BLASTX nr result

ID: Coptis23_contig00018109 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00018109
         (447 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CAA63968.1| pom30 [Solanum tuberosum]                              94   4e-30
ref|XP_002525270.1| voltage-dependent anion-selective channel, p...    88   4e-30
gb|ABB16970.1| POM30-like protein [Solanum tuberosum]                  94   4e-30
ref|XP_002279650.2| PREDICTED: mitochondrial outer membrane prot...    96   1e-29
ref|XP_002306507.1| porin/voltage-dependent anion-selective chan...    94   2e-29

>emb|CAA63968.1| pom30 [Solanum tuberosum]
          Length = 276

 Score = 94.0 bits (232), Expect(2) = 4e-30
 Identities = 44/77 (57%), Positives = 54/77 (70%)
 Frame = -1

Query: 447 HSTLTTAANLNQSPVVDFSVTLGTANFAFGVESTYETKLGSLTKYNAGISVKSADYDASA 268
           H+  +TA  L QSP+VD SVTLGT  FA G E++YET  G L KY AGISV   D  A+ 
Sbjct: 114 HAAFSTAVGLKQSPIVDLSVTLGTPTFAIGAEASYETAEGKLAKYTAGISVTKPDSCAAI 173

Query: 267 VLADKGDTLKGSYVHYL 217
           +L DKGDT+K SY+H+L
Sbjct: 174 ILGDKGDTIKASYIHHL 190



 Score = 62.4 bits (150), Expect(2) = 4e-30
 Identities = 29/39 (74%), Positives = 33/39 (84%)
 Frame = -2

Query: 119 KRSAGVIEIARRFSTNENTITAGGSYAIDNLTVVKARLN 3
           K+SA V EI RRFSTNENT T GGSYA+DNLT+VK +LN
Sbjct: 194 KKSAAVGEITRRFSTNENTFTVGGSYAVDNLTIVKLKLN 232


>ref|XP_002525270.1| voltage-dependent anion-selective channel, putative [Ricinus
           communis] gi|223535428|gb|EEF37098.1| voltage-dependent
           anion-selective channel, putative [Ricinus communis]
          Length = 276

 Score = 88.2 bits (217), Expect(2) = 4e-30
 Identities = 42/77 (54%), Positives = 54/77 (70%)
 Frame = -1

Query: 447 HSTLTTAANLNQSPVVDFSVTLGTANFAFGVESTYETKLGSLTKYNAGISVKSADYDASA 268
           H+T TTA  L++SP VD S T+GT   AFG E++Y+T  G+ TKY +GISV   D  AS 
Sbjct: 114 HATFTTALALSKSPGVDVSATIGTPAIAFGAEASYDTTTGNFTKYTSGISVTKPDSCASI 173

Query: 267 VLADKGDTLKGSYVHYL 217
           +L  KGDT+K SY+HYL
Sbjct: 174 ILGHKGDTIKASYLHYL 190



 Score = 68.2 bits (165), Expect(2) = 4e-30
 Identities = 32/39 (82%), Positives = 37/39 (94%)
 Frame = -2

Query: 119 KRSAGVIEIARRFSTNENTITAGGSYAIDNLTVVKARLN 3
           K+SAGV EI+RRFSTNENTIT GGSYA+D+LTVVKA+LN
Sbjct: 194 KKSAGVAEISRRFSTNENTITVGGSYAVDHLTVVKAKLN 232


>gb|ABB16970.1| POM30-like protein [Solanum tuberosum]
          Length = 275

 Score = 94.0 bits (232), Expect(2) = 4e-30
 Identities = 44/77 (57%), Positives = 54/77 (70%)
 Frame = -1

Query: 447 HSTLTTAANLNQSPVVDFSVTLGTANFAFGVESTYETKLGSLTKYNAGISVKSADYDASA 268
           H+  +TA  L QSP+VD SVTLGT  FA G E++YET  G L KY AGISV   D  A+ 
Sbjct: 113 HAAFSTAVGLKQSPIVDLSVTLGTPTFAIGAEASYETAEGKLAKYTAGISVTKPDSCAAI 172

Query: 267 VLADKGDTLKGSYVHYL 217
           +L DKGDT+K SY+H+L
Sbjct: 173 ILGDKGDTIKASYIHHL 189



 Score = 62.4 bits (150), Expect(2) = 4e-30
 Identities = 29/39 (74%), Positives = 33/39 (84%)
 Frame = -2

Query: 119 KRSAGVIEIARRFSTNENTITAGGSYAIDNLTVVKARLN 3
           K+SA V EI RRFSTNENT T GGSYA+DNLT+VK +LN
Sbjct: 193 KKSAAVGEITRRFSTNENTFTVGGSYAVDNLTIVKLKLN 231


>ref|XP_002279650.2| PREDICTED: mitochondrial outer membrane protein porin of 36
           kDa-like [Vitis vinifera] gi|147772866|emb|CAN75907.1|
           hypothetical protein VITISV_001975 [Vitis vinifera]
           gi|296087320|emb|CBI33694.3| unnamed protein product
           [Vitis vinifera]
          Length = 276

 Score = 96.3 bits (238), Expect(2) = 1e-29
 Identities = 46/77 (59%), Positives = 56/77 (72%)
 Frame = -1

Query: 447 HSTLTTAANLNQSPVVDFSVTLGTANFAFGVESTYETKLGSLTKYNAGISVKSADYDASA 268
           H+TLTT+  LNQSP VD SVT+GT + AFG E+ Y+T  G  TKY AGISV   D  AS 
Sbjct: 114 HATLTTSVALNQSPAVDLSVTIGTPSIAFGAEAGYDTTSGCFTKYTAGISVAKPDSCASI 173

Query: 267 VLADKGDTLKGSYVHYL 217
           +L DKGDT++ SYVH+L
Sbjct: 174 ILGDKGDTIRASYVHHL 190



 Score = 58.5 bits (140), Expect(2) = 1e-29
 Identities = 29/39 (74%), Positives = 33/39 (84%)
 Frame = -2

Query: 119 KRSAGVIEIARRFSTNENTITAGGSYAIDNLTVVKARLN 3
           K+SA V EI+RRFSTN+NT T GGSYAID LT VKA+LN
Sbjct: 194 KKSAAVGEISRRFSTNDNTFTVGGSYAIDPLTNVKAKLN 232


>ref|XP_002306507.1| porin/voltage-dependent anion-selective channel protein [Populus
           trichocarpa] gi|222855956|gb|EEE93503.1|
           porin/voltage-dependent anion-selective channel protein
           [Populus trichocarpa]
          Length = 276

 Score = 94.0 bits (232), Expect(2) = 2e-29
 Identities = 44/77 (57%), Positives = 55/77 (71%)
 Frame = -1

Query: 447 HSTLTTAANLNQSPVVDFSVTLGTANFAFGVESTYETKLGSLTKYNAGISVKSADYDASA 268
           H+T TTAA LNQSP +D + T+GT   AFG E+ Y+T  GS TKY AGISV   D  AS 
Sbjct: 114 HATFTTAAALNQSPAIDVTATIGTPTIAFGAEAGYDTTSGSFTKYTAGISVTKPDSYASI 173

Query: 267 VLADKGDTLKGSYVHYL 217
           +L DKGD+++ SYVH+L
Sbjct: 174 ILGDKGDSIRASYVHHL 190



 Score = 60.1 bits (144), Expect(2) = 2e-29
 Identities = 29/41 (70%), Positives = 35/41 (85%)
 Frame = -2

Query: 125 LPKRSAGVIEIARRFSTNENTITAGGSYAIDNLTVVKARLN 3
           L K+SA V EI RRFS+NENT T GGS+A+D+LTVVKA+LN
Sbjct: 192 LLKKSAAVGEITRRFSSNENTFTVGGSFAVDHLTVVKAKLN 232


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