BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00017952
         (429 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002270963.2| PREDICTED: pentatricopeptide repeat-containi...   153   2e-35
emb|CBI29222.3| unnamed protein product [Vitis vinifera]              153   2e-35
ref|XP_002303480.1| predicted protein [Populus trichocarpa] gi|2...   147   7e-34
ref|XP_004149000.1| PREDICTED: pentatricopeptide repeat-containi...   129   2e-28
sp|Q940A6.2|PP325_ARATH RecName: Full=Pentatricopeptide repeat-c...   122   4e-26

>ref|XP_002270963.2| PREDICTED: pentatricopeptide repeat-containing protein At4g19440,
           chloroplastic [Vitis vinifera]
          Length = 1022

 Score =  153 bits (386), Expect = 2e-35
 Identities = 74/142 (52%), Positives = 107/142 (75%)
 Frame = -2

Query: 428 INPKTTLNLFSFASNTLNYKFSVKSYCLLIRFLIGSNLVSPARLVLIRVIDDRGLAIFYN 249
           +NPKT LN F FAS++  ++F+++SYC+L+R LI S  VSPARL+LIR+ID R L + + 
Sbjct: 157 VNPKTALNFFYFASDSCGFRFTLRSYCVLMRSLIVSGFVSPARLLLIRLID-RKLPVLFG 215

Query: 248 SLENRHLEIANAVAEISGGRDGGVGNAVFDLLVHVYCTQFKILGLHLAFDVFKFLTSQDL 69
             +NRH+EIA+A+A+++   + GV  A  DLL+HVYCTQF+ +G   A  VF+FL ++ +
Sbjct: 216 DPKNRHIEIASAMADLNEVGESGVAVAAVDLLIHVYCTQFRNVGFRNAIGVFRFLANKGV 275

Query: 68  FPSLKTCNFLLSSLVRGGELER 3
           FP++KTC FLLSSLV+  ELE+
Sbjct: 276 FPTVKTCTFLLSSLVKANELEK 297


>emb|CBI29222.3| unnamed protein product [Vitis vinifera]
          Length = 826

 Score =  153 bits (386), Expect = 2e-35
 Identities = 74/142 (52%), Positives = 107/142 (75%)
 Frame = -2

Query: 428 INPKTTLNLFSFASNTLNYKFSVKSYCLLIRFLIGSNLVSPARLVLIRVIDDRGLAIFYN 249
           +NPKT LN F FAS++  ++F+++SYC+L+R LI S  VSPARL+LIR+ID R L + + 
Sbjct: 90  VNPKTALNFFYFASDSCGFRFTLRSYCVLMRSLIVSGFVSPARLLLIRLID-RKLPVLFG 148

Query: 248 SLENRHLEIANAVAEISGGRDGGVGNAVFDLLVHVYCTQFKILGLHLAFDVFKFLTSQDL 69
             +NRH+EIA+A+A+++   + GV  A  DLL+HVYCTQF+ +G   A  VF+FL ++ +
Sbjct: 149 DPKNRHIEIASAMADLNEVGESGVAVAAVDLLIHVYCTQFRNVGFRNAIGVFRFLANKGV 208

Query: 68  FPSLKTCNFLLSSLVRGGELER 3
           FP++KTC FLLSSLV+  ELE+
Sbjct: 209 FPTVKTCTFLLSSLVKANELEK 230


>ref|XP_002303480.1| predicted protein [Populus trichocarpa] gi|222840912|gb|EEE78459.1|
           predicted protein [Populus trichocarpa]
          Length = 836

 Score =  147 bits (372), Expect = 7e-34
 Identities = 73/142 (51%), Positives = 99/142 (69%)
 Frame = -2

Query: 428 INPKTTLNLFSFASNTLNYKFSVKSYCLLIRFLIGSNLVSPARLVLIRVIDDRGLAIFYN 249
           +NPKT LN F F S T  ++F+ +SYC+LI  L+G++L+SPARL+LIR+ID +  A +  
Sbjct: 98  VNPKTALNFFHFVSETCKFRFTARSYCVLIHLLVGNDLLSPARLLLIRLIDGKVPAFYAR 157

Query: 248 SLENRHLEIANAVAEISGGRDGGVGNAVFDLLVHVYCTQFKILGLHLAFDVFKFLTSQDL 69
           + E+RH EIA  +A+ +   +  +G  + DLLVHVY TQFK LG   A DVF  L  + L
Sbjct: 158 NFESRHFEIAQIMADFNLVFEPVIGVKIADLLVHVYSTQFKHLGFGFAADVFSLLAKKGL 217

Query: 68  FPSLKTCNFLLSSLVRGGELER 3
           FPSLKTC FLLSSLV+  EL++
Sbjct: 218 FPSLKTCTFLLSSLVKANELKK 239


>ref|XP_004149000.1| PREDICTED: pentatricopeptide repeat-containing protein At4g19440,
           chloroplastic-like [Cucumis sativus]
          Length = 822

 Score =  129 bits (324), Expect = 2e-28
 Identities = 70/141 (49%), Positives = 88/141 (62%)
 Frame = -2

Query: 425 NPKTTLNLFSFASNTLNYKFSVKSYCLLIRFLIGSNLVSPARLVLIRVIDDRGLAIFYNS 246
           NP T LN F FASN+  ++F++ SYC LI  LI S  + PARL+LIR+ID   L +    
Sbjct: 88  NPMTCLNFFYFASNSFKFRFTIHSYCTLILLLIRSKFIPPARLLLIRLIDGN-LPVLNLD 146

Query: 245 LENRHLEIANAVAEISGGRDGGVGNAVFDLLVHVYCTQFKILGLHLAFDVFKFLTSQDLF 66
            E  H+EIANA+  ++           FDLL+HVY TQF+ LG   A DVF  L  +  F
Sbjct: 147 SEKFHIEIANALFGLTSVVGRFEWTQAFDLLIHVYSTQFRNLGFSCAVDVFYLLARKGTF 206

Query: 65  PSLKTCNFLLSSLVRGGELER 3
           PSLKTCNFLLSSLV+  E E+
Sbjct: 207 PSLKTCNFLLSSLVKANEFEK 227


>sp|Q940A6.2|PP325_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At4g19440, chloroplastic; Flags: Precursor
          Length = 838

 Score =  122 bits (305), Expect = 4e-26
 Identities = 64/142 (45%), Positives = 95/142 (66%)
 Frame = -2

Query: 428 INPKTTLNLFSFASNTLNYKFSVKSYCLLIRFLIGSNLVSPARLVLIRVIDDRGLAIFYN 249
           +NPKT L+ F  AS++ ++ FS++SYCLLI  L+ +NL+S AR+VLIR+I+   + +   
Sbjct: 117 VNPKTALDFFRLASDSFSFSFSLRSYCLLIGLLLDANLLSAARVVLIRLINGN-VPVLPC 175

Query: 248 SLENRHLEIANAVAEISGGRDGGVGNAVFDLLVHVYCTQFKILGLHLAFDVFKFLTSQDL 69
            L +  + IA+A+A +S   D  +   + DLL+ VYCTQFK  G +LA DVF  L ++ +
Sbjct: 176 GLRDSRVAIADAMASLSLCFDEEIRRKMSDLLIEVYCTQFKRDGCYLALDVFPVLANKGM 235

Query: 68  FPSLKTCNFLLSSLVRGGELER 3
           FPS  TCN LL+SLVR  E ++
Sbjct: 236 FPSKTTCNILLTSLVRANEFQK 257