BLASTX nr result

ID: Coptis23_contig00019523 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00019523
         (757 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002322799.1| predicted protein [Populus trichocarpa] gi|2...   134   2e-29
emb|CAN67410.1| hypothetical protein VITISV_025621 [Vitis vinifera]   122   8e-26
ref|XP_002530155.1| conserved hypothetical protein [Ricinus comm...   101   2e-19
ref|XP_003553616.1| PREDICTED: uncharacterized protein LOC100786...    91   3e-16
ref|XP_003520710.1| PREDICTED: uncharacterized protein LOC100804...    84   2e-14

>ref|XP_002322799.1| predicted protein [Populus trichocarpa] gi|222867429|gb|EEF04560.1|
           predicted protein [Populus trichocarpa]
          Length = 165

 Score =  134 bits (337), Expect = 2e-29
 Identities = 85/160 (53%), Positives = 104/160 (65%), Gaps = 4/160 (2%)
 Frame = +3

Query: 282 SLRRRNSM-TSPLLPKDLHILNLKQQXXXXXXXXXXXXXXVDLELLSLKPT-AYTSLKEI 455
           +LRRRNS+ TS ++P  L   +L                 +D+ LL LK + +YTS+K++
Sbjct: 12  TLRRRNSIATSFVIPTKL---SLHTSSLPPSHLNGTLPSHLDISLLPLKSSLSYTSIKDL 68

Query: 456 LPSLSAVQSPTGAS--THSIYEIPIRNHLVKQAAWAYLQPMSASPGSANRHSFRRIWGRF 629
           LPS + V SPT A+  T S YEIPIRN LVKQAAWAYLQPMS+SP S+  H  RR+W R 
Sbjct: 69  LPS-ATVNSPTSATSNTTSTYEIPIRNRLVKQAAWAYLQPMSSSPDSSGTHFLRRLWLRL 127

Query: 630 STWYLRNPINACYEFISQRVIPPITRAFDLILGAIRVLIN 749
           ST   +NPI AC+ FIS RVIP IT AFD IL AIRV  N
Sbjct: 128 ST---KNPITACFGFISFRVIPSITNAFDRILRAIRVHFN 164


>emb|CAN67410.1| hypothetical protein VITISV_025621 [Vitis vinifera]
          Length = 735

 Score =  122 bits (306), Expect = 8e-26
 Identities = 77/169 (45%), Positives = 96/169 (56%), Gaps = 15/169 (8%)
 Frame = +3

Query: 279  NSLRRRNSMTSPLLPKDLHILN-------------LKQQXXXXXXXXXXXXXXVDLELLS 419
            ++LRRRNS+ +  +P  L + +             ++                VD EL+S
Sbjct: 566  SNLRRRNSIGTAAIPTKLTLPSKAHYSSSFPRPNGVRVSSSTSSSSPQSSFPNVDFELIS 625

Query: 420  LKPTAYTSLKEILPSLSAVQSPTGASTHS--IYEIPIRNHLVKQAAWAYLQPMSASPGSA 593
            LK  AYTSLK++LPS SA QSPT A T S   YEI IRN LVKQAAWAYLQPMSASPGS+
Sbjct: 626  LKSLAYTSLKDLLPSTSAAQSPTAAGTGSGSCYEISIRNRLVKQAAWAYLQPMSASPGSS 685

Query: 594  NRHSFRRIWGRFSTWYLRNPINACYEFISQRVIPPITRAFDLILGAIRV 740
                F R+   FS   LRN ++ C  FI++ +   I RAFD IL  I V
Sbjct: 686  GGRLFDRMLLGFSMECLRNRVSTCLGFINRHIFSAIIRAFDRILRMIGV 734


>ref|XP_002530155.1| conserved hypothetical protein [Ricinus communis]
           gi|223530316|gb|EEF32210.1| conserved hypothetical
           protein [Ricinus communis]
          Length = 181

 Score =  101 bits (251), Expect = 2e-19
 Identities = 77/174 (44%), Positives = 95/174 (54%), Gaps = 18/174 (10%)
 Frame = +3

Query: 282 SLRRRNSM-TSPLLPKDL-------HILNLKQQXXXXXXXXXXXXXX----VDLELLSLK 425
           SLRRRNS+ TS  +P  L       H  +L  Q                  V  EL S K
Sbjct: 19  SLRRRNSISTSVFIPAKLTLPSQPFHTSSLPPQSTTNGTINCNGSGNGNDVVAFELASFK 78

Query: 426 PTA--YTSLKEILPSLSAVQSPTGASTH----SIYEIPIRNHLVKQAAWAYLQPMSASPG 587
            ++  YTSLK+ILPS +AV SPT A+      S YEI IRNHLVKQAAWAYLQPMS+SP 
Sbjct: 79  SSSLSYTSLKDILPS-TAVNSPTPAAATPTCGSAYEISIRNHLVKQAAWAYLQPMSSSPD 137

Query: 588 SANRHSFRRIWGRFSTWYLRNPINACYEFISQRVIPPITRAFDLILGAIRVLIN 749
           S+++H  +R+W +FST     PI AC  F        IT  FD I+  I + +N
Sbjct: 138 SSSQHFLQRLWLKFST---AGPITACIRF--------ITLVFDRIICLICIQMN 180


>ref|XP_003553616.1| PREDICTED: uncharacterized protein LOC100786476 [Glycine max]
          Length = 155

 Score = 90.5 bits (223), Expect = 3e-16
 Identities = 66/156 (42%), Positives = 82/156 (52%), Gaps = 4/156 (2%)
 Frame = +3

Query: 285 LRRRNSMTSPLLPKDLHILNLKQQXXXXXXXXXXXXXXVDLELLSLKP---TAYTSLKEI 455
           LRR NS+ +P +PK        Q+                 EL+SLK     +YTSL+++
Sbjct: 18  LRRHNSIAAPSVPKLFLPATPPQRT-------------TSFELVSLKSPFSASYTSLRDV 64

Query: 456 LPS-LSAVQSPTGASTHSIYEIPIRNHLVKQAAWAYLQPMSASPGSANRHSFRRIWGRFS 632
           LPS  +AV SPT AS +S  EI IRN LVKQAAWAYLQPMSASPG A+   F        
Sbjct: 65  LPSPYAAVNSPT-ASAYSGQEISIRNRLVKQAAWAYLQPMSASPGGASTPHF-------- 115

Query: 633 TWYLRNPINACYEFISQRVIPPITRAFDLILGAIRV 740
              LR     C  F     IP ++R F  +L A+RV
Sbjct: 116 ---LRRLSATCLGFFYHHFIPVVSRVFSRMLHALRV 148


>ref|XP_003520710.1| PREDICTED: uncharacterized protein LOC100804851 [Glycine max]
          Length = 156

 Score = 84.3 bits (207), Expect = 2e-14
 Identities = 64/153 (41%), Positives = 79/153 (51%), Gaps = 1/153 (0%)
 Frame = +3

Query: 285 LRRRNSMTSPLLPKDLHILNLKQQXXXXXXXXXXXXXXVDLELLSLKPTAYTSLKEILPS 464
           L R NS+T P  PK    L+L                   + L+S    +YTSL+++LPS
Sbjct: 18  LHRHNSITGPSAPK----LSLPATPPQRTSSFEL------VSLMSPFSASYTSLRDMLPS 67

Query: 465 -LSAVQSPTGASTHSIYEIPIRNHLVKQAAWAYLQPMSASPGSANRHSFRRIWGRFSTWY 641
             +AV SPT AS +S  EI IRN LVKQAAWAYLQPMSAS G A+  +F           
Sbjct: 68  PYAAVNSPT-ASVYSGQEISIRNRLVKQAAWAYLQPMSASQGGASTPNF----------- 115

Query: 642 LRNPINACYEFISQRVIPPITRAFDLILGAIRV 740
           LR    AC  F      P +TR F  +L A+RV
Sbjct: 116 LRRLSAACLGFFYHHFFPAVTRFFRRMLHALRV 148


Top