BLASTX nr result
ID: Coptis23_contig00019522
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Coptis23_contig00019522
(825 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_002331075.1| predicted protein [Populus trichocarpa] gi|2... 76 1e-16
gb|ABV21212.1| Ty1_Copia-element protein [Arabidopsis thaliana] 63 6e-14
gb|AAF99785.1|AC012463_2 T2E6.4 [Arabidopsis thaliana] 63 1e-13
gb|AAG50806.1|AC079281_8 unknown protein [Arabidopsis thaliana] 63 3e-13
gb|ABW81051.1| tn7 reverse transcriptase [Arabidopsis lyrata sub... 58 3e-12
>ref|XP_002331075.1| predicted protein [Populus trichocarpa] gi|222873039|gb|EEF10170.1|
predicted protein [Populus trichocarpa]
Length = 517
Score = 76.3 bits (186), Expect(2) = 1e-16
Identities = 42/120 (35%), Positives = 63/120 (52%), Gaps = 1/120 (0%)
Frame = +3
Query: 75 PLTVLEQVAKVCMKFLWSGSDMKNKMHHAGKKCTSLTKKEGGLGIIDLKLWNIAAYCGLV 254
P V++ V ++ FLWSGSDM+ L KKEGGLGI +K WN A +
Sbjct: 119 PGQVIKNVEQIMKSFLWSGSDMRTTGAKVAWDQVCLPKKEGGLGIKSIKEWNKIALLKHI 178
Query: 255 FKVISKGK-SLWEKWIWKQNLKNKFF*TMRIPKDCS*VWRGILEMRPIAKQYITYSIATG 431
+ + + S+W WI L+ + F T++ P++CS W IL++R +A + Y I G
Sbjct: 179 WNLCNDSDGSIWSTWIRSNLLRGRNFWTIKTPQNCSWAWGKILKLRSLAWPKMKYIIGDG 238
Score = 36.2 bits (82), Expect(2) = 1e-16
Identities = 17/27 (62%), Positives = 21/27 (77%)
Frame = +1
Query: 4 LSYAGKLQLIHSVLSTFHVYWAKTPLL 84
LSYAG++QLI+SVL + VYWA LL
Sbjct: 92 LSYAGRVQLINSVLFSIQVYWASLFLL 118
>gb|ABV21212.1| Ty1_Copia-element protein [Arabidopsis thaliana]
Length = 438
Score = 62.8 bits (151), Expect(3) = 6e-14
Identities = 36/121 (29%), Positives = 55/121 (45%), Gaps = 2/121 (1%)
Frame = +3
Query: 75 PLTVLEQVAKVCMKFLWSGSDMKNKMHHAGKKCTSLTKKEGGLGIIDLKLWNIAAYCGLV 254
P + ++ +C +FLWSG ++ L K EGGLG+ WN A L+
Sbjct: 96 PKGCIREIESMCARFLWSGGTDEHHKAKVSWSTVCLPKAEGGLGVRKFTEWNTALNLKLI 155
Query: 255 FKVISKGKSLWEKWIWKQNLKNKF--F*TMRIPKDCS*VWRGILEMRPIAKQYITYSIAT 428
+ + S SLW W NL F ++ S WR +L +RP+A +++ SI
Sbjct: 156 WLLFSNSGSLWVAWHLFHNLSTSVSNFWLIKEGTTDSWNWRCLLRLRPLASKFLFCSIGN 215
Query: 429 G 431
G
Sbjct: 216 G 216
Score = 30.8 bits (68), Expect(3) = 6e-14
Identities = 13/24 (54%), Positives = 18/24 (75%)
Frame = +1
Query: 4 LSYAGKLQLIHSVLSTFHVYWAKT 75
LS+AG+LQL+ SV+S V+W T
Sbjct: 69 LSFAGRLQLLSSVISGIVVFWMST 92
Score = 29.6 bits (65), Expect(3) = 6e-14
Identities = 28/116 (24%), Positives = 48/116 (41%), Gaps = 10/116 (8%)
Frame = +2
Query: 494 LPLDATVSDLLTHGRWNAVVHDLPQGTLKENILEIEV--------CSNLTEDRTIW-IPH 646
+PL + V+D++ RW L N L + L ED +W + +
Sbjct: 246 IPLCSKVADVVNGNRW------LLPSPRSSNALNLHAFLTTLSIPLQPLVEDSYLWKVEN 299
Query: 647 PNGV-YTSKSAYFALKIPRETVQWYNMVWGKLVVPKHSFTA*QLFSGSLPTQDRLI 811
+ + ++S + AL+ W + VW K V PK++F L T+ R+I
Sbjct: 300 CSDIGFSSAHTWNALRHKEVEKPWVSSVWFKGVTPKNAFNMWITHQDRLRTKLRMI 355
>gb|AAF99785.1|AC012463_2 T2E6.4 [Arabidopsis thaliana]
Length = 740
Score = 62.8 bits (151), Expect(3) = 1e-13
Identities = 34/120 (28%), Positives = 59/120 (49%), Gaps = 1/120 (0%)
Frame = +3
Query: 75 PLTVLEQVAKVCMKFLWSGSDMKNKMHHAGKKCTSLTKKEGGLGIIDLKLWNIAAYCGLV 254
P ++++ K+C FLWSG ++ K K+EGGLGI L N + L+
Sbjct: 405 PAGCIKEIEKLCSAFLWSGPELNPKKAKITWTSLCKLKQEGGLGIKSLLEANKVSCLKLI 464
Query: 255 FKVISKGKSLWEKWIWKQNLKNKFF*TMRIPKDC-S*VWRGILEMRPIAKQYITYSIATG 431
++++S+ SLW W+W ++ F + S +W+ +L+ R +AK I +G
Sbjct: 465 WRLVSRQSSLWVNWVWTYIIRKGSFWSANDRSSLGSWMWKKLLKYRDVAKSMCKVEIKSG 524
Score = 32.7 bits (73), Expect(3) = 1e-13
Identities = 31/116 (26%), Positives = 49/116 (42%), Gaps = 9/116 (7%)
Frame = +2
Query: 494 LPLDATVSDLLTHGRWNAVVHDLPQGTLKENILEIEVCSNLTEDRT----IWIPHPNG-- 655
+PL ATV+ +L R T N +E E+ S L +R+ I++ +G
Sbjct: 554 IPLAATVATVLASHRTKH------HRTAIYNKIEAEIQSILQRERSGAPDIFLWRSSGDN 607
Query: 656 ---VYTSKSAYFALKIPRETVQWYNMVWGKLVVPKHSFTA*QLFSGSLPTQDRLIK 814
+ +K + +++ QWY VW PK+SF L T DR+ K
Sbjct: 608 FRQSFITKVTWHNIRVIHTHRQWYKGVWFSYNTPKYSFLLWLAIHDRLSTGDRIKK 663
Score = 26.9 bits (58), Expect(3) = 1e-13
Identities = 11/21 (52%), Positives = 16/21 (76%)
Frame = +1
Query: 4 LSYAGKLQLIHSVLSTFHVYW 66
LSYAG+L LI+SV+ + +W
Sbjct: 378 LSYAGRLALINSVIVSLSNFW 398
>gb|AAG50806.1|AC079281_8 unknown protein [Arabidopsis thaliana]
Length = 1213
Score = 62.8 bits (151), Expect(3) = 3e-13
Identities = 33/119 (27%), Positives = 56/119 (47%)
Frame = +3
Query: 75 PLTVLEQVAKVCMKFLWSGSDMKNKMHHAGKKCTSLTKKEGGLGIIDLKLWNIAAYCGLV 254
P ++++ +C +FLWSG+ + K L K EGGLG+ L WN L+
Sbjct: 825 PKGCIKRIESLCSRFLWSGNIEQAKGIKVSWAALCLPKSEGGLGLRRLLEWNKTLSMRLI 884
Query: 255 FKVISKGKSLWEKWIWKQNLKNKFF*TMRIPKDCS*VWRGILEMRPIAKQYITYSIATG 431
+++ SLW W +L F + + S W+ +L +RP+A Q++ + G
Sbjct: 885 WRLFVAKDSLWADWQHLHHLSRGSFWAVEGGQSDSWTWKRLLSLRPLAHQFLVCKVGNG 943
Score = 31.2 bits (69), Expect(3) = 3e-13
Identities = 28/111 (25%), Positives = 50/111 (45%), Gaps = 6/111 (5%)
Frame = +2
Query: 494 LPLDATVSDLLTHGRWNAVV-HDLPQGTLKENILEIEVCSNLTEDRTIWIPHPNGV---- 658
+PL A V+ + W V P + +++ + V S ED + NG
Sbjct: 973 VPLLAKVASAFSEDGWRLPVSRSAPAKGIHDHLCTVPVPSTAQEDVDRYEWSVNGFLCQG 1032
Query: 659 YTSKSAYFALKIPRETVQ-WYNMVWGKLVVPKHSFTA*QLFSGSLPTQDRL 808
+++ + A++ P+ TV+ W + +W K VPK++F L T+ RL
Sbjct: 1033 FSAAKTWEAIR-PKATVKSWASSIWFKGAVPKYAFNMWVSHLNRLLTRQRL 1082
Score = 26.6 bits (57), Expect(3) = 3e-13
Identities = 13/27 (48%), Positives = 18/27 (66%)
Frame = +1
Query: 4 LSYAGKLQLIHSVLSTFHVYWAKTPLL 84
LS+AG++QLI SV+ +W T LL
Sbjct: 798 LSFAGRIQLISSVIFGSINFWMSTFLL 824
>gb|ABW81051.1| tn7 reverse transcriptase [Arabidopsis lyrata subsp. lyrata]
Length = 441
Score = 57.8 bits (138), Expect(3) = 3e-12
Identities = 33/120 (27%), Positives = 60/120 (50%), Gaps = 1/120 (0%)
Frame = +3
Query: 75 PLTVLEQVAKVCMKFLWSGSDMKNKMHHAGKKCTSLTKKEGGLGIIDLKLWNIAAYCGLV 254
P ++++ +C FLWSG ++ K + K+EGGLG+ L N L+
Sbjct: 52 PNACIKEIDGLCSAFLWSGPELNRKKAKVSWNDVCMPKEEGGLGLRSLTEANKVCCLKLI 111
Query: 255 FKVISKGKSLWEKWIWKQNLKNKFF*TMRIPKDC-S*VWRGILEMRPIAKQYITYSIATG 431
++++S SLW +W+ + ++ F ++R S +WR +L+ R +A + Y I G
Sbjct: 112 WRLLS-SSSLWVQWLRQYVIRKGSFWSLRDTSTLGSWMWRKLLKYRHLASGFTQYEIRNG 170
Score = 32.7 bits (73), Expect(3) = 3e-12
Identities = 26/110 (23%), Positives = 47/110 (42%), Gaps = 4/110 (3%)
Frame = +2
Query: 494 LPLDATVSDLLTHGRWNAVVHDLPQGTLKENILEIEVCSNL-TEDRTIWIPHPNGV---Y 661
+ + ATV++ LTH R L Q ++ + E+ + TED +W +
Sbjct: 200 IDIHATVAEALTHRRRRHRADHLNQ--MEAQLEELRTKGLVETEDVVLWKGKGGRFKPSF 257
Query: 662 TSKSAYFALKIPRETVQWYNMVWGKLVVPKHSFTA*QLFSGSLPTQDRLI 811
++K + + + +WY +W PK+SF L T DR++
Sbjct: 258 STKETWADTREQKPRNEWYQGIWFSHATPKYSFITWLATKNRLSTGDRMM 307
Score = 26.9 bits (58), Expect(3) = 3e-12
Identities = 11/21 (52%), Positives = 16/21 (76%)
Frame = +1
Query: 4 LSYAGKLQLIHSVLSTFHVYW 66
LS+AG+LQLI SV+ + +W
Sbjct: 25 LSFAGRLQLISSVIHSLTNFW 45