BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00018062
         (570 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002515072.1| pentatricopeptide repeat-containing protein,...    57   2e-06
ref|XP_003534128.1| PREDICTED: pentatricopeptide repeat-containi...    57   2e-06
ref|XP_002268415.1| PREDICTED: pentatricopeptide repeat-containi...    57   3e-06
emb|CBI38708.3| unnamed protein product [Vitis vinifera]               57   3e-06
gb|AFK47097.1| unknown [Medicago truncatula]                           56   5e-06

>ref|XP_002515072.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223545552|gb|EEF47056.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 504

 Score = 57.4 bits (137), Expect = 2e-06
 Identities = 27/52 (51%), Positives = 34/52 (65%)
 Frame = -1

Query: 570 SEGRSYEAVLWLEEMASQGNWPEVSVWNSLVQVVCSESIEFYASAEMLRRLT 415
           S GR YEA +WLEEM S    PE+SVWNSLV  +CS + +  A  E  +RL+
Sbjct: 450 SIGRQYEATMWLEEMISLDEAPELSVWNSLVTCLCSNTADIDACCETFKRLS 501


>ref|XP_003534128.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g05600-like [Glycine max]
          Length = 502

 Score = 57.0 bits (136), Expect = 2e-06
 Identities = 28/51 (54%), Positives = 35/51 (68%)
 Frame = -1

Query: 570 SEGRSYEAVLWLEEMASQGNWPEVSVWNSLVQVVCSESIEFYASAEMLRRL 418
           S GR YEAV+WLE+M SQG  PE+SVWNSL  + C+ S +   S+E   RL
Sbjct: 450 SIGRQYEAVMWLEDMISQGKLPEISVWNSLASLFCN-SEKIKVSSETFSRL 499


>ref|XP_002268415.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g05600-like [Vitis vinifera]
          Length = 503

 Score = 56.6 bits (135), Expect = 3e-06
 Identities = 27/49 (55%), Positives = 32/49 (65%)
 Frame = -1

Query: 564 GRSYEAVLWLEEMASQGNWPEVSVWNSLVQVVCSESIEFYASAEMLRRL 418
           GR Y+AV+WLEEM  QG  P VSVW+SLV  VCS   E    +E L +L
Sbjct: 452 GRQYDAVIWLEEMVVQGKLPAVSVWDSLVASVCSNMTEAGVCSETLEKL 500


>emb|CBI38708.3| unnamed protein product [Vitis vinifera]
          Length = 466

 Score = 56.6 bits (135), Expect = 3e-06
 Identities = 27/49 (55%), Positives = 32/49 (65%)
 Frame = -1

Query: 564 GRSYEAVLWLEEMASQGNWPEVSVWNSLVQVVCSESIEFYASAEMLRRL 418
           GR Y+AV+WLEEM  QG  P VSVW+SLV  VCS   E    +E L +L
Sbjct: 415 GRQYDAVIWLEEMVVQGKLPAVSVWDSLVASVCSNMTEAGVCSETLEKL 463


>gb|AFK47097.1| unknown [Medicago truncatula]
          Length = 378

 Score = 55.8 bits (133), Expect = 5e-06
 Identities = 27/51 (52%), Positives = 33/51 (64%)
 Frame = -1

Query: 570 SEGRSYEAVLWLEEMASQGNWPEVSVWNSLVQVVCSESIEFYASAEMLRRL 418
           S GR YEAV+WLE+M SQG  PE+SVWNSL    C+  +    SAE   R+
Sbjct: 326 SLGRQYEAVMWLEDMISQGKLPEISVWNSLASSSCNSGM-MKVSAETFNRI 375