BLASTX nr result
ID: Coptis23_contig00017982
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Coptis23_contig00017982
(1999 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_002273715.1| PREDICTED: DEAD-box ATP-dependent RNA helica... 754 0.0
ref|XP_002520785.1| dead box ATP-dependent RNA helicase, putativ... 742 0.0
ref|XP_002312182.1| predicted protein [Populus trichocarpa] gi|2... 739 0.0
ref|XP_003552218.1| PREDICTED: DEAD-box ATP-dependent RNA helica... 732 0.0
ref|XP_003538481.1| PREDICTED: DEAD-box ATP-dependent RNA helica... 730 0.0
>ref|XP_002273715.1| PREDICTED: DEAD-box ATP-dependent RNA helicase 18-like [Vitis
vinifera]
Length = 595
Score = 754 bits (1947), Expect = 0.0
Identities = 382/529 (72%), Positives = 439/529 (82%), Gaps = 2/529 (0%)
Frame = +1
Query: 1 GSGKTLAFVVPLVEILRRSSETPKPHKVMGVILSPTRELSTQIYHVAQTFVETLSNVRSM 180
GSGKTLAFVVPLVEILRR+S PKPH+V+GVILSPTRELS+QIY+VAQ F+ TL NV+S+
Sbjct: 67 GSGKTLAFVVPLVEILRRASSAPKPHQVLGVILSPTRELSSQIYNVAQPFISTLPNVKSV 126
Query: 181 LLVGGTSLRADMKSIEEEGANLLIGTPGRIYDIMERMDILDFRNLEILILDEADRLLEMG 360
LLVGG +++D+K IEEEGANLLIGTPGR+YDIMERMD+LDFRNLEILILDEADRLL+MG
Sbjct: 127 LLVGGVEVKSDLKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLEILILDEADRLLDMG 186
Query: 361 FQKQINSIISHLPKLRRTGLFSATQTEAVEELSKAGLRNPVRVEVRTEMKMLD--ISSKQ 534
FQKQI SII+ LPKLRRTGLFSATQTEAVEELSKAGLRNPVRVEVR E K L+ +SS+Q
Sbjct: 187 FQKQITSIIARLPKLRRTGLFSATQTEAVEELSKAGLRNPVRVEVRAEAKSLNDSVSSQQ 246
Query: 535 LASSKTPLGLHNEYLKCEAEKKSSQLVDFITKHVNEKMIIYFMTCACVDYWWVVLQQLAA 714
LASSKTP GL+ EYL+CEA+KK SQLVD + K+ ++K+IIYFMTCACVDYW V+L +L+
Sbjct: 247 LASSKTPSGLNIEYLECEADKKPSQLVDLLIKNKSKKIIIYFMTCACVDYWGVILPRLSV 306
Query: 715 LKKCPIISLHGKMKQIGREKALASFTELSSGVLLCTDVAARGLDIPGIDWIVQYDPPQDP 894
LK +I LHGKMKQ REKALASFT LSSG+LLCTDVAARGLDIPG+D IVQYDPPQDP
Sbjct: 307 LKGFSLIPLHGKMKQTAREKALASFTSLSSGILLCTDVAARGLDIPGVDCIVQYDPPQDP 366
Query: 895 NVFVHRVGRTARFGRSGRAILFLLPKEEAYAEFLRIRNVPLEERECCNDVPDIVPQIRSA 1074
NVF+HRVGRTAR GR G A++FLLPKEEAY EFLRIR VPL+ C +D D+VPQIRSA
Sbjct: 367 NVFIHRVGRTARMGRQGSAVVFLLPKEEAYVEFLRIRRVPLQGMTCSSDASDVVPQIRSA 426
Query: 1075 AKEDRDVMEKGLKAFVSFIRAYKEHHCPYIFRLKDLEIGKLAMGYGLLQLPAIPDVKQYK 1254
AK+DRDVMEKGL+AFVSF+RAYKEHHC YIFR K+LEIGKLAMGYGLLQLP++P+VK +
Sbjct: 427 AKKDRDVMEKGLRAFVSFVRAYKEHHCSYIFRWKELEIGKLAMGYGLLQLPSMPEVKHHS 486
Query: 1255 LSTDGFVKDEDVNVADIKFRDKLREKQRXXXXXXXXXXXXXXXXXXXWKAKLNATSTVMR 1434
LST+GF ED+N +IK++DK REKQR + TVMR
Sbjct: 487 LSTEGFTPVEDINFEEIKYKDKSREKQRKKNLQAKKAVQDQEPKPQKPNKTPHTAPTVMR 546
Query: 1435 KKTAKQRRAAQTVEDADELDRDYRXXXXXXXGTIDESEFAKLTGTEELI 1581
KKTAKQRR AQT+ED D+L R+YR GTIDESEFAKLTGTEEL+
Sbjct: 547 KKTAKQRRTAQTIEDEDDLAREYRLLKKLKKGTIDESEFAKLTGTEELL 595
>ref|XP_002520785.1| dead box ATP-dependent RNA helicase, putative [Ricinus communis]
gi|223539916|gb|EEF41494.1| dead box ATP-dependent RNA
helicase, putative [Ricinus communis]
Length = 592
Score = 742 bits (1915), Expect = 0.0
Identities = 380/528 (71%), Positives = 434/528 (82%), Gaps = 1/528 (0%)
Frame = +1
Query: 1 GSGKTLAFVVPLVEILRRSSETPKPHKVMGVILSPTRELSTQIYHVAQTFVETLSNVRSM 180
GSGKTLAFVVPLVEILRR S K H+VMG+ILSPTRELS+QIY+VAQ F+ETLSNV+SM
Sbjct: 65 GSGKTLAFVVPLVEILRRLSSPIKLHQVMGIILSPTRELSSQIYNVAQPFIETLSNVKSM 124
Query: 181 LLVGGTSLRADMKSIEEEGANLLIGTPGRIYDIMERMDILDFRNLEILILDEADRLLEMG 360
LLVGG ++AD+K IEEEGAN+LIGTPGR++DIMER+DILDFRNLE+LILDEADRLL+MG
Sbjct: 125 LLVGGVDVKADVKKIEEEGANILIGTPGRLFDIMERVDILDFRNLEVLILDEADRLLDMG 184
Query: 361 FQKQINSIISHLPKLRRTGLFSATQTEAVEELSKAGLRNPVRVEVRTEMKMLDIS-SKQL 537
FQKQI SIIS LPKLRRTGLFSATQTEAVEEL+KAGLRNPVRVEVR + K L+ S S QL
Sbjct: 185 FQKQITSIISRLPKLRRTGLFSATQTEAVEELAKAGLRNPVRVEVRAQTKSLNESASSQL 244
Query: 538 ASSKTPLGLHNEYLKCEAEKKSSQLVDFITKHVNEKMIIYFMTCACVDYWWVVLQQLAAL 717
+SSKTP GL EYL+CEA+ K S LV + K+ ++K+I+YFMTCACVDYW VVL +L AL
Sbjct: 245 SSSKTPSGLQLEYLECEADMKPSHLVSLLNKNKSKKIIVYFMTCACVDYWGVVLPRLTAL 304
Query: 718 KKCPIISLHGKMKQIGREKALASFTELSSGVLLCTDVAARGLDIPGIDWIVQYDPPQDPN 897
K +I LHGKMKQ R+KALASFT L+SG+LLCTDVAARGLDIPG+D IVQYDPPQDPN
Sbjct: 305 KDFSLIPLHGKMKQTARDKALASFTSLTSGILLCTDVAARGLDIPGVDCIVQYDPPQDPN 364
Query: 898 VFVHRVGRTARFGRSGRAILFLLPKEEAYAEFLRIRNVPLEERECCNDVPDIVPQIRSAA 1077
VF+HRVGRTAR GR G AI+FLLPKEEAY EFLRIR VPL+E + +D PD+VPQIRSAA
Sbjct: 365 VFIHRVGRTARLGRQGSAIVFLLPKEEAYVEFLRIRRVPLQEMKITDDAPDVVPQIRSAA 424
Query: 1078 KEDRDVMEKGLKAFVSFIRAYKEHHCPYIFRLKDLEIGKLAMGYGLLQLPAIPDVKQYKL 1257
K+DRDVMEKGL+AFVSFIRAYKEHHC YIFR K+LE+GKL MGYGLLQLP++P+VK + L
Sbjct: 425 KKDRDVMEKGLRAFVSFIRAYKEHHCSYIFRWKELEVGKLGMGYGLLQLPSMPEVKHHSL 484
Query: 1258 STDGFVKDEDVNVADIKFRDKLREKQRXXXXXXXXXXXXXXXXXXXWKAKLNATSTVMRK 1437
ST GF ED+ + DIKF+DK REKQR +A TVMRK
Sbjct: 485 STVGFTPAEDIKLEDIKFKDKSREKQRKKNLQAKKEKQQQEPKPQKPNKNPSAAPTVMRK 544
Query: 1438 KTAKQRRAAQTVEDADELDRDYRXXXXXXXGTIDESEFAKLTGTEELI 1581
KTAKQRRAAQTVED DEL R+YR GTIDESEFAKLTGTE+L+
Sbjct: 545 KTAKQRRAAQTVEDEDELSREYRLLKKLKKGTIDESEFAKLTGTEDLL 592
>ref|XP_002312182.1| predicted protein [Populus trichocarpa] gi|222852002|gb|EEE89549.1|
predicted protein [Populus trichocarpa]
Length = 592
Score = 739 bits (1909), Expect = 0.0
Identities = 376/529 (71%), Positives = 438/529 (82%), Gaps = 2/529 (0%)
Frame = +1
Query: 1 GSGKTLAFVVPLVEILRRSSETPKPHKVMGVILSPTRELSTQIYHVAQTFVETLSNVRSM 180
GSGKTLAFVVPLVEILRRSS +PKPH+VMG+I+SPTRELS+QIY+VAQ F+ TLSN +SM
Sbjct: 65 GSGKTLAFVVPLVEILRRSS-SPKPHQVMGIIISPTRELSSQIYNVAQPFIATLSNFKSM 123
Query: 181 LLVGGTSLRADMKSIEEEGANLLIGTPGRIYDIMERMDILDFRNLEILILDEADRLLEMG 360
LLVGG ++AD+K IEEEGANLLIGTPGR++DIM+R+D+LDFRNLE+LILDEADRLL+MG
Sbjct: 124 LLVGGMDVKADVKMIEEEGANLLIGTPGRLFDIMDRVDVLDFRNLEVLILDEADRLLDMG 183
Query: 361 FQKQINSIISHLPKLRRTGLFSATQTEAVEELSKAGLRNPVRVEVRTEMKMLD--ISSKQ 534
FQKQ+NSIIS LPKLRRTGLFSATQTEAVEELSKAGLRNPV+VEVR E K L+ +S +Q
Sbjct: 184 FQKQLNSIISRLPKLRRTGLFSATQTEAVEELSKAGLRNPVKVEVRAETKSLNNSVSGQQ 243
Query: 535 LASSKTPLGLHNEYLKCEAEKKSSQLVDFITKHVNEKMIIYFMTCACVDYWWVVLQQLAA 714
LA SKTP GL EYL+CEA+KK SQLVD + K+ ++K+IIYFMTCACVDYW VVL +L
Sbjct: 244 LAPSKTPSGLLLEYLECEADKKPSQLVDLLVKNKSKKIIIYFMTCACVDYWGVVLPRLTV 303
Query: 715 LKKCPIISLHGKMKQIGREKALASFTELSSGVLLCTDVAARGLDIPGIDWIVQYDPPQDP 894
L +ISLHGKMKQ REKAL SFT L+SG+LLCTDVAARGLDIPG+D IVQYDPPQDP
Sbjct: 304 LNGFSLISLHGKMKQTAREKALTSFTSLTSGILLCTDVAARGLDIPGVDCIVQYDPPQDP 363
Query: 895 NVFVHRVGRTARFGRSGRAILFLLPKEEAYAEFLRIRNVPLEERECCNDVPDIVPQIRSA 1074
NVFVHRVGRTAR GR G +I+FLLPKEEAY EFLRIR VPL ER+C +D PD+VPQIRSA
Sbjct: 364 NVFVHRVGRTARLGRQGSSIVFLLPKEEAYVEFLRIRRVPLLERKCADDAPDVVPQIRSA 423
Query: 1075 AKEDRDVMEKGLKAFVSFIRAYKEHHCPYIFRLKDLEIGKLAMGYGLLQLPAIPDVKQYK 1254
AK+DRDVMEKGL+AFVS+IRAYKEHHC YIFR K+LE+GKL MGYGLLQLP++P+VK +
Sbjct: 424 AKKDRDVMEKGLRAFVSYIRAYKEHHCSYIFRWKELEVGKLGMGYGLLQLPSMPEVKHHS 483
Query: 1255 LSTDGFVKDEDVNVADIKFRDKLREKQRXXXXXXXXXXXXXXXXXXXWKAKLNATSTVMR 1434
LST F +D+N+ +IK++DK R+KQR +A +T MR
Sbjct: 484 LSTKDFTPVDDLNLEEIKYKDKSRQKQRRKNLQAKKEARQQESKPQKVSKTPSAAATAMR 543
Query: 1435 KKTAKQRRAAQTVEDADELDRDYRXXXXXXXGTIDESEFAKLTGTEELI 1581
KKTAKQRRAAQTVED +EL R+YR GTIDESEF KLTGT+EL+
Sbjct: 544 KKTAKQRRAAQTVEDEEELAREYRLLKKLKKGTIDESEFEKLTGTDELL 592
>ref|XP_003552218.1| PREDICTED: DEAD-box ATP-dependent RNA helicase 18-like [Glycine max]
Length = 589
Score = 732 bits (1889), Expect = 0.0
Identities = 373/529 (70%), Positives = 433/529 (81%), Gaps = 2/529 (0%)
Frame = +1
Query: 1 GSGKTLAFVVPLVEILRRSSETPKPHKVMGVILSPTRELSTQIYHVAQTFVETLSNVRSM 180
GSGKTLAFVVPLVEILRRSS PKPH+V+G+I+SPTRELSTQIYHVAQ F+ TL+NV+SM
Sbjct: 62 GSGKTLAFVVPLVEILRRSSSHPKPHQVLGIIISPTRELSTQIYHVAQPFISTLANVKSM 121
Query: 181 LLVGGTSLRADMKSIEEEGANLLIGTPGRIYDIMERMDILDFRNLEILILDEADRLLEMG 360
LLVGG ++AD+K IEEEGAN+LIGTPGR+YDIM RMD+LD +NLEILILDEADRLL+MG
Sbjct: 122 LLVGGAEVKADLKKIEEEGANILIGTPGRLYDIMNRMDVLDLKNLEILILDEADRLLDMG 181
Query: 361 FQKQINSIISHLPKLRRTGLFSATQTEAVEELSKAGLRNPVRVEVRTEMKMLD--ISSKQ 534
FQKQI SII+ LPKLRRTGLFSATQTEA+EEL+KAGLRNPVRVEVR E K + SSKQ
Sbjct: 182 FQKQITSIITLLPKLRRTGLFSATQTEAIEELAKAGLRNPVRVEVRAETKSENGPASSKQ 241
Query: 535 LASSKTPLGLHNEYLKCEAEKKSSQLVDFITKHVNEKMIIYFMTCACVDYWWVVLQQLAA 714
SSKTP GLH EYL+CEA+KK SQLV + K++++K+IIYFMTCACVDYW VL L+
Sbjct: 242 PESSKTPSGLHIEYLECEADKKPSQLVHILIKNLSKKIIIYFMTCACVDYWGAVLPCLSV 301
Query: 715 LKKCPIISLHGKMKQIGREKALASFTELSSGVLLCTDVAARGLDIPGIDWIVQYDPPQDP 894
LK +I LHGKMKQ REKALASFT LS+G+LLCTDVAARGLDIPG+D IVQYDPPQDP
Sbjct: 302 LKGFSLIPLHGKMKQSAREKALASFTSLSNGILLCTDVAARGLDIPGVDCIVQYDPPQDP 361
Query: 895 NVFVHRVGRTARFGRSGRAILFLLPKEEAYAEFLRIRNVPLEERECCNDVPDIVPQIRSA 1074
NVF+HRVGRTAR G+ G A++FLLPKEE+Y EFLRIR VPL+ER C ++ D+VPQIRSA
Sbjct: 362 NVFIHRVGRTARLGKQGHAVVFLLPKEESYVEFLRIRRVPLQERICADEASDVVPQIRSA 421
Query: 1075 AKEDRDVMEKGLKAFVSFIRAYKEHHCPYIFRLKDLEIGKLAMGYGLLQLPAIPDVKQYK 1254
AK+DRDVMEKG+KAFVS+IRAYKEHHC YIFR K+LEIGKLA G+GLLQLP++P+VK +
Sbjct: 422 AKKDRDVMEKGIKAFVSYIRAYKEHHCSYIFRWKELEIGKLATGFGLLQLPSMPEVKHHS 481
Query: 1255 LSTDGFVKDEDVNVADIKFRDKLREKQRXXXXXXXXXXXXXXXXXXXWKAKLNATSTVMR 1434
LS DGF ED+N+ DIK+RDK REKQR K NA T MR
Sbjct: 482 LSIDGFEPVEDINLGDIKYRDKSREKQRKKNLQAKKEAKEKEPKPQKPKKTPNA-PTDMR 540
Query: 1435 KKTAKQRRAAQTVEDADELDRDYRXXXXXXXGTIDESEFAKLTGTEELI 1581
KKTA+QRRA QT+ED +EL +YR GTIDE+E+AKLTGTEEL+
Sbjct: 541 KKTARQRRAQQTMEDEEELMHEYRLLKKLKKGTIDENEYAKLTGTEELL 589
>ref|XP_003538481.1| PREDICTED: DEAD-box ATP-dependent RNA helicase 18-like isoform 1
[Glycine max]
Length = 589
Score = 730 bits (1885), Expect = 0.0
Identities = 372/529 (70%), Positives = 430/529 (81%), Gaps = 2/529 (0%)
Frame = +1
Query: 1 GSGKTLAFVVPLVEILRRSSETPKPHKVMGVILSPTRELSTQIYHVAQTFVETLSNVRSM 180
GSGKTLAFV+PLVEILRRSS PKPHKV+G+I+SPTRELSTQIYHVAQ+F+ TL NV+SM
Sbjct: 62 GSGKTLAFVIPLVEILRRSSSHPKPHKVLGIIISPTRELSTQIYHVAQSFISTLMNVKSM 121
Query: 181 LLVGGTSLRADMKSIEEEGANLLIGTPGRIYDIMERMDILDFRNLEILILDEADRLLEMG 360
LLVGG ++ D+K IEEEGAN+LIGTPGR+YDIM RMD+LD +NLEILILDEADRLL+MG
Sbjct: 122 LLVGGAEVKTDIKKIEEEGANILIGTPGRLYDIMNRMDVLDLKNLEILILDEADRLLDMG 181
Query: 361 FQKQINSIISHLPKLRRTGLFSATQTEAVEELSKAGLRNPVRVEVRTEMKMLD--ISSKQ 534
FQKQI SIIS LPKLRRTGLFSATQTEA+EEL+KAGLRNPVRVEVR E K SSKQ
Sbjct: 182 FQKQITSIISLLPKLRRTGLFSATQTEAIEELAKAGLRNPVRVEVRAETKSEKGPASSKQ 241
Query: 535 LASSKTPLGLHNEYLKCEAEKKSSQLVDFITKHVNEKMIIYFMTCACVDYWWVVLQQLAA 714
SSKTP GLH EYL+CE +KK SQL+D + K+ ++K+IIYFMTCACVDYW VL L+
Sbjct: 242 PESSKTPSGLHIEYLECEEDKKPSQLLDILIKNRSKKIIIYFMTCACVDYWGAVLPCLSV 301
Query: 715 LKKCPIISLHGKMKQIGREKALASFTELSSGVLLCTDVAARGLDIPGIDWIVQYDPPQDP 894
LK +I LHGKMKQ REKALASFT LS+G+LLCTDVAARGLDIPG+D IVQYDPPQDP
Sbjct: 302 LKGFSLIPLHGKMKQSAREKALASFTTLSNGILLCTDVAARGLDIPGVDCIVQYDPPQDP 361
Query: 895 NVFVHRVGRTARFGRSGRAILFLLPKEEAYAEFLRIRNVPLEERECCNDVPDIVPQIRSA 1074
NVF+HRVGRTAR G+ G A++FLLPKEE+Y EFLRIR VPL+ER C +D D+VPQIRSA
Sbjct: 362 NVFIHRVGRTARLGKQGHAVVFLLPKEESYVEFLRIRRVPLQERICSDDATDVVPQIRSA 421
Query: 1075 AKEDRDVMEKGLKAFVSFIRAYKEHHCPYIFRLKDLEIGKLAMGYGLLQLPAIPDVKQYK 1254
AK+DRDVMEKG+KAFVS+IRAYKEHHC YIFR K+LEIGKLA G+GLLQLP++P+VK +
Sbjct: 422 AKKDRDVMEKGIKAFVSYIRAYKEHHCSYIFRWKELEIGKLATGFGLLQLPSMPEVKHHS 481
Query: 1255 LSTDGFVKDEDVNVADIKFRDKLREKQRXXXXXXXXXXXXXXXXXXXWKAKLNATSTVMR 1434
LSTDGF ED+N+ DIK+RDK REKQR K K T R
Sbjct: 482 LSTDGFEPVEDINLVDIKYRDKSREKQRKKNLQAKKEAKEREPKPQKPK-KTPIAPTATR 540
Query: 1435 KKTAKQRRAAQTVEDADELDRDYRXXXXXXXGTIDESEFAKLTGTEELI 1581
KKTA+QRRA QT+ED +EL ++YR GTIDE+E+AKLTGTEEL+
Sbjct: 541 KKTARQRRAQQTMEDEEELMQEYRLLKKLKKGTIDENEYAKLTGTEELL 589