BLASTX nr result

ID: Coptis23_contig00018106 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00018106
         (506 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CBI29287.3| unnamed protein product [Vitis vinifera]              200   1e-49
ref|XP_002273831.1| PREDICTED: TVP38/TMEM64 family membrane prot...   200   1e-49
ref|XP_002297894.1| predicted protein [Populus trichocarpa] gi|2...   197   1e-48
ref|XP_004141157.1| PREDICTED: uncharacterized protein LOC101209...   194   6e-48
ref|XP_002512701.1| conserved hypothetical protein [Ricinus comm...   194   6e-48

>emb|CBI29287.3| unnamed protein product [Vitis vinifera]
          Length = 493

 Score =  200 bits (508), Expect = 1e-49
 Identities = 101/168 (60%), Positives = 120/168 (71%)
 Frame = -1

Query: 506 LFGFFTAVICVFCAKILGASLSFWIGRLVFRSSSSTMEWIQKNKYFHILAKGVERDGWKF 327
           LFGF  AV+CVF AK+LGASLSFWIGRL+FRSSS+ MEW Q NKYFH+L++GVERDGW+F
Sbjct: 252 LFGFLPAVLCVFSAKLLGASLSFWIGRLIFRSSSTAMEWAQGNKYFHLLSRGVERDGWRF 311

Query: 326 VLLARFSPMPSYVINYGLAATKVGFLVDFLLPSVIGCLPMIIQNTXXXXXXXXXXXXXXX 147
           VLLARFSP+PSYVINY LAATKVGF++DFLLPSVIGCLPMI+QNT               
Sbjct: 312 VLLARFSPIPSYVINYALAATKVGFILDFLLPSVIGCLPMILQNTSIGSLAGAAVATASG 371

Query: 146 SQKSQIFSYXXXXXXXXXXXXXXXXXXXXXSELSVDEPSSGKDILDTN 3
           SQKSQ++SY                     +++SV + SS +DI D N
Sbjct: 372 SQKSQVWSYVFPLLGIVSSILISLRIKKYSTDISVIQSSSSEDIHDCN 419


>ref|XP_002273831.1| PREDICTED: TVP38/TMEM64 family membrane protein slr0305 isoform 1
           [Vitis vinifera]
          Length = 264

 Score =  200 bits (508), Expect = 1e-49
 Identities = 101/168 (60%), Positives = 120/168 (71%)
 Frame = -1

Query: 506 LFGFFTAVICVFCAKILGASLSFWIGRLVFRSSSSTMEWIQKNKYFHILAKGVERDGWKF 327
           LFGF  AV+CVF AK+LGASLSFWIGRL+FRSSS+ MEW Q NKYFH+L++GVERDGW+F
Sbjct: 76  LFGFLPAVLCVFSAKLLGASLSFWIGRLIFRSSSTAMEWAQGNKYFHLLSRGVERDGWRF 135

Query: 326 VLLARFSPMPSYVINYGLAATKVGFLVDFLLPSVIGCLPMIIQNTXXXXXXXXXXXXXXX 147
           VLLARFSP+PSYVINY LAATKVGF++DFLLPSVIGCLPMI+QNT               
Sbjct: 136 VLLARFSPIPSYVINYALAATKVGFILDFLLPSVIGCLPMILQNTSIGSLAGAAVATASG 195

Query: 146 SQKSQIFSYXXXXXXXXXXXXXXXXXXXXXSELSVDEPSSGKDILDTN 3
           SQKSQ++SY                     +++SV + SS +DI D N
Sbjct: 196 SQKSQVWSYVFPLLGIVSSILISLRIKKYSTDISVIQSSSSEDIHDCN 243


>ref|XP_002297894.1| predicted protein [Populus trichocarpa] gi|222845152|gb|EEE82699.1|
           predicted protein [Populus trichocarpa]
          Length = 235

 Score =  197 bits (500), Expect = 1e-48
 Identities = 94/129 (72%), Positives = 108/129 (83%)
 Frame = -1

Query: 506 LFGFFTAVICVFCAKILGASLSFWIGRLVFRSSSSTMEWIQKNKYFHILAKGVERDGWKF 327
           LFGF  AV+CVF AK+LGASLSFWIGRLVFRSSSS MEW+Q NKYFH+L++GVE+DGWKF
Sbjct: 75  LFGFLPAVLCVFFAKVLGASLSFWIGRLVFRSSSSAMEWVQSNKYFHLLSRGVEKDGWKF 134

Query: 326 VLLARFSPMPSYVINYGLAATKVGFLVDFLLPSVIGCLPMIIQNTXXXXXXXXXXXXXXX 147
           VLLARFSPMPSY+INY LAATKVGF+VDFLLP+V+GCLPMI+QNT               
Sbjct: 135 VLLARFSPMPSYLINYALAATKVGFMVDFLLPTVVGCLPMILQNTSIGSLAGAAVASASG 194

Query: 146 SQKSQIFSY 120
           S+KSQI+SY
Sbjct: 195 SKKSQIWSY 203


>ref|XP_004141157.1| PREDICTED: uncharacterized protein LOC101209858 [Cucumis sativus]
           gi|449528000|ref|XP_004170995.1| PREDICTED:
           uncharacterized protein LOC101229874 [Cucumis sativus]
          Length = 260

 Score =  194 bits (493), Expect = 6e-48
 Identities = 93/129 (72%), Positives = 108/129 (83%)
 Frame = -1

Query: 506 LFGFFTAVICVFCAKILGASLSFWIGRLVFRSSSSTMEWIQKNKYFHILAKGVERDGWKF 327
           LFGFF AVICVF AK+LGASLSFWIGRL+F++SSS MEW Q+NKYFH+L++GVE+DGWKF
Sbjct: 81  LFGFFPAVICVFFAKVLGASLSFWIGRLLFKNSSSAMEWAQRNKYFHLLSRGVEQDGWKF 140

Query: 326 VLLARFSPMPSYVINYGLAATKVGFLVDFLLPSVIGCLPMIIQNTXXXXXXXXXXXXXXX 147
           VLLARFSP+PSYVINY LAATKVGF +DFLLP+VIGC+PMI+QNT               
Sbjct: 141 VLLARFSPIPSYVINYALAATKVGFFLDFLLPTVIGCMPMILQNTSIGSLAGAAVASASG 200

Query: 146 SQKSQIFSY 120
           SQKSQI+SY
Sbjct: 201 SQKSQIWSY 209


>ref|XP_002512701.1| conserved hypothetical protein [Ricinus communis]
           gi|223548662|gb|EEF50153.1| conserved hypothetical
           protein [Ricinus communis]
          Length = 264

 Score =  194 bits (493), Expect = 6e-48
 Identities = 94/129 (72%), Positives = 107/129 (82%)
 Frame = -1

Query: 506 LFGFFTAVICVFCAKILGASLSFWIGRLVFRSSSSTMEWIQKNKYFHILAKGVERDGWKF 327
           LFGF  AV+CVF AK+LGASLSFWIGRLVFRSSSS MEW Q+NKYFH+L+KGVE+DGW+F
Sbjct: 76  LFGFMPAVLCVFSAKLLGASLSFWIGRLVFRSSSSAMEWAQRNKYFHLLSKGVEQDGWRF 135

Query: 326 VLLARFSPMPSYVINYGLAATKVGFLVDFLLPSVIGCLPMIIQNTXXXXXXXXXXXXXXX 147
           VLLARFSPMPSYVINY LAATKV FLVDFLLP++IGCLPMI+QNT               
Sbjct: 136 VLLARFSPMPSYVINYALAATKVEFLVDFLLPTIIGCLPMILQNTSIGSLAGAAVASTSG 195

Query: 146 SQKSQIFSY 120
           SQKS+++SY
Sbjct: 196 SQKSKVWSY 204


Top