BLASTX nr result

ID: Coptis23_contig00019641 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00019641
         (561 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002525296.1| conserved hypothetical protein [Ricinus comm...    79   5e-13
ref|XP_002310889.1| predicted protein [Populus trichocarpa] gi|2...    75   9e-12
emb|CAN77738.1| hypothetical protein VITISV_020689 [Vitis vinifera]    70   3e-10
ref|XP_003517357.1| PREDICTED: uncharacterized protein LOC100780...    55   1e-05

>ref|XP_002525296.1| conserved hypothetical protein [Ricinus communis]
           gi|223535454|gb|EEF37124.1| conserved hypothetical
           protein [Ricinus communis]
          Length = 199

 Score = 79.0 bits (193), Expect = 5e-13
 Identities = 55/144 (38%), Positives = 76/144 (52%), Gaps = 27/144 (18%)
 Frame = +2

Query: 5   PVTPPQPKVYRVLSSDFRRIVQKLTGAPE-------FQTQHLQIVAPPPLNT-VMPQIMS 160
           P+ P  P+VY+V   +FR +VQKLTGAP+        Q Q LQ VAPPPL+    P + S
Sbjct: 56  PLPPTPPRVYKVDPINFRDLVQKLTGAPDPSESQGNNQQQRLQRVAPPPLDLDKKPALFS 115

Query: 161 NYNATDPQQPLQ--PQGI-VSMGAQNEELR-------EPRAITS---------FEMFSPS 283
              AT    PL+  P  +     A  +EL        +PR ++          F + SPS
Sbjct: 116 REFATVSAAPLELLPSPVNTPFSALYQELMSDTLPDSKPRKVSDSVMASSCLEFNLLSPS 175

Query: 284 WHSWCSLPILSPGTQALMEPSSVI 355
            H+WCS P+LSPGT + +E S+V+
Sbjct: 176 THNWCSFPLLSPGTLSSLEQSTVL 199


>ref|XP_002310889.1| predicted protein [Populus trichocarpa] gi|222853792|gb|EEE91339.1|
           predicted protein [Populus trichocarpa]
          Length = 193

 Score = 74.7 bits (182), Expect = 9e-12
 Identities = 51/139 (36%), Positives = 71/139 (51%), Gaps = 22/139 (15%)
 Frame = +2

Query: 5   PVTPPQPKVYRVLSSDFRRIVQKLTGAPE----FQTQH---LQIVAPPPLNTVMPQIMSN 163
           P+ P  P+VY+V   +FR +VQKLTGAPE     + QH   LQ VAPPPL+   P +   
Sbjct: 55  PLPPTPPRVYKVDPINFRDLVQKLTGAPEPEPVPEPQHQPRLQSVAPPPLDLAKPTLYGR 114

Query: 164 YNATDPQQPLQPQGIVSMGAQNEELR------EPRAITSFEM---------FSPSWHSWC 298
             +  P Q L       + A  +EL       +P+ I+   M          SPS  +WC
Sbjct: 115 DFSAVPLQLLPSPAKTPLSALYQELMSESLDVKPKKISDSLMAVSSSLELNLSPSSRAWC 174

Query: 299 SLPILSPGTQALMEPSSVI 355
           S P+LSPGT + +E  +V+
Sbjct: 175 SFPLLSPGTLSSLEQGTVL 193


>emb|CAN77738.1| hypothetical protein VITISV_020689 [Vitis vinifera]
          Length = 222

 Score = 69.7 bits (169), Expect = 3e-10
 Identities = 46/124 (37%), Positives = 67/124 (54%), Gaps = 11/124 (8%)
 Frame = +2

Query: 17  PQPKVYRVLSSDFRRIVQKLTGAPEFQTQHLQIVAPPPLN-TVMPQIMSNYNATDP---- 181
           P PKVYRV S++FR++VQ+LTGAP+ ++Q L+ +APPPL   V   + S+ N T P    
Sbjct: 101 PPPKVYRVNSTNFRKVVQRLTGAPKLKSQRLKSMAPPPLPLPVXSFLQSDDNITQPILLS 160

Query: 182 ------QQPLQPQGIVSMGAQNEELREPRAITSFEMFSPSWHSWCSLPILSPGTQALMEP 343
                   P    G +  G   ++     A TS ++ S    +W S P LSPGT   +E 
Sbjct: 161 GCPKGAATPTTTYGHLLPGMFCDD--SLMANTSLQICSSPSSAWPSFPFLSPGTLFALEQ 218

Query: 344 SSVI 355
            +V+
Sbjct: 219 GTVL 222


>ref|XP_003517357.1| PREDICTED: uncharacterized protein LOC100780361 [Glycine max]
          Length = 154

 Score = 54.7 bits (130), Expect = 1e-05
 Identities = 43/131 (32%), Positives = 65/131 (49%), Gaps = 14/131 (10%)
 Frame = +2

Query: 5   PVTPPQP---KVYRVLSSDFRRIVQKLTGAPEFQT-----QHLQIVAPPPL------NTV 142
           PV PP P   +VY+V + +FR +VQ+LTGAPEF+      Q  Q VA  P+      NT 
Sbjct: 32  PVAPPAPTPIRVYKVDAINFRDLVQQLTGAPEFKPDQEHHQLFQSVAVAPIAATSLVNTP 91

Query: 143 MPQIMSNYNATDPQQPLQPQGIVSMGAQNEELREPRAITSFEMFSPSWHSWCSLPILSPG 322
             Q++S+ +       + P      GAQ+E L          + SPS+++W S+  +S G
Sbjct: 92  PKQMLSSKDNIAASSTM-PSTNWHQGAQSEAL-------ELNLSSPSYNNWFSVSRMSQG 143

Query: 323 TQALMEPSSVI 355
               +E   V+
Sbjct: 144 NMTSLETGRVL 154


Top