BLASTX nr result
ID: Coptis23_contig00018149
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Coptis23_contig00018149
(509 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_002519809.1| nuclear pore complex protein nup93, putative... 132 4e-39
ref|XP_002329719.1| predicted protein [Populus trichocarpa] gi|2... 128 1e-38
ref|XP_004136664.1| PREDICTED: uncharacterized protein At2g41620... 131 3e-38
ref|XP_003546115.1| PREDICTED: uncharacterized protein At2g41620... 126 3e-37
ref|XP_003543674.1| PREDICTED: uncharacterized protein At2g41620... 126 3e-37
>ref|XP_002519809.1| nuclear pore complex protein nup93, putative [Ricinus communis]
gi|223541048|gb|EEF42605.1| nuclear pore complex protein
nup93, putative [Ricinus communis]
Length = 710
Score = 132 bits (331), Expect(3) = 4e-39
Identities = 63/81 (77%), Positives = 70/81 (86%), Gaps = 1/81 (1%)
Frame = +1
Query: 1 IISGSRRQIDRLLGDIPTLFNTIEDFLWFKLATVRDSQGGGS-FVLDEGMVPYTLDDLQV 177
++SGSRRQIDRLL D+PTLFNTIEDFLWFKL+ VRD GG S VL+EG PY+L+DLQ
Sbjct: 396 LVSGSRRQIDRLLRDLPTLFNTIEDFLWFKLSAVRDFHGGTSAVVLNEGSAPYSLEDLQA 455
Query: 178 YLRKFEPSYYTKNGKDPLVYP 240
YL KFEPSYYTKNGKDPLVYP
Sbjct: 456 YLNKFEPSYYTKNGKDPLVYP 476
Score = 48.5 bits (114), Expect(3) = 4e-39
Identities = 22/32 (68%), Positives = 28/32 (87%)
Frame = +2
Query: 287 SKETRDEGFDIDSVHISIVLADYGVLMEGAGS 382
SKE DEG+DID+VH++IVLAD+GVL E AG+
Sbjct: 493 SKEVADEGYDIDAVHMAIVLADHGVLSEVAGA 524
Score = 26.6 bits (57), Expect(3) = 4e-39
Identities = 10/14 (71%), Positives = 12/14 (85%)
Frame = +3
Query: 426 LIRQYGAAYLRSGN 467
+IRQYG+ YLR GN
Sbjct: 540 IIRQYGSTYLRRGN 553
>ref|XP_002329719.1| predicted protein [Populus trichocarpa] gi|222870627|gb|EEF07758.1|
predicted protein [Populus trichocarpa]
Length = 863
Score = 128 bits (321), Expect(3) = 1e-38
Identities = 61/81 (75%), Positives = 70/81 (86%), Gaps = 1/81 (1%)
Frame = +1
Query: 1 IISGSRRQIDRLLGDIPTLFNTIEDFLWFKLATVRDSQGG-GSFVLDEGMVPYTLDDLQV 177
I+SGSRRQID LL D+PTLFNTIEDFLWFKL+ V++ GG S VL+E +VPY+L+DLQ
Sbjct: 427 IVSGSRRQIDHLLRDLPTLFNTIEDFLWFKLSAVQEYHGGTSSQVLNESLVPYSLEDLQA 486
Query: 178 YLRKFEPSYYTKNGKDPLVYP 240
YL KFEPSYYTKNGKDPLVYP
Sbjct: 487 YLNKFEPSYYTKNGKDPLVYP 507
Score = 48.5 bits (114), Expect(3) = 1e-38
Identities = 21/32 (65%), Positives = 28/32 (87%)
Frame = +2
Query: 287 SKETRDEGFDIDSVHISIVLADYGVLMEGAGS 382
SKE DEG++I++VH+SI LAD+GVL EGAG+
Sbjct: 524 SKEAADEGYNINAVHVSIALADHGVLTEGAGA 555
Score = 28.5 bits (62), Expect(3) = 1e-38
Identities = 11/20 (55%), Positives = 14/20 (70%)
Frame = +3
Query: 408 FCRSCDLIRQYGAAYLRSGN 467
+ +IRQYG+AYLR GN
Sbjct: 565 YAEVASIIRQYGSAYLRHGN 584
>ref|XP_004136664.1| PREDICTED: uncharacterized protein At2g41620-like [Cucumis sativus]
gi|449494745|ref|XP_004159635.1| PREDICTED:
uncharacterized protein At2g41620-like [Cucumis sativus]
Length = 863
Score = 131 bits (329), Expect(3) = 3e-38
Identities = 64/81 (79%), Positives = 69/81 (85%), Gaps = 1/81 (1%)
Frame = +1
Query: 1 IISGSRRQIDRLLGDIPTLFNTIEDFLWFKLATVRDSQG-GGSFVLDEGMVPYTLDDLQV 177
IISGSRRQIDRLL D+P LFNTIEDFLWF+L+ VR+ G S VL+EG VPYTLDDLQ
Sbjct: 427 IISGSRRQIDRLLRDLPMLFNTIEDFLWFQLSAVRNGHGESSSIVLNEGSVPYTLDDLQF 486
Query: 178 YLRKFEPSYYTKNGKDPLVYP 240
YL KFEPSYYTKNGKDPLVYP
Sbjct: 487 YLNKFEPSYYTKNGKDPLVYP 507
Score = 46.6 bits (109), Expect(3) = 3e-38
Identities = 22/32 (68%), Positives = 26/32 (81%)
Frame = +2
Query: 287 SKETRDEGFDIDSVHISIVLADYGVLMEGAGS 382
SKET +EG +ID+ HISIVLAD GVL EG G+
Sbjct: 524 SKETGEEGLNIDAAHISIVLADNGVLSEGTGA 555
Score = 26.6 bits (57), Expect(3) = 3e-38
Identities = 10/20 (50%), Positives = 13/20 (65%)
Frame = +3
Query: 408 FCRSCDLIRQYGAAYLRSGN 467
+ +IRQYG+ YLR GN
Sbjct: 565 YAEVASIIRQYGSLYLRMGN 584
>ref|XP_003546115.1| PREDICTED: uncharacterized protein At2g41620-like [Glycine max]
Length = 861
Score = 126 bits (316), Expect(3) = 3e-37
Identities = 61/81 (75%), Positives = 68/81 (83%), Gaps = 1/81 (1%)
Frame = +1
Query: 1 IISGSRRQIDRLLGDIPTLFNTIEDFLWFKLATVRDSQGG-GSFVLDEGMVPYTLDDLQV 177
IISGSRR IDRLL D P+LF+TIEDFLWFKL+ VRD G S VL +G++PY+LDDLQ
Sbjct: 425 IISGSRRHIDRLLRDQPSLFSTIEDFLWFKLSAVRDCPSGPSSIVLSDGLIPYSLDDLQS 484
Query: 178 YLRKFEPSYYTKNGKDPLVYP 240
YL KFEPSYYTKNGKDPLVYP
Sbjct: 485 YLNKFEPSYYTKNGKDPLVYP 505
Score = 50.8 bits (120), Expect(3) = 3e-37
Identities = 23/32 (71%), Positives = 28/32 (87%)
Frame = +2
Query: 287 SKETRDEGFDIDSVHISIVLADYGVLMEGAGS 382
SKE DEG++ID+ H+SIVLAD+GVL EGAGS
Sbjct: 522 SKEAGDEGYNIDAAHLSIVLADHGVLSEGAGS 553
Score = 23.9 bits (50), Expect(3) = 3e-37
Identities = 9/14 (64%), Positives = 12/14 (85%)
Frame = +3
Query: 426 LIRQYGAAYLRSGN 467
+IRQYG+ YLR G+
Sbjct: 569 IIRQYGSMYLRLGD 582
>ref|XP_003543674.1| PREDICTED: uncharacterized protein At2g41620-like [Glycine max]
Length = 861
Score = 126 bits (316), Expect(3) = 3e-37
Identities = 61/81 (75%), Positives = 68/81 (83%), Gaps = 1/81 (1%)
Frame = +1
Query: 1 IISGSRRQIDRLLGDIPTLFNTIEDFLWFKLATVRDSQGG-GSFVLDEGMVPYTLDDLQV 177
IISGSRR IDRLL D P+LF+TIEDFLWFKL+ VRD G S VL +G++PY+LDDLQ
Sbjct: 425 IISGSRRHIDRLLRDQPSLFSTIEDFLWFKLSAVRDCPSGPSSIVLSDGLIPYSLDDLQS 484
Query: 178 YLRKFEPSYYTKNGKDPLVYP 240
YL KFEPSYYTKNGKDPLVYP
Sbjct: 485 YLNKFEPSYYTKNGKDPLVYP 505
Score = 50.8 bits (120), Expect(3) = 3e-37
Identities = 23/32 (71%), Positives = 28/32 (87%)
Frame = +2
Query: 287 SKETRDEGFDIDSVHISIVLADYGVLMEGAGS 382
SKE DEG++ID+ H+SIVLAD+GVL EGAGS
Sbjct: 522 SKEAGDEGYNIDAAHLSIVLADHGVLSEGAGS 553
Score = 23.9 bits (50), Expect(3) = 3e-37
Identities = 9/14 (64%), Positives = 12/14 (85%)
Frame = +3
Query: 426 LIRQYGAAYLRSGN 467
+IRQYG+ YLR G+
Sbjct: 569 IIRQYGSMYLRLGD 582