BLASTX nr result

ID: Coptis23_contig00018229 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00018229
         (720 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002885782.1| hypothetical protein ARALYDRAFT_899310 [Arab...    56   8e-06

>ref|XP_002885782.1| hypothetical protein ARALYDRAFT_899310 [Arabidopsis lyrata subsp.
           lyrata] gi|297331622|gb|EFH62041.1| hypothetical protein
           ARALYDRAFT_899310 [Arabidopsis lyrata subsp. lyrata]
          Length = 279

 Score = 55.8 bits (133), Expect = 8e-06
 Identities = 45/198 (22%), Positives = 84/198 (42%), Gaps = 3/198 (1%)
 Frame = +3

Query: 135 TIYVSSMSYLGKNKTLKDLCFRIKKIWTRPVITWLYISLCSAGXXXXXXXXXXXXXXGRG 314
           T++ S+++   +N  +K       K W  P++T  YI+L   G                 
Sbjct: 76  TVHASALTLKNENIKIKYFPVMTFKSWKGPLVTKFYIALFILGYGFLYAIIFCPLLVFSS 135

Query: 315 SMI-VVAVGIXXXXXXXXXXXXXXXVWMLSLVISVLEDCYGLQALGKAEXXXXXXXXXXX 491
            +  +VA  +               VW LS+VIS+LE+ YG++AL KA            
Sbjct: 136 KLFFLVAKSVPLLILLEVYESYLAIVWNLSMVISILEETYGIKALRKAAKIAKGMKPKIF 195

Query: 492 XXSFVVMIL-YSPGILFSMINKNQQAVTTQILIAYGIT-VNFNILVKILSMMAYTVFYFE 665
             +    +L +  G +  +IN  +   +  + +A G+  V  +  +++  ++ YTV YF+
Sbjct: 196 LLNLSFHLLTFGLGQILQLINWRR---SFSVTLATGLVFVCLDFALRMFQLVTYTVVYFQ 252

Query: 666 LKESHGEQIVVEEDMEYS 719
            K    + +    D+EY+
Sbjct: 253 CKSLQSKDVESLGDVEYT 270


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