BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00018379
         (503 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|ABE01124.1| RNA-dependent RNA polymerase [Gossypium hirsutum]       86   1e-34
ref|XP_002311536.1| rna-dependent RNA polymerase [Populus tricho...    89   2e-34
gb|ABQ45352.1| RNA-dependent RNA polymerase [Gossypium hirsutum]       86   2e-33
ref|XP_003518619.1| PREDICTED: RNA-dependent RNA polymerase 1-li...    80   3e-31
ref|XP_002284914.1| PREDICTED: RNA-dependent RNA polymerase 1 [V...    87   2e-28

>gb|ABE01124.1| RNA-dependent RNA polymerase [Gossypium hirsutum]
          Length = 1110

 Score = 86.3 bits (212), Expect(2) = 1e-34
 Identities = 41/70 (58%), Positives = 52/70 (74%)
 Frame = +3

Query: 294 TDFTTSSCIGQSSAICLELPQSCGLSAVRDNFHYYSENEDRFMLESGSPFSQSLELVPIV 473
           TDFT S+CIGQSS +CLELP +  L   R+NF YY ENE R +LESGS +S +L LVPIV
Sbjct: 210 TDFTRSNCIGQSSVLCLELPHNLQLPNFRENFAYYKENEGRLVLESGSSYSCNLSLVPIV 269

Query: 474 GPPQGLELPY 503
            P + ++LP+
Sbjct: 270 CPSRVIDLPF 279



 Score = 85.5 bits (210), Expect(2) = 1e-34
 Identities = 37/61 (60%), Positives = 49/61 (80%)
 Frame = +1

Query: 1   FYDSIWQIQLHRPRSLNTKYLVIQVFGAPRIYEKLTCSSDDIYGDPDLNYFRDTPDDQWV 180
           FY++IWQI+L  P S  +K+L+IQ+FGAPRIYEK   +S+ ++ DP LNYF+D PDDQWV
Sbjct: 148 FYENIWQIELRCPHSQTSKHLLIQLFGAPRIYEKEVPASECVFDDPLLNYFKDMPDDQWV 207

Query: 181 R 183
           R
Sbjct: 208 R 208


>ref|XP_002311536.1| rna-dependent RNA polymerase [Populus trichocarpa]
           gi|222851356|gb|EEE88903.1| rna-dependent RNA polymerase
           [Populus trichocarpa]
          Length = 1133

 Score = 88.6 bits (218), Expect(2) = 2e-34
 Identities = 37/60 (61%), Positives = 49/60 (81%)
 Frame = +1

Query: 4   YDSIWQIQLHRPRSLNTKYLVIQVFGAPRIYEKLTCSSDDIYGDPDLNYFRDTPDDQWVR 183
           +++IWQI+LHRPR    KYL+IQ++GAPRIYE+   SS +++ DP LNYFRD PD+QWVR
Sbjct: 150 FENIWQIELHRPRGQTVKYLLIQLYGAPRIYERDVPSSSNVFEDPLLNYFRDVPDEQWVR 209



 Score = 82.4 bits (202), Expect(2) = 2e-34
 Identities = 40/70 (57%), Positives = 48/70 (68%)
 Frame = +3

Query: 294 TDFTTSSCIGQSSAICLELPQSCGLSAVRDNFHYYSENEDRFMLESGSPFSQSLELVPIV 473
           TDFT S  IG SS++CLELP    L    +NF YY ENE  F+LESG  FS++ +LVPIV
Sbjct: 211 TDFTPSCGIGHSSSLCLELPNHLQLPNFNENFFYYKENEGTFVLESGLTFSRNPDLVPIV 270

Query: 474 GPPQGLELPY 503
           GP  G+ LPY
Sbjct: 271 GPSSGVNLPY 280


>gb|ABQ45352.1| RNA-dependent RNA polymerase [Gossypium hirsutum]
          Length = 1110

 Score = 85.5 bits (210), Expect(2) = 2e-33
 Identities = 37/61 (60%), Positives = 49/61 (80%)
 Frame = +1

Query: 1   FYDSIWQIQLHRPRSLNTKYLVIQVFGAPRIYEKLTCSSDDIYGDPDLNYFRDTPDDQWV 180
           FY++IWQI+L  P S  +K+L+IQ+FGAPRIYEK   +S+ ++ DP LNYF+D PDDQWV
Sbjct: 148 FYENIWQIELRCPHSQTSKHLLIQLFGAPRIYEKEVPASECVFDDPLLNYFKDMPDDQWV 207

Query: 181 R 183
           R
Sbjct: 208 R 208



 Score = 82.0 bits (201), Expect(2) = 2e-33
 Identities = 40/70 (57%), Positives = 51/70 (72%)
 Frame = +3

Query: 294 TDFTTSSCIGQSSAICLELPQSCGLSAVRDNFHYYSENEDRFMLESGSPFSQSLELVPIV 473
           TDFT S+CIGQSS + LELP +  L   R+NF YY ENE R +LESGS +S +L LVPIV
Sbjct: 210 TDFTRSNCIGQSSVLWLELPHNLQLPNFRENFAYYKENEGRLVLESGSSYSCNLSLVPIV 269

Query: 474 GPPQGLELPY 503
            P + ++LP+
Sbjct: 270 CPSRVIDLPF 279


>ref|XP_003518619.1| PREDICTED: RNA-dependent RNA polymerase 1-like [Glycine max]
          Length = 1125

 Score = 80.1 bits (196), Expect(2) = 3e-31
 Identities = 31/60 (51%), Positives = 48/60 (80%)
 Frame = +1

Query: 4   YDSIWQIQLHRPRSLNTKYLVIQVFGAPRIYEKLTCSSDDIYGDPDLNYFRDTPDDQWVR 183
           Y++IW+I+LHRPR+  T+YL+IQ+ GAPR++E    +S +I+ DP  N+F+D PD+QW+R
Sbjct: 153 YENIWKIELHRPRNETTRYLLIQLLGAPRVFENDVPTSTNIFDDPLFNFFKDAPDEQWIR 212



 Score = 80.1 bits (196), Expect(2) = 3e-31
 Identities = 39/69 (56%), Positives = 49/69 (71%)
 Frame = +3

Query: 297 DFTTSSCIGQSSAICLELPQSCGLSAVRDNFHYYSENEDRFMLESGSPFSQSLELVPIVG 476
           DFT  S IGQSSAICLELP    L   R+NF YY E+E ++ L++G PFSQ+  LVPIV 
Sbjct: 215 DFTPESRIGQSSAICLELPNGRQLPNFRENFAYYEESERQYTLQTGVPFSQNWGLVPIVA 274

Query: 477 PPQGLELPY 503
           PP G+++ Y
Sbjct: 275 PPLGVKISY 283


>ref|XP_002284914.1| PREDICTED: RNA-dependent RNA polymerase 1 [Vitis vinifera]
          Length = 1121

 Score = 87.0 bits (214), Expect(2) = 2e-28
 Identities = 41/69 (59%), Positives = 50/69 (72%)
 Frame = +3

Query: 297 DFTTSSCIGQSSAICLELPQSCGLSAVRDNFHYYSENEDRFMLESGSPFSQSLELVPIVG 476
           DFT S  IGQS A+CLELP    L   R+NF YY EN+ +F+LESGS +S +L LVPI+G
Sbjct: 204 DFTPSCFIGQSFALCLELPYGSQLPNFRENFAYYKENDGKFILESGSSYSHNLHLVPILG 263

Query: 477 PPQGLELPY 503
           PPQG  LP+
Sbjct: 264 PPQGSSLPF 272



 Score = 63.5 bits (153), Expect(2) = 2e-28
 Identities = 33/61 (54%), Positives = 43/61 (70%), Gaps = 1/61 (1%)
 Frame = +1

Query: 4   YDSIWQIQLHRPRSLNTKYLVIQVFGAPRIYEKLTCSSDDIYGDPDLN-YFRDTPDDQWV 180
           Y++IWQIQL  PR   TK+L+IQ+ GAP+IYEK      D+   P L+ YF++ PDDQWV
Sbjct: 150 YENIWQIQLQHPRGQITKFLLIQLLGAPQIYEK------DV---PVLSYYFKEAPDDQWV 200

Query: 181 R 183
           R
Sbjct: 201 R 201