BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00018174
         (287 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002280003.2| PREDICTED: pentatricopeptide repeat-containi...   122   4e-26
emb|CBI26347.3| unnamed protein product [Vitis vinifera]              119   3e-25
ref|XP_003555488.1| PREDICTED: pentatricopeptide repeat-containi...   111   7e-23
ref|XP_003535468.1| PREDICTED: pentatricopeptide repeat-containi...   110   9e-23
ref|XP_004166077.1| PREDICTED: LOW QUALITY PROTEIN: pentatricope...   110   2e-22

>ref|XP_002280003.2| PREDICTED: pentatricopeptide repeat-containing protein At3g23020
           [Vitis vinifera]
          Length = 881

 Score =  122 bits (305), Expect = 4e-26
 Identities = 61/99 (61%), Positives = 74/99 (74%), Gaps = 5/99 (5%)
 Frame = +3

Query: 6   GKPINGRGKIADINNTR-----SEPLVTFSSYTYNTLMDMYGKAGQLQDASDTFSRMLRE 170
           GK +   GK ++   T      S+P V  SSYTYNTL+D YGKAGQL++ASDTF+ MLRE
Sbjct: 295 GKTLKDEGKTSEPTATSAVESASQPHVCLSSYTYNTLIDTYGKAGQLREASDTFAWMLRE 354

Query: 171 GIVPTIVTFNTMIHICGNNGKFEEVDSLIKKMEELRCLP 287
           GI+P  VTFNTMIHICGN+G+ EE  SL++KMEELRC P
Sbjct: 355 GIIPNTVTFNTMIHICGNHGQLEEAASLMQKMEELRCPP 393


>emb|CBI26347.3| unnamed protein product [Vitis vinifera]
          Length = 862

 Score =  119 bits (298), Expect = 3e-25
 Identities = 56/77 (72%), Positives = 66/77 (85%)
 Frame = +3

Query: 57  SEPLVTFSSYTYNTLMDMYGKAGQLQDASDTFSRMLREGIVPTIVTFNTMIHICGNNGKF 236
           S+P V  SSYTYNTL+D YGKAGQL++ASDTF+ MLREGI+P  VTFNTMIHICGN+G+ 
Sbjct: 298 SQPHVCLSSYTYNTLIDTYGKAGQLREASDTFAWMLREGIIPNTVTFNTMIHICGNHGQL 357

Query: 237 EEVDSLIKKMEELRCLP 287
           EE  SL++KMEELRC P
Sbjct: 358 EEAASLMQKMEELRCPP 374


>ref|XP_003555488.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g23020-like [Glycine max]
          Length = 821

 Score =  111 bits (277), Expect = 7e-23
 Identities = 55/105 (52%), Positives = 74/105 (70%), Gaps = 10/105 (9%)
 Frame = +3

Query: 3   SGKPINGRGK-IADINNTRSEPLV---------TFSSYTYNTLMDMYGKAGQLQDASDTF 152
           SGKP+  + K +   +N  + P +         +F S+TYNTL+D YGKAGQL++AS TF
Sbjct: 245 SGKPLRSKSKPLRSNDNVVASPELDERVACANASFGSHTYNTLIDTYGKAGQLKEASQTF 304

Query: 153 SRMLREGIVPTIVTFNTMIHICGNNGKFEEVDSLIKKMEELRCLP 287
             ML++G+ PT VTFNTMI+ICGN+G+ EEV  L++KMEELRC P
Sbjct: 305 VEMLKQGVAPTTVTFNTMINICGNHGRLEEVSLLVRKMEELRCSP 349


>ref|XP_003535468.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g23020-like [Glycine max]
          Length = 813

 Score =  110 bits (276), Expect = 9e-23
 Identities = 48/72 (66%), Positives = 64/72 (88%)
 Frame = +3

Query: 72  TFSSYTYNTLMDMYGKAGQLQDASDTFSRMLREGIVPTIVTFNTMIHICGNNGKFEEVDS 251
           +F S+TYNTL+D YGKAGQL++AS+TF++ML++G+ PT VTFNTMI+ICGN+G+ EEV  
Sbjct: 270 SFGSHTYNTLIDTYGKAGQLKEASETFAKMLKQGVAPTTVTFNTMINICGNHGQLEEVSL 329

Query: 252 LIKKMEELRCLP 287
           L++KMEELRC P
Sbjct: 330 LVRKMEELRCSP 341


>ref|XP_004166077.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At3g23020-like [Cucumis sativus]
          Length = 859

 Score =  110 bits (274), Expect = 2e-22
 Identities = 50/82 (60%), Positives = 66/82 (80%)
 Frame = +3

Query: 42  INNTRSEPLVTFSSYTYNTLMDMYGKAGQLQDASDTFSRMLREGIVPTIVTFNTMIHICG 221
           + ++   P V+ S+YTYNTL+D YGKAGQL++AS TF  ML+EG+ PT VTFNTMIHICG
Sbjct: 304 VESSLHPPHVSLSTYTYNTLIDTYGKAGQLKEASTTFENMLKEGVSPTTVTFNTMIHICG 363

Query: 222 NNGKFEEVDSLIKKMEELRCLP 287
           N+G+ +EV  L++KMEEL+C P
Sbjct: 364 NHGQLKEVTFLMQKMEELQCPP 385