BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00017914
         (390 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CBI39452.3| unnamed protein product [Vitis vinifera]              186   1e-45
ref|XP_002266503.1| PREDICTED: pentatricopeptide repeat-containi...   186   1e-45
emb|CAN73209.1| hypothetical protein VITISV_002838 [Vitis vinifera]   186   1e-45
ref|XP_002326829.1| predicted protein [Populus trichocarpa] gi|2...   181   5e-44
ref|XP_002511627.1| pentatricopeptide repeat-containing protein,...   179   3e-43

>emb|CBI39452.3| unnamed protein product [Vitis vinifera]
          Length = 718

 Score =  186 bits (473), Expect = 1e-45
 Identities = 87/129 (67%), Positives = 105/129 (81%)
 Frame = +2

Query: 2   QNFVKIKEVLEEMIGGGEFTPDTCTFNTLLNAHCNVNNMDEAWKVFMKMRELGVQPDSAS 181
           Q   KIKE+LE M+G G F PDTCT NTL+ AHC +  ++EA+ VF KM EL VQPDSA+
Sbjct: 357 QKLDKIKEILEGMVGDGGFIPDTCTLNTLIKAHCTMGKLEEAFSVFEKMSELRVQPDSAT 416

Query: 182 YSILIRNLHQKGEIERAEELFDELSETEILVHDEGCVPVVAAYNPMFEYLCAKGKTKKAE 361
           YS+L+R+L Q+G+  RAEE FDEL+E EIL+HD GC P+VAAYNPMFEYLC+ GKTKKAE
Sbjct: 417 YSVLVRSLCQRGDFRRAEEFFDELAEKEILLHDVGCKPLVAAYNPMFEYLCSNGKTKKAE 476

Query: 362 RVFRQLLKR 388
           RVFRQL+KR
Sbjct: 477 RVFRQLMKR 485



 Score = 56.6 bits (135), Expect = 2e-06
 Identities = 38/133 (28%), Positives = 63/133 (47%), Gaps = 29/133 (21%)
 Frame = +2

Query: 77  FNTLLNAHCNVNNMDEAWKVFMKMRELGVQPDSASYSILIRNLHQKGEIERAEELFDELS 256
           FN+L+ ++       E+ KVF  M+E+GV P   +++ L+  + ++G    A++LFDE+ 
Sbjct: 168 FNSLIRSYGWAGLFQESIKVFKTMKEIGVSPSVVTFNSLLSIVLKRGRTSMAKQLFDEML 227

Query: 257 ET----------EILVH--------DEG-----------CVPVVAAYNPMFEYLCAKGKT 349
           +T           IL+         DEG           C P V  YN + + LC  GK 
Sbjct: 228 DTYGVTPDTYTFNILIRGFCMNSMVDEGFWFFKEMSRFKCDPDVVTYNTLVDGLCRAGKV 287

Query: 350 KKAERVFRQLLKR 388
           K A  V + ++K+
Sbjct: 288 KIAHNVVKGMVKK 300


>ref|XP_002266503.1| PREDICTED: pentatricopeptide repeat-containing protein At1g02060,
           chloroplastic-like [Vitis vinifera]
          Length = 746

 Score =  186 bits (473), Expect = 1e-45
 Identities = 87/129 (67%), Positives = 105/129 (81%)
 Frame = +2

Query: 2   QNFVKIKEVLEEMIGGGEFTPDTCTFNTLLNAHCNVNNMDEAWKVFMKMRELGVQPDSAS 181
           Q   KIKE+LE M+G G F PDTCT NTL+ AHC +  ++EA+ VF KM EL VQPDSA+
Sbjct: 357 QKLDKIKEILEGMVGDGGFIPDTCTLNTLIKAHCTMGKLEEAFSVFEKMSELRVQPDSAT 416

Query: 182 YSILIRNLHQKGEIERAEELFDELSETEILVHDEGCVPVVAAYNPMFEYLCAKGKTKKAE 361
           YS+L+R+L Q+G+  RAEE FDEL+E EIL+HD GC P+VAAYNPMFEYLC+ GKTKKAE
Sbjct: 417 YSVLVRSLCQRGDFRRAEEFFDELAEKEILLHDVGCKPLVAAYNPMFEYLCSNGKTKKAE 476

Query: 362 RVFRQLLKR 388
           RVFRQL+KR
Sbjct: 477 RVFRQLMKR 485



 Score = 56.6 bits (135), Expect = 2e-06
 Identities = 38/133 (28%), Positives = 63/133 (47%), Gaps = 29/133 (21%)
 Frame = +2

Query: 77  FNTLLNAHCNVNNMDEAWKVFMKMRELGVQPDSASYSILIRNLHQKGEIERAEELFDELS 256
           FN+L+ ++       E+ KVF  M+E+GV P   +++ L+  + ++G    A++LFDE+ 
Sbjct: 168 FNSLIRSYGWAGLFQESIKVFKTMKEIGVSPSVVTFNSLLSIVLKRGRTSMAKQLFDEML 227

Query: 257 ET----------EILVH--------DEG-----------CVPVVAAYNPMFEYLCAKGKT 349
           +T           IL+         DEG           C P V  YN + + LC  GK 
Sbjct: 228 DTYGVTPDTYTFNILIRGFCMNSMVDEGFWFFKEMSRFKCDPDVVTYNTLVDGLCRAGKV 287

Query: 350 KKAERVFRQLLKR 388
           K A  V + ++K+
Sbjct: 288 KIAHNVVKGMVKK 300


>emb|CAN73209.1| hypothetical protein VITISV_002838 [Vitis vinifera]
          Length = 1024

 Score =  186 bits (473), Expect = 1e-45
 Identities = 87/129 (67%), Positives = 105/129 (81%)
 Frame = +2

Query: 2   QNFVKIKEVLEEMIGGGEFTPDTCTFNTLLNAHCNVNNMDEAWKVFMKMRELGVQPDSAS 181
           Q   KIKE+LE M+G G F PDTCT NTL+ AHC +  ++EA+ VF KM EL VQPDSA+
Sbjct: 428 QKLDKIKEILEGMVGDGGFIPDTCTLNTLIKAHCTMGKLEEAFSVFEKMSELRVQPDSAT 487

Query: 182 YSILIRNLHQKGEIERAEELFDELSETEILVHDEGCVPVVAAYNPMFEYLCAKGKTKKAE 361
           YS+L+R+L Q+G+  RAEE FDEL+E EIL+HD GC P+VAAYNPMFEYLC+ GKTKKAE
Sbjct: 488 YSVLVRSLCQRGDFRRAEEFFDELAEKEILLHDVGCKPLVAAYNPMFEYLCSNGKTKKAE 547

Query: 362 RVFRQLLKR 388
           RVFRQL+KR
Sbjct: 548 RVFRQLMKR 556


>ref|XP_002326829.1| predicted protein [Populus trichocarpa] gi|222835144|gb|EEE73579.1|
           predicted protein [Populus trichocarpa]
          Length = 664

 Score =  181 bits (459), Expect = 5e-44
 Identities = 83/129 (64%), Positives = 106/129 (82%)
 Frame = +2

Query: 2   QNFVKIKEVLEEMIGGGEFTPDTCTFNTLLNAHCNVNNMDEAWKVFMKMRELGVQPDSAS 181
           Q F KIKE+L   +GG  F PDTCT+NTL+NA C+  N DEA K+F KM+EL VQPDSA+
Sbjct: 289 QKFDKIKEILGGAVGGRGFVPDTCTYNTLMNAQCDAGNFDEALKMFKKMKELKVQPDSAT 348

Query: 182 YSILIRNLHQKGEIERAEELFDELSETEILVHDEGCVPVVAAYNPMFEYLCAKGKTKKAE 361
           YS+LIRNL Q+G+ ERAE+LFD+LS+ +IL+ D+GC P+VAAYNP+F++LC  GKT KAE
Sbjct: 349 YSVLIRNLCQRGDFERAEQLFDKLSDEDILLRDDGCTPLVAAYNPIFDFLCKNGKTHKAE 408

Query: 362 RVFRQLLKR 388
           RVFRQL+K+
Sbjct: 409 RVFRQLMKK 417



 Score = 57.4 bits (137), Expect = 1e-06
 Identities = 33/121 (27%), Positives = 57/121 (47%)
 Frame = +2

Query: 26  VLEEMIGGGEFTPDTCTFNTLLNAHCNVNNMDEAWKVFMKMRELGVQPDSASYSILIRNL 205
           V +EM G    TPDT TFN L+   C  + +DE ++ F +M     +PD  +Y+ L+  L
Sbjct: 154 VFDEMCGTYGVTPDTYTFNILIRGFCKNSMVDEGFRFFKEMSRFNCEPDVVTYNTLVDGL 213

Query: 206 HQKGEIERAEELFDELSETEILVHDEGCVPVVAAYNPMFEYLCAKGKTKKAERVFRQLLK 385
            + G++  A  +   + +       +   P V  Y  +    C K +  +A  VF +++ 
Sbjct: 214 CRAGKVRIAHNVVKGMVKKM-----KDLSPDVVTYTTLVRGYCMKQEIDEALVVFEEMVS 268

Query: 386 R 388
           R
Sbjct: 269 R 269



 Score = 55.5 bits (132), Expect = 4e-06
 Identities = 29/109 (26%), Positives = 55/109 (50%)
 Frame = +2

Query: 53  EFTPDTCTFNTLLNAHCNVNNMDEAWKVFMKMRELGVQPDSASYSILIRNLHQKGEIERA 232
           + +PD  T+ TL+  +C    +DEA  VF +M   G++P+  +Y+ LI+ L +  + ++ 
Sbjct: 235 DLSPDVVTYTTLVRGYCMKQEIDEALVVFEEMVSRGLKPNDITYNTLIKGLCEVQKFDKI 294

Query: 233 EELFDELSETEILVHDEGCVPVVAAYNPMFEYLCAKGKTKKAERVFRQL 379
           +E+          V   G VP    YN +    C  G   +A ++F+++
Sbjct: 295 KEILGG------AVGGRGFVPDTCTYNTLMNAQCDAGNFDEALKMFKKM 337


>ref|XP_002511627.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223548807|gb|EEF50296.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 1163

 Score =  179 bits (453), Expect = 3e-43
 Identities = 84/129 (65%), Positives = 102/129 (79%)
 Frame = +2

Query: 2   QNFVKIKEVLEEMIGGGEFTPDTCTFNTLLNAHCNVNNMDEAWKVFMKMRELGVQPDSAS 181
           Q   KIK++ E  +GGG F PDTCT NTL+NAHCN  N+++A +VF KM  L V+PDSA+
Sbjct: 348 QKIDKIKQIFEGALGGGGFIPDTCTLNTLMNAHCNAGNLNDALEVFEKMMVLNVRPDSAT 407

Query: 182 YSILIRNLHQKGEIERAEELFDELSETEILVHDEGCVPVVAAYNPMFEYLCAKGKTKKAE 361
           YS+LIRNL Q+G  ERAE+LFDELSE EIL+ D+GC P+VAAY  MFE+LC  GKT KAE
Sbjct: 408 YSVLIRNLCQRGNFERAEQLFDELSEKEILLRDDGCTPLVAAYKSMFEFLCRNGKTAKAE 467

Query: 362 RVFRQLLKR 388
           RVFRQL+KR
Sbjct: 468 RVFRQLMKR 476



 Score = 55.8 bits (133), Expect = 3e-06
 Identities = 31/123 (25%), Positives = 59/123 (47%)
 Frame = +2

Query: 20  KEVLEEMIGGGEFTPDTCTFNTLLNAHCNVNNMDEAWKVFMKMRELGVQPDSASYSILIR 199
           + V +EM+     TPDT TFN L+   C  + +DE ++ F +M      PD  +Y+ L+ 
Sbjct: 211 QSVFDEMLSTYGVTPDTYTFNILIRGFCKNSMVDEGFRFFKEMSRFKCDPDLVTYNTLVD 270

Query: 200 NLHQKGEIERAEELFDELSETEILVHDEGCVPVVAAYNPMFEYLCAKGKTKKAERVFRQL 379
            L + G++  A  + + + +    ++     P V  Y  +    C K +  +A  VF ++
Sbjct: 271 GLCRAGKVNIAHNVVNGMVKKSTNLN-----PDVVTYTTLVRGYCMKHEIDEALVVFEEM 325

Query: 380 LKR 388
           + +
Sbjct: 326 VSK 328