BLASTX nr result

ID: Coptis23_contig00017918 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00017918
         (494 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002275126.1| PREDICTED: RNA polymerase II transcriptional...   117   7e-25
ref|XP_004146395.1| PREDICTED: RNA polymerase II transcriptional...   113   1e-23
gb|AFK40203.1| unknown [Lotus japonicus]                              108   6e-22
ref|NP_001241012.1| uncharacterized protein LOC100820368 [Glycin...   108   6e-22
ref|XP_002309936.1| predicted protein [Populus trichocarpa] gi|2...   108   6e-22

>ref|XP_002275126.1| PREDICTED: RNA polymerase II transcriptional coactivator KIWI
           [Vitis vinifera] gi|147846591|emb|CAN79502.1|
           hypothetical protein VITISV_022689 [Vitis vinifera]
           gi|296082597|emb|CBI21602.3| unnamed protein product
           [Vitis vinifera]
          Length = 103

 Score =  117 bits (294), Expect = 7e-25
 Identities = 52/72 (72%), Positives = 64/72 (88%)
 Frame = +3

Query: 6   ADDSDDIIACEISKNRRVTVRSWQGKPVIDIREFYVKDGNTLPGKKGISLSMDQWQILRD 185
           +DD D+II CEIS+NRRV+VR+WQGK  +DIREFYVKDG  +PGKKGISL+MDQW +LRD
Sbjct: 31  SDDPDNIIVCEISRNRRVSVRNWQGKVQVDIREFYVKDGKQMPGKKGISLTMDQWNVLRD 90

Query: 186 HMDAIDEAVAEN 221
           H++ IDEAVA+N
Sbjct: 91  HVNEIDEAVADN 102


>ref|XP_004146395.1| PREDICTED: RNA polymerase II transcriptional coactivator KIWI-like
           [Cucumis sativus] gi|449527765|ref|XP_004170880.1|
           PREDICTED: RNA polymerase II transcriptional coactivator
           KIWI-like [Cucumis sativus]
          Length = 104

 Score =  113 bits (283), Expect = 1e-23
 Identities = 49/73 (67%), Positives = 64/73 (87%)
 Frame = +3

Query: 6   ADDSDDIIACEISKNRRVTVRSWQGKPVIDIREFYVKDGNTLPGKKGISLSMDQWQILRD 185
           +DD+D+I+ CE+SKNRRV VR+WQGK V+DIREFYVKDG  +PGKKGISLS+DQW +L +
Sbjct: 29  SDDTDEIVVCELSKNRRVMVRNWQGKIVVDIREFYVKDGKQMPGKKGISLSLDQWNVLLN 88

Query: 186 HMDAIDEAVAENT 224
           H++ ID+AV EN+
Sbjct: 89  HVEEIDKAVNENS 101


>gb|AFK40203.1| unknown [Lotus japonicus]
          Length = 106

 Score =  108 bits (269), Expect = 6e-22
 Identities = 47/71 (66%), Positives = 61/71 (85%)
 Frame = +3

Query: 9   DDSDDIIACEISKNRRVTVRSWQGKPVIDIREFYVKDGNTLPGKKGISLSMDQWQILRDH 188
           +D D I+ CEISKNRRV+VR+WQG+ V+DI EFYVKDG  +PGKKGISL+MDQW +LR+H
Sbjct: 35  EDPDSIVVCEISKNRRVSVRNWQGRIVVDILEFYVKDGKQMPGKKGISLTMDQWNVLRNH 94

Query: 189 MDAIDEAVAEN 221
           ++ ID+AV E+
Sbjct: 95  IEEIDKAVNES 105


>ref|NP_001241012.1| uncharacterized protein LOC100820368 [Glycine max]
           gi|255637253|gb|ACU18957.1| unknown [Glycine max]
          Length = 105

 Score =  108 bits (269), Expect = 6e-22
 Identities = 47/72 (65%), Positives = 60/72 (83%)
 Frame = +3

Query: 9   DDSDDIIACEISKNRRVTVRSWQGKPVIDIREFYVKDGNTLPGKKGISLSMDQWQILRDH 188
           DD D +  CEISKNRRV VR+W+G  ++DIREFYVKDG  LPG+KGISL+MDQW +LR+H
Sbjct: 34  DDPDSVTICEISKNRRVAVRNWKGSIMVDIREFYVKDGKQLPGRKGISLTMDQWNVLRNH 93

Query: 189 MDAIDEAVAENT 224
           ++ ID+AV EN+
Sbjct: 94  VEEIDKAVNENS 105


>ref|XP_002309936.1| predicted protein [Populus trichocarpa] gi|222852839|gb|EEE90386.1|
           predicted protein [Populus trichocarpa]
          Length = 120

 Score =  108 bits (269), Expect = 6e-22
 Identities = 46/73 (63%), Positives = 63/73 (86%)
 Frame = +3

Query: 3   AADDSDDIIACEISKNRRVTVRSWQGKPVIDIREFYVKDGNTLPGKKGISLSMDQWQILR 182
           ++D+SD+I+ CEI +NRRVTVR+W+GK  +DIREFY KDGN LPGKKGI+LS+DQW +LR
Sbjct: 48  SSDNSDEIVVCEIGRNRRVTVRNWRGKINVDIREFYPKDGNLLPGKKGITLSLDQWNMLR 107

Query: 183 DHMDAIDEAVAEN 221
           DH++ ID+A+  +
Sbjct: 108 DHVEEIDKALGHS 120


Top