BLASTX nr result
ID: Coptis23_contig00018044
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Coptis23_contig00018044
(2501 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_002284337.2| PREDICTED: uncharacterized RNA-binding prote... 380 e-103
ref|XP_003634360.1| PREDICTED: uncharacterized RNA-binding prote... 380 e-102
ref|XP_002510266.1| nuclear acid binding protein, putative [Rici... 372 e-100
ref|XP_002327112.1| predicted protein [Populus trichocarpa] gi|2... 370 1e-99
emb|CBI19566.3| unnamed protein product [Vitis vinifera] 366 2e-98
>ref|XP_002284337.2| PREDICTED: uncharacterized RNA-binding protein C23E6.01c-like isoform
1 [Vitis vinifera]
Length = 409
Score = 380 bits (976), Expect = e-103
Identities = 195/339 (57%), Positives = 233/339 (68%)
Frame = +3
Query: 108 DKKTLVVEDLQSWMDEGYLKTCFAHTTQESFCTKVFRNLETGESEGYGVINFCTHADAEK 287
D +T+ V DL +WMDE YL +CFA T E KV RN +TG SEGYG + F +HA AEK
Sbjct: 82 DNRTIWVGDLHNWMDENYLHSCFA-ATGELASMKVIRNKQTGSSEGYGFVEFFSHAAAEK 140
Query: 288 VFQTYNGITMPQTEQPFQLNWASSSVCDKSSDLDSEYSLFVGNLAPDVTSTLLGELFLRK 467
V Q Y G+ MP T+QPF+LNWA+ S+ DK SD + S+FVG+LA DV+ +LL E F K
Sbjct: 141 VLQGYAGVLMPNTDQPFRLNWATFSMGDKRSDNGPDLSIFVGDLASDVSDSLLHETFAGK 200
Query: 468 YPSVTEANVVFDENTGRSKSIGFVTFSDDNERSQARTELNGIYFHGRPMHTGFPNRRRXX 647
YPSV A VVFD NTGRSK GFV F D+NERSQA TE+NG+Y RPM G R+
Sbjct: 201 YPSVKAAKVVFDANTGRSKGYGFVRFGDENERSQAMTEMNGVYCSSRPMRIGAATPRKSS 260
Query: 648 XXXXXXXXXXXXXXXXAFAQKVQCDEHFINTTIYVGGLDPSVSLEDLRQTFSQYGETTSV 827
++ VQ D +NTTI+VGGLDP+VS EDLRQ FSQYGE SV
Sbjct: 261 GYQQQ------------YSSHVQSDGDSMNTTIFVGGLDPNVSDEDLRQPFSQYGEIVSV 308
Query: 828 RIPGGKGFGFVKFANRSNAEEALQKLNRTVIGKQTVYLSWCKNPANKQLTVNRGNQWSGT 1007
+IP GKG GFV+FANR+NAE+ALQKLN TVIGKQTV LSW +NPANKQ+ + GNQWSG
Sbjct: 309 KIPVGKGCGFVQFANRNNAEDALQKLNGTVIGKQTVRLSWGRNPANKQMRADFGNQWSGA 368
Query: 1008 YYGSKISEGYGYAATPLPDSSTPGGAYGTYPVYGNHQQE 1124
YYG ++ +GYGYA P D + AYG YPVYGNHQQ+
Sbjct: 369 YYGGQVYDGYGYALPPPHDPTMYAAAYGAYPVYGNHQQQ 407
>ref|XP_003634360.1| PREDICTED: uncharacterized RNA-binding protein C23E6.01c-like isoform
2 [Vitis vinifera]
Length = 418
Score = 380 bits (975), Expect = e-102
Identities = 196/339 (57%), Positives = 232/339 (68%)
Frame = +3
Query: 108 DKKTLVVEDLQSWMDEGYLKTCFAHTTQESFCTKVFRNLETGESEGYGVINFCTHADAEK 287
D +T+ V DL +WMDE YL +CFA T E KV RN +TG SEGYG + F +HA AEK
Sbjct: 82 DNRTIWVGDLHNWMDENYLHSCFA-ATGELASMKVIRNKQTGSSEGYGFVEFFSHAAAEK 140
Query: 288 VFQTYNGITMPQTEQPFQLNWASSSVCDKSSDLDSEYSLFVGNLAPDVTSTLLGELFLRK 467
V Q Y G+ MP T+QPF+LNWA+ S+ DK SD + S+FVG+LA DV+ +LL E F K
Sbjct: 141 VLQGYAGVLMPNTDQPFRLNWATFSMGDKRSDNGPDLSIFVGDLASDVSDSLLHETFAGK 200
Query: 468 YPSVTEANVVFDENTGRSKSIGFVTFSDDNERSQARTELNGIYFHGRPMHTGFPNRRRXX 647
YPSV A VVFD NTGRSK GFV F D+NERSQA TE+NG+Y RPM G R+
Sbjct: 201 YPSVKAAKVVFDANTGRSKGYGFVRFGDENERSQAMTEMNGVYCSSRPMRIGAATPRKSS 260
Query: 648 XXXXXXXXXXXXXXXXAFAQKVQCDEHFINTTIYVGGLDPSVSLEDLRQTFSQYGETTSV 827
A VQ D +NTTI+VGGLDP+VS EDLRQ FSQYGE SV
Sbjct: 261 GYQQQYSSHGGYASNGA---SVQSDGDSMNTTIFVGGLDPNVSDEDLRQPFSQYGEIVSV 317
Query: 828 RIPGGKGFGFVKFANRSNAEEALQKLNRTVIGKQTVYLSWCKNPANKQLTVNRGNQWSGT 1007
+IP GKG GFV+FANR+NAE+ALQKLN TVIGKQTV LSW +NPANKQ+ + GNQWSG
Sbjct: 318 KIPVGKGCGFVQFANRNNAEDALQKLNGTVIGKQTVRLSWGRNPANKQMRADFGNQWSGA 377
Query: 1008 YYGSKISEGYGYAATPLPDSSTPGGAYGTYPVYGNHQQE 1124
YYG ++ +GYGYA P D + AYG YPVYGNHQQ+
Sbjct: 378 YYGGQVYDGYGYALPPPHDPTMYAAAYGAYPVYGNHQQQ 416
>ref|XP_002510266.1| nuclear acid binding protein, putative [Ricinus communis]
gi|223550967|gb|EEF52453.1| nuclear acid binding protein,
putative [Ricinus communis]
Length = 443
Score = 372 bits (955), Expect = e-100
Identities = 198/345 (57%), Positives = 230/345 (66%), Gaps = 1/345 (0%)
Frame = +3
Query: 93 GFGDEDKKTLVVEDLQSWMDEGYLKTCFAHTTQESFCTKVFRNLETGESEGYGVINFCTH 272
G G + +T+ + DL WMDE YL TCFA +T E KV RN +TG SEGYG + F TH
Sbjct: 102 GGGGGENRTVWIGDLHHWMDENYLHTCFA-STGEIVSIKVIRNKQTGLSEGYGFVEFYTH 160
Query: 273 ADAEKVFQTYNGITMPQTEQPFQLNWASSSVCDKSSDLDSEYSLFVGNLAPDVTSTLLGE 452
A AEKV Q Y GI MP TEQPF+LNWA+ S DK SD + S+FVG+LA DVT +LL E
Sbjct: 161 ATAEKVLQNYAGILMPNTEQPFRLNWATFSTGDKRSDNAPDLSIFVGDLAADVTDSLLHE 220
Query: 453 LFLRKYPSVTEANVVFDENTGRSKSIGFVTFSDDNERSQARTELNGIYFHGRPMHTGFPN 632
F+ +YPSV A VVFD NTGRSK GFV F DDNER+QA TE+NG+Y R M G
Sbjct: 221 TFVSRYPSVKAAKVVFDANTGRSKGYGFVRFGDDNERTQAMTEMNGVYCSSRAMRIGAAT 280
Query: 633 RRRXXXXXXXXXXXXXXXXXXAFAQKVQCDEHFINTTIYVGGLDPSVSLEDLRQTFSQYG 812
R+ AF Q D NTTI+VGGLDP+V+ EDL+Q FSQYG
Sbjct: 281 PRKSTGYQHQGGYVSNGASGQAF----QADGDSTNTTIFVGGLDPNVTDEDLKQPFSQYG 336
Query: 813 ETTSVRIPGGKGFGFVKFANRSNAEEALQKLNRTVIGKQTVYLSWCKNPANK-QLTVNRG 989
E SV+IP GKG GFV+FA+RSNAEEALQKLN TVIGKQTV LSW +NPANK QL + G
Sbjct: 337 EIVSVKIPVGKGCGFVQFASRSNAEEALQKLNGTVIGKQTVRLSWGRNPANKQQLRSDFG 396
Query: 990 NQWSGTYYGSKISEGYGYAATPLPDSSTPGGAYGTYPVYGNHQQE 1124
NQW G YYG +I +GYGYA P D S YG YPVYG+HQQ+
Sbjct: 397 NQWGGAYYGGQIYDGYGYALPPPHDPSMYAAPYGAYPVYGSHQQQ 441
>ref|XP_002327112.1| predicted protein [Populus trichocarpa] gi|222835427|gb|EEE73862.1|
predicted protein [Populus trichocarpa]
Length = 429
Score = 370 bits (949), Expect = 1e-99
Identities = 194/345 (56%), Positives = 229/345 (66%), Gaps = 3/345 (0%)
Frame = +3
Query: 99 GDEDKKTLVVEDLQSWMDEGYLKTCFAHTTQESFCTKVFRNLETGESEGYGVINFCTHAD 278
G + KT+ + DL WMDE YL +CF +T E KV RN +TG SEGYG + F THA
Sbjct: 88 GSGENKTIWIGDLHHWMDENYLHSCFV-STGEIASIKVIRNKQTGLSEGYGFVEFLTHAT 146
Query: 279 AEKVFQTYNGITMPQTEQPFQLNWASSSVCDKSSDLDSEYSLFVGNLAPDVTSTLLGELF 458
AEKV Q Y GI MP TEQPF+LNWA+ S DK SD + S+FVG+LA DVT +LL E F
Sbjct: 147 AEKVLQNYGGILMPNTEQPFRLNWATFSTGDKRSDNAPDLSIFVGDLAADVTDSLLQETF 206
Query: 459 LRKYPSVTEANVVFDENTGRSKSIGFVTFSDDNERSQARTELNGIYFHGRPMHTGFPNRR 638
+ KYPSV A VVFD NTGRSK GFV F DD+ER+QA TE+NG+Y RPM G R
Sbjct: 207 VSKYPSVKAAKVVFDANTGRSKGYGFVRFGDDSERTQAMTEMNGVYCSSRPMRIGAATPR 266
Query: 639 RXXXXXXXXXXXXXXXXXXAFAQKVQCDEHFINTTIYVGGLDPSVSLEDLRQTFSQYGET 818
+ A AQ Q D NTTI+VGGLDP+V+ EDL+Q FSQYGE
Sbjct: 267 K----SSGYQQQGGYGSNGASAQGFQSDGDSNNTTIFVGGLDPNVTDEDLKQPFSQYGEI 322
Query: 819 TSVRIPGGKGFGFVKFANRSNAEEALQKLNRTVIGKQTVYLSWCKNPANKQLTVNRGNQW 998
SV+IP GKG GFV+FANR NAEEALQKLN TVIGKQTV LSW +NPANKQ + G+ W
Sbjct: 323 VSVKIPVGKGCGFVQFANRDNAEEALQKLNGTVIGKQTVRLSWGRNPANKQFRADFGSPW 382
Query: 999 SGTYYGSKISEGYGYAATPLPDSS---TPGGAYGTYPVYGNHQQE 1124
+G YYG ++ +GYGYA P D S AYG YP+YG+HQQ+
Sbjct: 383 NGAYYGGQVYDGYGYALPPPHDPSMYAAAAAAYGAYPIYGSHQQQ 427
>emb|CBI19566.3| unnamed protein product [Vitis vinifera]
Length = 324
Score = 366 bits (939), Expect = 2e-98
Identities = 190/326 (58%), Positives = 223/326 (68%)
Frame = +3
Query: 147 MDEGYLKTCFAHTTQESFCTKVFRNLETGESEGYGVINFCTHADAEKVFQTYNGITMPQT 326
MDE YL +CFA T E KV RN +TG SEGYG + F +HA AEKV Q Y G+ MP T
Sbjct: 1 MDENYLHSCFA-ATGELASMKVIRNKQTGSSEGYGFVEFFSHAAAEKVLQGYAGVLMPNT 59
Query: 327 EQPFQLNWASSSVCDKSSDLDSEYSLFVGNLAPDVTSTLLGELFLRKYPSVTEANVVFDE 506
+QPF+LNWA+ S+ DK SD + S+FVG+LA DV+ +LL E F KYPSV A VVFD
Sbjct: 60 DQPFRLNWATFSMGDKRSDNGPDLSIFVGDLASDVSDSLLHETFAGKYPSVKAAKVVFDA 119
Query: 507 NTGRSKSIGFVTFSDDNERSQARTELNGIYFHGRPMHTGFPNRRRXXXXXXXXXXXXXXX 686
NTGRSK GFV F D+NERSQA TE+NG+Y RPM G R+
Sbjct: 120 NTGRSKGYGFVRFGDENERSQAMTEMNGVYCSSRPMRIGAATPRKSSGYQQQYSSHGGYA 179
Query: 687 XXXAFAQKVQCDEHFINTTIYVGGLDPSVSLEDLRQTFSQYGETTSVRIPGGKGFGFVKF 866
A VQ D +NTTI+VGGLDP+VS EDLRQ FSQYGE SV+IP GKG GFV+F
Sbjct: 180 SNGA---SVQSDGDSMNTTIFVGGLDPNVSDEDLRQPFSQYGEIVSVKIPVGKGCGFVQF 236
Query: 867 ANRSNAEEALQKLNRTVIGKQTVYLSWCKNPANKQLTVNRGNQWSGTYYGSKISEGYGYA 1046
ANR+NAE+ALQKLN TVIGKQTV LSW +NPANKQ+ + GNQWSG YYG ++ +GYGYA
Sbjct: 237 ANRNNAEDALQKLNGTVIGKQTVRLSWGRNPANKQMRADFGNQWSGAYYGGQVYDGYGYA 296
Query: 1047 ATPLPDSSTPGGAYGTYPVYGNHQQE 1124
P D + AYG YPVYGNHQQ+
Sbjct: 297 LPPPHDPTMYAAAYGAYPVYGNHQQQ 322