BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00019524
         (689 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|ABE87589.2| RNA-directed DNA polymerase (Reverse transcriptas...   120   3e-43
gb|ABN09154.1| RNA-directed DNA polymerase (Reverse transcriptas...   127   2e-42
gb|ABD28670.2| RNA-directed DNA polymerase (Reverse transcriptas...   118   2e-41
gb|EEE66599.1| hypothetical protein OsJ_23164 [Oryza sativa Japo...    96   2e-32
gb|ABA98491.1| retrotransposon protein, putative, unclassified [...    93   6e-32

>gb|ABE87589.2| RNA-directed DNA polymerase (Reverse transcriptase); Ribonuclease
           H; Endonuclease/exonuclease/phosphatase [Medicago
           truncatula]
          Length = 1246

 Score =  120 bits (302), Expect(2) = 3e-43
 Identities = 60/133 (45%), Positives = 93/133 (69%)
 Frame = +1

Query: 1   ASFITLIPKEKHPSKVTHYKPICMSNFLVKIISKIMQLRLNPMIVSLVSKEQAWFIQGRC 180
           ++ I LIPK      +  Y+PI ++NF  KIISKI+  RL  + + ++S EQ  FI+ R 
Sbjct: 500 SNLIVLIPKVPGARVMGDYRPIALANFQFKIISKILADRLADITMRIISVEQRGFIRDRD 559

Query: 181 IQSNIGLASEMTNELKKKRHGGNMILKIEITQAYDTLSWVFLKQVLKQFGFAEKWINWIF 360
           I   + LASE  N L+K+++GGN+ LK++I +A+DTL W FL  VL++FGF EK+++WI 
Sbjct: 560 ISKCVILASEAINLLEKRQYGGNVALKVDIAKAFDTLDWNFLLAVLQRFGFDEKFVHWIL 619

Query: 361 VLLETSMLSILIN 399
           V+L+++ LS+L+N
Sbjct: 620 VILQSARLSVLVN 632



 Score = 80.9 bits (198), Expect(2) = 3e-43
 Identities = 42/97 (43%), Positives = 57/97 (58%)
 Frame = +2

Query: 395 LTGVHVVFFSVGRGLKQGDPISPLLFALAEDVLSGGTNFLRDRGLTKPMVRVRGHPGPSH 574
           + G  V FF+   G++QGDP+SPLLF L E+VLS   +     G   PM   RG   P+H
Sbjct: 631 VNGKAVGFFTCSHGVRQGDPLSPLLFCLVEEVLSRALSMAATDGQLIPMSYCRGVSFPTH 690

Query: 575 LLFADDVLICTKGDLKGLRHLQVLLSRYEAASGQALN 685
           +L+ADDVLI   G  + +R L  + S+Y   SGQ +N
Sbjct: 691 ILYADDVLIFCTGTKRNIRRLIKIFSQYSEVSGQLIN 727


>gb|ABN09154.1| RNA-directed DNA polymerase (Reverse transcriptase) [Medicago
           truncatula]
          Length = 528

 Score =  127 bits (319), Expect(2) = 2e-42
 Identities = 64/133 (48%), Positives = 95/133 (71%)
 Frame = +1

Query: 1   ASFITLIPKEKHPSKVTHYKPICMSNFLVKIISKIMQLRLNPMIVSLVSKEQAWFIQGRC 180
           A+ + LIPK ++   +  ++PI M+NF  KIISKI+  RL  ++ ++VS+EQ  FIQGR 
Sbjct: 174 ANTLILIPKTQNADSMDQFRPIAMANFKFKIISKILADRLAQIMPNIVSQEQRGFIQGRN 233

Query: 181 IQSNIGLASEMTNELKKKRHGGNMILKIEITQAYDTLSWVFLKQVLKQFGFAEKWINWIF 360
           I+  + LASE  N L +K  GGN+  K++I++A+DTL+W FL +VLKQFGF+E + NWI 
Sbjct: 234 IKDCVCLASEAINMLDQKSFGGNLAFKVDISKAFDTLNWKFLLKVLKQFGFSETFCNWID 293

Query: 361 VLLETSMLSILIN 399
            +L+++ LSI IN
Sbjct: 294 AILQSAKLSICIN 306



 Score = 71.2 bits (173), Expect(2) = 2e-42
 Identities = 37/84 (44%), Positives = 51/84 (60%)
 Frame = +2

Query: 395 LTGVHVVFFSVGRGLKQGDPISPLLFALAEDVLSGGTNFLRDRGLTKPMVRVRGHPGPSH 574
           + G    +FS  RG++QGDP+SPLLF LAEDVLS     L ++G  K M   R    PSH
Sbjct: 305 INGSQQGYFSCSRGVRQGDPLSPLLFCLAEDVLSRSLTKLVEQGKLKQMRGTRNCLVPSH 364

Query: 575 LLFADDVLICTKGDLKGLRHLQVL 646
           +L+ADD++I   G +   R  Q++
Sbjct: 365 ILYADDIMIFCNGGISDARLQQLI 388


>gb|ABD28670.2| RNA-directed DNA polymerase (Reverse transcriptase) [Medicago
           truncatula]
          Length = 642

 Score =  118 bits (296), Expect(2) = 2e-41
 Identities = 62/133 (46%), Positives = 86/133 (64%)
 Frame = +1

Query: 1   ASFITLIPKEKHPSKVTHYKPICMSNFLVKIISKIMQLRLNPMIVSLVSKEQAWFIQGRC 180
           A+ I LIPK  +   V  Y+ I + NF  KII+K++  RL  ++ S++SKEQ  F+QGR 
Sbjct: 235 ANSIILIPKTPNADSVDQYRTIALVNFKFKIINKVLADRLAKILPSIISKEQRGFVQGRN 294

Query: 181 IQSNIGLASEMTNELKKKRHGGNMILKIEITQAYDTLSWVFLKQVLKQFGFAEKWINWIF 360
           I+  I L SE  N L  K  GGN+ LKI++T+A+DTL+W FL  VLK FGF E + NWI 
Sbjct: 295 IRDCIALTSEAINVLDNKSFGGNLALKIDVTKAFDTLNWDFLLLVLKTFGFNELFCNWIK 354

Query: 361 VLLETSMLSILIN 399
            +L +S + I +N
Sbjct: 355 TILHSSKMFISMN 367



 Score = 77.0 bits (188), Expect(2) = 2e-41
 Identities = 38/98 (38%), Positives = 57/98 (58%)
 Frame = +2

Query: 392 SLTGVHVVFFSVGRGLKQGDPISPLLFALAEDVLSGGTNFLRDRGLTKPMVRVRGHPGPS 571
           S+ G    FF+  RG++QGDP+SPLLF + E+VLS   + L D+GL   +   R +  P 
Sbjct: 365 SMNGAQHGFFNCNRGVRQGDPLSPLLFCIVEEVLSRSISILADKGLIDLIAASRNNCLPF 424

Query: 572 HLLFADDVLICTKGDLKGLRHLQVLLSRYEAASGQALN 685
           H  + DD+++  K  +  L  L+ L +RY   SGQ +N
Sbjct: 425 HCFYVDDLMVFCKAKMSSLIVLKSLFTRYADCSGQIMN 462


>gb|EEE66599.1| hypothetical protein OsJ_23164 [Oryza sativa Japonica Group]
          Length = 813

 Score = 96.3 bits (238), Expect(2) = 2e-32
 Identities = 48/132 (36%), Positives = 78/132 (59%), Gaps = 2/132 (1%)
 Frame = +1

Query: 10  ITLIPKEKHPSKVTHYKPICMSNFLVKIISKIMQLRLNPMIVSLVSKEQAWFIQGRCIQS 189
           I LIPK   P ++  ++PI + N + KI+SK +  RL P++  LVS+ Q+ F+ GR I  
Sbjct: 563 IVLIPKVDQPMELKDFRPISLCNVIYKIVSKCLVNRLRPILDELVSQNQSAFVPGRMITD 622

Query: 190 NIGLASEMTNELKKKRHGGN--MILKIEITQAYDTLSWVFLKQVLKQFGFAEKWINWIFV 363
           N  LA E  + +++ ++        K+++++AYD + WVFL+Q + + GFA +WI WI  
Sbjct: 623 NALLAFECFHFIQRNKNANKAACAYKLDLSKAYDRVDWVFLEQTMCKLGFAPRWIKWIMT 682

Query: 364 LLETSMLSILIN 399
            L +   SI  N
Sbjct: 683 CLSSVRYSIKFN 694



 Score = 68.9 bits (167), Expect(2) = 2e-32
 Identities = 40/104 (38%), Positives = 56/104 (53%), Gaps = 3/104 (2%)
 Frame = +2

Query: 383 YPFSLTGVHVVFFSVGRGLKQGDPISPLLFALAEDVLSGGTNFLRDR---GLTKPMVRVR 553
           Y     G  +  F+  RGL+QGDP+SP LF    D   G +  + +R   G   P+   R
Sbjct: 689 YSIKFNGTLLDTFAPSRGLRQGDPLSPFLFLFVAD---GFSRLMEERVAAGDITPVKICR 745

Query: 554 GHPGPSHLLFADDVLICTKGDLKGLRHLQVLLSRYEAASGQALN 685
           G PG SHLLFADD L+  K D +  R ++ +L+ Y   +GQ +N
Sbjct: 746 GAPGISHLLFADDTLLFFKADCEQARLIKGVLNEYALGTGQLVN 789


>gb|ABA98491.1| retrotransposon protein, putative, unclassified [Oryza sativa
            Japonica Group]
          Length = 1621

 Score = 92.8 bits (229), Expect(2) = 6e-32
 Identities = 46/132 (34%), Positives = 75/132 (56%), Gaps = 2/132 (1%)
 Frame = +1

Query: 10   ITLIPKEKHPSKVTHYKPICMSNFLVKIISKIMQLRLNPMIVSLVSKEQAWFIQGRCIQS 189
            I LIPK K P  +   +PI + N   K++SK++  RL  ++  ++S  Q+ F+ GR I  
Sbjct: 745  IVLIPKVKKPELIKDLRPISLCNVCYKLVSKVLANRLKKILPDVISPAQSAFVPGRLISD 804

Query: 190  NIGLASEMTNELKKKRHG--GNMILKIEITQAYDTLSWVFLKQVLKQFGFAEKWINWIFV 363
            NI +A EMT+ ++ KR G  G    K+++++AYD + W FL  ++ + GF   W+N I  
Sbjct: 805  NILIADEMTHYMRNKRSGQVGYAAFKLDMSKAYDRVEWSFLHDMILKLGFHTDWVNLIMK 864

Query: 364  LLETSMLSILIN 399
             + T    I +N
Sbjct: 865  CVSTVTYRIRVN 876



 Score = 70.9 bits (172), Expect(2) = 6e-32
 Identities = 39/90 (43%), Positives = 51/90 (56%)
 Frame = +2

Query: 419  FSVGRGLKQGDPISPLLFALAEDVLSGGTNFLRDRGLTKPMVRVRGHPGPSHLLFADDVL 598
            FS GRGL+QGDP+SP LF L  +  S   +   + G    +   +G P  SHLLFADD L
Sbjct: 883  FSPGRGLRQGDPLSPYLFLLCAEGFSALLSKTEEEGRLHGIRICQGAPSVSHLLFADDSL 942

Query: 599  ICTKGDLKGLRHLQVLLSRYEAASGQALNK 688
            I  + +    + LQ +L  YE  SGQ +NK
Sbjct: 943  ILCRANGGEAQQLQTILQIYEECSGQVINK 972