BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00018355
         (352 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CBI19452.3| unnamed protein product [Vitis vinifera]              131   7e-29
ref|XP_002525440.1| pentatricopeptide repeat-containing protein,...    85   7e-15
ref|XP_002883423.1| pentatricopeptide repeat-containing protein ...    84   2e-14
ref|XP_003632631.1| PREDICTED: pentatricopeptide repeat-containi...    81   8e-14
ref|XP_002457547.1| hypothetical protein SORBIDRAFT_03g009160 [S...    81   8e-14

>emb|CBI19452.3| unnamed protein product [Vitis vinifera]
          Length = 921

 Score =  131 bits (329), Expect = 7e-29
 Identities = 62/115 (53%), Positives = 83/115 (72%)
 Frame = +2

Query: 5   GLSISTCNAILNMYAKNSRISDAEKVFDAISHKDSYTWNVMMDGYSLSGRFADAVRIFLE 184
           G+S+S  NAIL MYAK +RI+DAEK+F  + ++DSY+WN MMDGYS + +F D + IFL+
Sbjct: 466 GVSLSVSNAILKMYAKFNRIADAEKIFKGMKNRDSYSWNAMMDGYSRNAKFEDVLMIFLD 525

Query: 185 MHKQGLPSDFMTFSILLTACSRMGSFHLGKQFHAFIVKHIGGRGFTHSTSLLSIH 349
           + KQG P D ++ SILLT+C R+ S  LGKQFHA + K   G+   H  SLLSI+
Sbjct: 526 ILKQGFPLDHVSLSILLTSCGRLVSLQLGKQFHAVVAKLFNGQDCPHQDSLLSIN 580



 Score = 57.8 bits (138), Expect = 9e-07
 Identities = 29/89 (32%), Positives = 49/89 (55%)
 Frame = +2

Query: 14  ISTCNAILNMYAKNSRISDAEKVFDAISHKDSYTWNVMMDGYSLSGRFADAVRIFLEMHK 193
           +S  NA+++MY+K   I DA +VF  +  KD ++W  M+ G +  G   +A+++F  M  
Sbjct: 577 LSINNALISMYSKCGSIKDAAQVFLKMERKDVFSWTAMITGCAHHGLAVEALQLFERMKT 636

Query: 194 QGLPSDFMTFSILLTACSRMGSFHLGKQF 280
            G+  + +TF  LL AC+  G    G  +
Sbjct: 637 DGIKPNQVTFLALLMACAHGGLVQEGSYY 665



 Score = 57.0 bits (136), Expect = 2e-06
 Identities = 32/117 (27%), Positives = 59/117 (50%), Gaps = 6/117 (5%)
 Frame = +2

Query: 17  STCNAILNMYAKNSRISDAEKVFDAISHKDSYTWNVMMDGYSLSGRFADAVRIFLEMHKQ 196
           S  N+++  Y+K   +  A ++F+ +  +D  +WN M+ GY  + +      IF  M   
Sbjct: 363 SITNSLITFYSKCREVGKAREIFERLLLRDIISWNSMLAGYEQNEQQGRCFDIFKRMMLS 422

Query: 197 GLPSDFMTFSILLTACSRMGS----FHLGKQFHAFIVKHI--GGRGFTHSTSLLSIH 349
           G+  D  + +I+  A SR  S    F  GK+ H +I++ I  GG   + S ++L ++
Sbjct: 423 GIEPDSHSLTIIFNAASRDSSGLIYFRRGKEIHGYILRRITPGGVSLSVSNAILKMY 479



 Score = 55.1 bits (131), Expect = 6e-06
 Identities = 29/95 (30%), Positives = 53/95 (55%), Gaps = 1/95 (1%)
 Frame = +2

Query: 17  STCNAILNMYAKNSRISDAEKVFDAISHKDSYTWNVMMDGYSLSGRFADAVRIFLEMHKQ 196
           S C+  L   +++ R+  A+++FD   ++D  +W+ ++  YS  G FA A  +F +M  +
Sbjct: 56  SACSKFLVSQSEHERLKCAQQLFDNFPNRDVISWSALIAAYSRCGNFAQAFGLFQKMMGE 115

Query: 197 GL-PSDFMTFSILLTACSRMGSFHLGKQFHAFIVK 298
           GL P+ F   S+L  +CS  G   L +Q H + ++
Sbjct: 116 GLQPNGFSLASLLKVSCS-TGEIGLCRQLHGWSIR 149


>ref|XP_002525440.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223535253|gb|EEF36930.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 878

 Score = 84.7 bits (208), Expect = 7e-15
 Identities = 40/98 (40%), Positives = 60/98 (61%)
 Frame = +2

Query: 5   GLSISTCNAILNMYAKNSRISDAEKVFDAISHKDSYTWNVMMDGYSLSGRFADAVRIFLE 184
           G S   CN ++++YAKN  I  A KVFD +  KDS +W  ++  YS +G   +A+R+F E
Sbjct: 221 GTSSIACNPLIDLYAKNGFIRSARKVFDELCMKDSVSWVAVISSYSQNGFGEEAIRLFCE 280

Query: 185 MHKQGLPSDFMTFSILLTACSRMGSFHLGKQFHAFIVK 298
           MH  GL      FS +L+AC+++  F +G+Q HA + K
Sbjct: 281 MHISGLSPTPYVFSSVLSACAKIELFDIGEQLHALVFK 318



 Score = 75.5 bits (184), Expect = 4e-12
 Identities = 34/95 (35%), Positives = 58/95 (61%)
 Frame = +2

Query: 14  ISTCNAILNMYAKNSRISDAEKVFDAISHKDSYTWNVMMDGYSLSGRFADAVRIFLEMHK 193
           +S  NA++++YA+  RI +A   F+ I  KDS +WN +M G++ SG   +A++IF +M +
Sbjct: 628 LSIGNALVSLYARCGRIQEANLAFEKIDAKDSISWNALMSGFAQSGYCEEALKIFAQMTR 687

Query: 194 QGLPSDFMTFSILLTACSRMGSFHLGKQFHAFIVK 298
             + +   TF   ++A + M +   GKQ HA I+K
Sbjct: 688 ANIKASLFTFGSAVSAAANMANIKQGKQIHAMIMK 722



 Score = 61.2 bits (147), Expect = 8e-08
 Identities = 30/97 (30%), Positives = 53/97 (54%)
 Frame = +2

Query: 8   LSISTCNAILNMYAKNSRISDAEKVFDAISHKDSYTWNVMMDGYSLSGRFADAVRIFLEM 187
           L    CNA++ +Y++      A++VF  I  KD  ++N ++ G S  G    A+ +F +M
Sbjct: 323 LETYVCNALVTLYSRLGNFISAQQVFSKIKCKDEVSYNSLISGLSQQGCSDRALELFKKM 382

Query: 188 HKQGLPSDFMTFSILLTACSRMGSFHLGKQFHAFIVK 298
               L  D +T + LL+AC+ + S   G+Q H++ +K
Sbjct: 383 QLDHLKPDCVTVASLLSACASIKSLSKGEQLHSYAIK 419



 Score = 61.2 bits (147), Expect = 8e-08
 Identities = 26/92 (28%), Positives = 54/92 (58%)
 Frame = +2

Query: 11  SISTCNAILNMYAKNSRISDAEKVFDAISHKDSYTWNVMMDGYSLSGRFADAVRIFLEMH 190
           ++  C+ +++MYAK  ++  A  +   ++ +D  +W  ++ GY+    F +A+ +F EM 
Sbjct: 526 NVYVCSVLIDMYAKLGKLDIARGILRRLNEEDVVSWTALIAGYTQHDLFTEALNLFDEML 585

Query: 191 KQGLPSDFMTFSILLTACSRMGSFHLGKQFHA 286
            +G+ SD + FS  ++AC+ + +   G+Q HA
Sbjct: 586 NRGIQSDNIGFSSAISACAGIQALSQGQQIHA 617



 Score = 60.1 bits (144), Expect = 2e-07
 Identities = 32/98 (32%), Positives = 53/98 (54%)
 Frame = +2

Query: 14   ISTCNAILNMYAKNSRISDAEKVFDAISHKDSYTWNVMMDGYSLSGRFADAVRIFLEMHK 193
            I   NA++ +YAK   I  A++ F  I  K+  +WN M+ GYS  G   +AV +F +M +
Sbjct: 729  IEVSNALITLYAKCGCIDGAKREFFEIPEKNEISWNAMITGYSQHGCGIEAVNLFQKMKQ 788

Query: 194  QGLPSDFMTFSILLTACSRMGSFHLGKQFHAFIVKHIG 307
             G   + +TF  +++ACS +G  + G  +   + K  G
Sbjct: 789  VGAKPNHVTFVGVISACSHVGLVNEGLAYFESMSKEHG 826


>ref|XP_002883423.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata] gi|297329263|gb|EFH59682.1|
           pentatricopeptide repeat-containing protein [Arabidopsis
           lyrata subsp. lyrata]
          Length = 679

 Score = 83.6 bits (205), Expect = 2e-14
 Identities = 35/108 (32%), Positives = 72/108 (66%)
 Frame = +2

Query: 26  NAILNMYAKNSRISDAEKVFDAISHKDSYTWNVMMDGYSLSGRFADAVRIFLEMHKQGLP 205
           +++++MYAK++RI D+E+VF  +  +DS +WN ++ GY  +GR+ +A+R+F +M    + 
Sbjct: 245 SSLVDMYAKSARIEDSERVFSHLYRRDSISWNSLVAGYVQNGRYNEALRLFRQMVSAKVR 304

Query: 206 SDFMTFSILLTACSRMGSFHLGKQFHAFIVKHIGGRGFTHSTSLLSIH 349
              + FS ++ AC+ + + HLGKQ H ++++   GR    +++L+ ++
Sbjct: 305 PGAVAFSSVIPACAHLATLHLGKQLHGYVLRGGFGRNIFIASALVDMY 352



 Score = 63.5 bits (153), Expect = 2e-08
 Identities = 32/93 (34%), Positives = 51/93 (54%)
 Frame = +2

Query: 20  TCNAILNMYAKNSRISDAEKVFDAISHKDSYTWNVMMDGYSLSGRFADAVRIFLEMHKQG 199
           T NA++NMY+K   I    KVF+ +  KD  ++N ++ GY+ SG + DA+R+  EM    
Sbjct: 142 TGNALMNMYSKLLGIDSVRKVFELMPRKDVVSYNTVIAGYAQSGMYEDALRMVREMGTSD 201

Query: 200 LPSDFMTFSILLTACSRMGSFHLGKQFHAFIVK 298
           L  D  T S +L   S       GK+ H ++++
Sbjct: 202 LKPDAFTLSSVLPIFSEYVDVLKGKEIHGYVIR 234



 Score = 63.5 bits (153), Expect = 2e-08
 Identities = 30/84 (35%), Positives = 52/84 (61%)
 Frame = +2

Query: 5   GLSISTCNAILNMYAKNSRISDAEKVFDAISHKDSYTWNVMMDGYSLSGRFADAVRIFLE 184
           G +I   +A+++MY+K   I  A K+FD ++  D  +W  ++ G++L G   +AV +F E
Sbjct: 339 GRNIFIASALVDMYSKCGNIQAARKIFDRMNLHDEVSWTAIIMGHALHGHGHEAVSLFEE 398

Query: 185 MHKQGLPSDFMTFSILLTACSRMG 256
           M +QG+  + + F  +LTACS +G
Sbjct: 399 MKRQGVKPNQVAFVAVLTACSHVG 422


>ref|XP_003632631.1| PREDICTED: pentatricopeptide repeat-containing protein At3g53360,
           mitochondrial-like [Vitis vinifera]
          Length = 755

 Score = 81.3 bits (199), Expect = 8e-14
 Identities = 38/108 (35%), Positives = 64/108 (59%)
 Frame = +2

Query: 26  NAILNMYAKNSRISDAEKVFDAISHKDSYTWNVMMDGYSLSGRFADAVRIFLEMHKQGLP 205
           N ILNMY K   + DA+KVFDA+  ++  +W  ++ GYS +G+  +A+  + +M + G+ 
Sbjct: 102 NHILNMYGKCKSLKDAQKVFDAMPERNVVSWTSVIAGYSQNGQGGNALEFYFQMLQSGVM 161

Query: 206 SDFMTFSILLTACSRMGSFHLGKQFHAFIVKHIGGRGFTHSTSLLSIH 349
            D  TF  ++ ACS +G   LG+Q HA ++K   G       +L+S++
Sbjct: 162 PDQFTFGSIIKACSSLGDIGLGRQLHAHVLKSEFGAHIIAQNALISMY 209



 Score = 61.2 bits (147), Expect = 8e-08
 Identities = 39/117 (33%), Positives = 62/117 (52%), Gaps = 2/117 (1%)
 Frame = +2

Query: 5   GLSISTCNAILNMYAKNSRISDAEKVFDAISHKDSYTWNVMMDGYSLSGRFADAVRIFLE 184
           G  I   NA+++MY K++ I DA  VF  ++ +D  +W  M+ G+S  G   +A+  F E
Sbjct: 196 GAHIIAQNALISMYTKSNLIIDALDVFSRMATRDLISWGSMIAGFSQLGYELEALCYFKE 255

Query: 185 MHKQG--LPSDFMTFSILLTACSRMGSFHLGKQFHAFIVKHIGGRGFTHSTSLLSIH 349
           M  QG  LP++F+ F  + +ACS +     G+Q H   +K   GR      SL  ++
Sbjct: 256 MLHQGVYLPNEFI-FGSVFSACSSLLQPEYGRQLHGMSIKFGLGRDVFAGCSLCDMY 311



 Score = 58.9 bits (141), Expect = 4e-07
 Identities = 31/90 (34%), Positives = 46/90 (51%)
 Frame = +2

Query: 29  AILNMYAKNSRISDAEKVFDAISHKDSYTWNVMMDGYSLSGRFADAVRIFLEMHKQGLPS 208
           ++ +MYAK   +S A  VF  I   D   WN ++ G++  G   +A+  F +M  QGL  
Sbjct: 306 SLCDMYAKCGLLSCARVVFYQIGRPDLVAWNAIIAGFAYGGDAKEAIAFFSQMRHQGLIP 365

Query: 209 DFMTFSILLTACSRMGSFHLGKQFHAFIVK 298
           D +T   LL AC+     + G Q H +I K
Sbjct: 366 DEITVRSLLCACTSPSELYQGMQVHGYINK 395



 Score = 58.9 bits (141), Expect = 4e-07
 Identities = 28/97 (28%), Positives = 55/97 (56%)
 Frame = +2

Query: 17  STCNAILNMYAKNSRISDAEKVFDAISHKDSYTWNVMMDGYSLSGRFADAVRIFLEMHKQ 196
           S  N ++++YAK   +  A K+FD++ + D  +W+ ++ GY+  G   +A+++F  M + 
Sbjct: 505 SVTNGLIDLYAKCGSLKTAHKIFDSMINPDVVSWSSLILGYAQFGYGEEALKLFKTMRRL 564

Query: 197 GLPSDFMTFSILLTACSRMGSFHLGKQFHAFIVKHIG 307
            +  + +TF  +LTACS +G    G + +  + K  G
Sbjct: 565 DVKPNHVTFVGVLTACSHVGLVEEGWKLYGTMEKEFG 601


>ref|XP_002457547.1| hypothetical protein SORBIDRAFT_03g009160 [Sorghum bicolor]
           gi|241929522|gb|EES02667.1| hypothetical protein
           SORBIDRAFT_03g009160 [Sorghum bicolor]
          Length = 762

 Score = 81.3 bits (199), Expect = 8e-14
 Identities = 38/98 (38%), Positives = 57/98 (58%)
 Frame = +2

Query: 5   GLSISTCNAILNMYAKNSRISDAEKVFDAISHKDSYTWNVMMDGYSLSGRFADAVRIFLE 184
           G S+  CN +L+ Y K   I+ A +VF  + H+DS T+N M+ G S  GR  +A+ +F  
Sbjct: 165 GASVVVCNTLLDAYCKQGFIAAARRVFLEMPHRDSITYNAMIMGCSRQGRHGEALELFAA 224

Query: 185 MHKQGLPSDFMTFSILLTACSRMGSFHLGKQFHAFIVK 298
           M ++G+ +   TFS LLT  + M   HLG+Q H   V+
Sbjct: 225 MRREGVDTSHFTFSSLLTVATGMVDLHLGRQIHGLFVR 262



 Score = 58.2 bits (139), Expect = 7e-07
 Identities = 26/91 (28%), Positives = 53/91 (58%)
 Frame = +2

Query: 26  NAILNMYAKNSRISDAEKVFDAISHKDSYTWNVMMDGYSLSGRFADAVRIFLEMHKQGLP 205
           NA+++MY+K   +  A+ +F   S K + +W  ++ G   +G+  +A+++F +M + GL 
Sbjct: 374 NALIDMYSKCGMLDAAKTIFAYKSDKTAISWTALITGCVQNGQNEEALQLFCDMRRAGLS 433

Query: 206 SDFMTFSILLTACSRMGSFHLGKQFHAFIVK 298
            D  T S ++ + S +    +G+Q HA++ K
Sbjct: 434 PDRATCSSIMKSSSSLAVIGIGRQLHAYLTK 464



 Score = 57.0 bits (136), Expect = 2e-06
 Identities = 29/82 (35%), Positives = 49/82 (59%)
 Frame = +2

Query: 11  SISTCNAILNMYAKNSRISDAEKVFDAISHKDSYTWNVMMDGYSLSGRFADAVRIFLEMH 190
           S+ + +A+L+MYAK   + +A + F+ +  K+S TWN ++  Y+  G+  +A+R+F  M 
Sbjct: 470 SVFSGSALLDMYAKCGCLDEAIRTFNEMPEKNSITWNAVISAYAQYGQAKNAIRMFDSML 529

Query: 191 KQGLPSDFMTFSILLTACSRMG 256
             GL  D +TF  +L AC   G
Sbjct: 530 HCGLCPDPVTFLSVLAACGHNG 551