BLASTX nr result

ID: Coptis23_contig00019528 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00019528
         (330 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002328493.1| predicted protein [Populus trichocarpa] gi|2...   152   3e-35
ref|XP_002319077.1| predicted protein [Populus trichocarpa] gi|1...   152   3e-35
gb|AFK82275.1| PR-4 protein [Chimonanthus praecox]                    149   3e-34
ref|XP_002884463.1| PR4-type protein [Arabidopsis lyrata subsp. ...   148   4e-34
ref|XP_002884462.1| PR4-type protein [Arabidopsis lyrata subsp. ...   147   7e-34

>ref|XP_002328493.1| predicted protein [Populus trichocarpa] gi|222838208|gb|EEE76573.1|
           predicted protein [Populus trichocarpa]
          Length = 195

 Score =  152 bits (384), Expect = 3e-35
 Identities = 69/78 (88%), Positives = 73/78 (93%)
 Frame = +2

Query: 2   QYGWTAFCGPAGPRGQASCGRCLRVTNTYTGSQITVRIVDQCSNGGLDLEEGVFRQLDTN 181
           QYGWTAFCGP GPRGQASCGRCLRVTNT TG+Q T+RIVDQCSNGGLDL+ GVFRQLDT+
Sbjct: 118 QYGWTAFCGPVGPRGQASCGRCLRVTNTGTGAQATMRIVDQCSNGGLDLDAGVFRQLDTD 177

Query: 182 GRGIAQGHLIVNYQFVNC 235
           GRG AQGHLIVNYQFVNC
Sbjct: 178 GRGNAQGHLIVNYQFVNC 195


>ref|XP_002319077.1| predicted protein [Populus trichocarpa] gi|118487978|gb|ABK95810.1|
           unknown [Populus trichocarpa]
           gi|222857453|gb|EEE95000.1| predicted protein [Populus
           trichocarpa]
          Length = 196

 Score =  152 bits (384), Expect = 3e-35
 Identities = 68/80 (85%), Positives = 75/80 (93%)
 Frame = +2

Query: 2   QYGWTAFCGPAGPRGQASCGRCLRVTNTYTGSQITVRIVDQCSNGGLDLEEGVFRQLDTN 181
           +YGWTAFCGP GPRGQASCG+CLRVTNT TG+Q+TVRIVDQCSNGGLDL+ GVFRQ+DT+
Sbjct: 117 KYGWTAFCGPVGPRGQASCGKCLRVTNTGTGAQVTVRIVDQCSNGGLDLDAGVFRQIDTD 176

Query: 182 GRGIAQGHLIVNYQFVNC*D 241
           GRG AQGHLIVNYQFVNC D
Sbjct: 177 GRGNAQGHLIVNYQFVNCGD 196


>gb|AFK82275.1| PR-4 protein [Chimonanthus praecox]
          Length = 142

 Score =  149 bits (375), Expect = 3e-34
 Identities = 69/80 (86%), Positives = 72/80 (90%)
 Frame = +2

Query: 2   QYGWTAFCGPAGPRGQASCGRCLRVTNTYTGSQITVRIVDQCSNGGLDLEEGVFRQLDTN 181
           +YGWTAFCG  GPRGQASCG+CLRVTNT TGSQ TVRIVDQCSNGGLDLEEGVFRQLDTN
Sbjct: 63  KYGWTAFCGLVGPRGQASCGKCLRVTNTGTGSQATVRIVDQCSNGGLDLEEGVFRQLDTN 122

Query: 182 GRGIAQGHLIVNYQFVNC*D 241
           G GI QGHLIVNY FV+C D
Sbjct: 123 GAGIQQGHLIVNYDFVDCGD 142


>ref|XP_002884463.1| PR4-type protein [Arabidopsis lyrata subsp. lyrata]
           gi|297330303|gb|EFH60722.1| PR4-type protein
           [Arabidopsis lyrata subsp. lyrata]
          Length = 141

 Score =  148 bits (374), Expect = 4e-34
 Identities = 66/78 (84%), Positives = 73/78 (93%)
 Frame = +2

Query: 2   QYGWTAFCGPAGPRGQASCGRCLRVTNTYTGSQITVRIVDQCSNGGLDLEEGVFRQLDTN 181
           +YGWTAFCGP GPRG+ SCGRCLRVTNT TG+Q TVRIVDQCSNGGLDL+EGVFRQLDTN
Sbjct: 64  RYGWTAFCGPVGPRGRDSCGRCLRVTNTATGTQATVRIVDQCSNGGLDLDEGVFRQLDTN 123

Query: 182 GRGIAQGHLIVNYQFVNC 235
           G+G A+GHLIVNY+FVNC
Sbjct: 124 GQGNARGHLIVNYEFVNC 141


>ref|XP_002884462.1| PR4-type protein [Arabidopsis lyrata subsp. lyrata]
           gi|297330302|gb|EFH60721.1| PR4-type protein
           [Arabidopsis lyrata subsp. lyrata]
          Length = 141

 Score =  147 bits (372), Expect = 7e-34
 Identities = 64/78 (82%), Positives = 73/78 (93%)
 Frame = +2

Query: 2   QYGWTAFCGPAGPRGQASCGRCLRVTNTYTGSQITVRIVDQCSNGGLDLEEGVFRQLDTN 181
           +YGWTAFCGP GPRG+ SCGRCLRVTNT TG+Q TVRI+DQCSNGGLDL++GVFRQLDTN
Sbjct: 64  KYGWTAFCGPTGPRGRDSCGRCLRVTNTATGTQATVRIIDQCSNGGLDLDDGVFRQLDTN 123

Query: 182 GRGIAQGHLIVNYQFVNC 235
           G+G A+GHLIVNY+FVNC
Sbjct: 124 GQGYARGHLIVNYEFVNC 141


Top