARGHWKHALSVVEWVYTDKDKDNRRYKSRFV 237

Query: 350 YTKLLAVLGKARKHAEALQIFNLMREDCRIYPDMPAYHSISVTLGQAGLVKELTDVIECM 529
           YTKLLAVLGKA++  EAL IFNLMR DC IYPDM AYHS++VTLGQAGL+KEL ++IECM
Sbjct: 238 YTKLLAVLGKAKRPHEALDIFNLMRGDCHIYPDMAAYHSVAVTLGQAGLLKELLNIIECM 297

Query: 530 RQKPSKRIRNTRSKDWDPCLEPDVVVYNAVLNACVPSRQWKGVSWVMEQMRKSGLQPNGA 709
           RQKP KRI+N   K+W+  LEPDVV++NAVLNACVP++QWKGVSWV +Q+RK  L+PNGA
Sbjct: 298 RQKPPKRIKNMCRKNWNALLEPDVVIFNAVLNACVPTQQWKGVSWVFKQLRKCSLKPNGA 357

Query: 710 TYGLAME 730
           TYGLAME
Sbjct: 358 TYGLAME 364


>ref|XP_004141982.1| PREDICTED: pentatricopeptide repeat-containing protein At5g67570,
           chloroplastic-like [Cucumis sativus]
           gi|449499902|ref|XP_004160949.1| PREDICTED:
           pentatricopeptide repeat-containing protein At5g67570,
           chloroplastic-like [Cucumis sativus]
          Length = 860

 Score =  319 bits (818), Expect = 3e-85
 Identities = 158/245 (64%), Positives = 187/245 (76%), Gaps = 1/245 (0%)
 Frame = +2

Query: 2   LSEILAKRNKHWLLDEDIEAGE-WMDSGEGRKLSKKREVGEAETIQFLVKRLSGTDLSMR 178
           L E        W LD+D+E  E W++S   R    KR  G+ E I+FLV RLS   +SMR
Sbjct: 143 LFETRKLEESQWALDDDVELKEEWLESENDRYDVVKRRRGDGEVIRFLVDRLSSGPISMR 202

Query: 179 DWKFSKMMQQSGLPFTERQLLSIVEGLGAVGCWKHALSVVEWVYNLEEFKHHKSRFVYTK 358
           DWKFS+MM +SGL F E QLL I++ LGA GCWK ALSVVEWVYNL+   H KSRFVYTK
Sbjct: 203 DWKFSRMMIRSGLQFNEGQLLKILDALGAKGCWKQALSVVEWVYNLKSHSHSKSRFVYTK 262

Query: 359 LLAVLGKARKHAEALQIFNLMREDCRIYPDMPAYHSISVTLGQAGLVKELTDVIECMRQK 538
           LLAVLG ARK  EALQIFNLMR D +IYPDM AYHSI+VTLGQAGL+K+L  VIE MRQ+
Sbjct: 263 LLAVLGMARKPQEALQIFNLMRGDGQIYPDMAAYHSIAVTLGQAGLLKQLLKVIEFMRQQ 322

Query: 539 PSKRIRNTRSKDWDPCLEPDVVVYNAVLNACVPSRQWKGVSWVMEQMRKSGLQPNGATYG 718
           PSK++RN   K WDP +EPD+V+YNA+LNAC+P+ +WKGV WV  Q+RKSGL+PNGATYG
Sbjct: 323 PSKKVRNKCRKSWDPAVEPDLVIYNAILNACIPTLEWKGVYWVFTQLRKSGLRPNGATYG 382

Query: 719 LAMEV 733
           L+MEV
Sbjct: 383 LSMEV 387


>ref|XP_002310894.1| predicted protein [Populus trichocarpa] gi|222853797|gb|EEE91344.1|
           predicted protein [Populus trichocarpa]
          Length = 504

 Score =  313 bits (801), Expect = 3e-83
 Identities = 157/239 (65%), Positives = 188/239 (78%), Gaps = 3/239 (1%)
 Frame = +2

Query: 26  NKHWLLDEDI--EAGEWMDSGEGRKLSK-KREVGEAETIQFLVKRLSGTDLSMRDWKFSK 196
           N  W+ D+DI  E  +W+ SG   K    KR  GE E I+FLV RLS  ++S++DWK +K
Sbjct: 44  NLKWVFDDDIDVEDSDWLRSGSEEKWDPAKRWRGEGEAIRFLVDRLSCREVSVKDWKLAK 103

Query: 197 MMQQSGLPFTERQLLSIVEGLGAVGCWKHALSVVEWVYNLEEFKHHKSRFVYTKLLAVLG 376
           +M+QSGL F+E QLL IVE LG  G W  A++VVEWVYN +E +  KSRFVYTKLL+VLG
Sbjct: 104 IMKQSGLRFSEGQLLKIVEELGNKGKWSQAMAVVEWVYNDKERRDCKSRFVYTKLLSVLG 163

Query: 377 KARKHAEALQIFNLMREDCRIYPDMPAYHSISVTLGQAGLVKELTDVIECMRQKPSKRIR 556
           K R+  EAL IFNLMRED RIYPDM AYHSI+VTLGQ GL+KEL  VIECMRQKPSKRI 
Sbjct: 164 KERRAQEALSIFNLMREDRRIYPDMAAYHSIAVTLGQTGLLKELVKVIECMRQKPSKRIN 223

Query: 557 NTRSKDWDPCLEPDVVVYNAVLNACVPSRQWKGVSWVMEQMRKSGLQPNGATYGLAMEV 733
              +K+WDP LEPD+V+YNA+LNACVPS+QWKGVSWV +Q+R+SGL+PNGATYGLAMEV
Sbjct: 224 KMLNKNWDPVLEPDLVIYNAILNACVPSQQWKGVSWVFQQLRRSGLKPNGATYGLAMEV 282


>ref|XP_003550974.1| PREDICTED: pentatricopeptide repeat-containing protein At5g67570,
           chloroplastic-like [Glycine max]
          Length = 865

 Score =  308 bits (790), Expect = 6e-82
 Identities = 151/234 (64%), Positives = 185/234 (79%), Gaps = 1/234 (0%)
 Frame = +2

Query: 35  WLLDEDIEAGE-WMDSGEGRKLSKKREVGEAETIQFLVKRLSGTDLSMRDWKFSKMMQQS 211
           W+ D D+E  E W D G G +  K ++  E E I+FLV RLS  +++M+DWKFS+MM+ S
Sbjct: 139 WVFDADLEIDEVWFDEGYGAR-GKTQKRSEVEVIRFLVHRLSDKEITMKDWKFSRMMKMS 197

Query: 212 GLPFTERQLLSIVEGLGAVGCWKHALSVVEWVYNLEEFKHHKSRFVYTKLLAVLGKARKH 391
           GLPFTE QLL IVE LG   CWK ALSVV+WVYN ++ +  +SRFVYTKLL+VLGKA + 
Sbjct: 198 GLPFTEGQLLRIVELLGFKRCWKQALSVVQWVYNYKDHRKFQSRFVYTKLLSVLGKAGRP 257

Query: 392 AEALQIFNLMREDCRIYPDMPAYHSISVTLGQAGLVKELTDVIECMRQKPSKRIRNTRSK 571
            EALQIFN+MRE   IYPD+ AYHS++VTLGQAGL+KEL +++ECMRQKP   +     K
Sbjct: 258 NEALQIFNMMRESIHIYPDIAAYHSVAVTLGQAGLLKELLNIVECMRQKPKAFMHR---K 314

Query: 572 DWDPCLEPDVVVYNAVLNACVPSRQWKGVSWVMEQMRKSGLQPNGATYGLAMEV 733
           +WDP LEPDVV+YNAVLNACVPS+QWKGVSWV +Q+RKSGL+PNGATYGLAMEV
Sbjct: 315 NWDPVLEPDVVIYNAVLNACVPSKQWKGVSWVFKQLRKSGLKPNGATYGLAMEV 368


>ref|XP_003608531.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
           gi|355509586|gb|AES90728.1| Pentatricopeptide
           repeat-containing protein [Medicago truncatula]
          Length = 877

 Score =  300 bits (769), Expect = 2e-79
 Identities = 144/234 (61%), Positives = 181/234 (77%), Gaps = 1/234 (0%)
 Frame = +2

Query: 35  WLLDEDIEAGE-WMDSGEGRKLSKKREVGEAETIQFLVKRLSGTDLSMRDWKFSKMMQQS 211
           W+ ++DIE  E W D     K  K  +  E + ++FLV RL   ++  +DWKFS++M+ S
Sbjct: 158 WVFEDDIEINEVWFDENNNGKRKKTSKRSEVQVVRFLVDRLCDKEIRAKDWKFSRLMKLS 217

Query: 212 GLPFTERQLLSIVEGLGAVGCWKHALSVVEWVYNLEEFKHHKSRFVYTKLLAVLGKARKH 391
           GL FTE QL+ I+E LG   CWK ALSVV+WVYN ++ +  +SRFVYTKLLAVLGKAR+ 
Sbjct: 218 GLSFTEGQLMMIIEMLGVKRCWKQALSVVQWVYNSKDHRKFQSRFVYTKLLAVLGKARRP 277

Query: 392 AEALQIFNLMREDCRIYPDMPAYHSISVTLGQAGLVKELTDVIECMRQKPSKRIRNTRSK 571
            EALQIFN+M  + R+YPDM AYHSI+VTLGQAGL+KEL +++ECMRQKP + ++    K
Sbjct: 278 KEALQIFNMMLGNIRVYPDMAAYHSIAVTLGQAGLLKELLNIVECMRQKP-ETLKYMYRK 336

Query: 572 DWDPCLEPDVVVYNAVLNACVPSRQWKGVSWVMEQMRKSGLQPNGATYGLAMEV 733
           +WDP LEPDVV+YNAVLNACVPS+QWKGVSWV +QMRKS L+PNGATYGLAMEV
Sbjct: 337 NWDPTLEPDVVIYNAVLNACVPSKQWKGVSWVFQQMRKSSLKPNGATYGLAMEV 390