BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00017911
         (1365 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002278273.1| PREDICTED: replication protein A 70 kDa DNA-...   604   e-170
ref|XP_002514062.1| replication factor A 1, rfa1, putative [Rici...   590   e-166
ref|XP_003546476.1| PREDICTED: replication protein A 70 kDa DNA-...   587   e-165
gb|AAQ23194.1| RPA 70kDa subunit [Pisum sativum]                      583   e-164
ref|NP_973433.1| replication factor A1 [Arabidopsis thaliana] gi...   578   e-162

>ref|XP_002278273.1| PREDICTED: replication protein A 70 kDa DNA-binding subunit [Vitis
            vinifera] gi|297738589|emb|CBI27834.3| unnamed protein
            product [Vitis vinifera]
          Length = 622

 Score =  604 bits (1557), Expect = e-170
 Identities = 286/364 (78%), Positives = 328/364 (90%)
 Frame = +1

Query: 1    PAQKNFNHLKNEWEILLETASTVDLCIDEDSSIPQQQFSFRPISDIENTENNSILDIIGV 180
            PAQKNFNHLKNEWEI LE +S+V+LC DED SIP+QQFSFRPIS+IEN ENNSILD+IG+
Sbjct: 259  PAQKNFNHLKNEWEIFLEASSSVELCPDEDGSIPKQQFSFRPISEIENVENNSILDVIGI 318

Query: 181  VTSVNPSVPIMRKNGMETQRRVLNLKDQSGRSVELTLWGEFCNREGRELQEMVDSGHSPV 360
            V SVNPSVPI+RKNGMETQRR++NLKD SGRS+ELT+WGEFCNREG +LQEM+DSG  PV
Sbjct: 319  VISVNPSVPILRKNGMETQRRIVNLKDGSGRSIELTMWGEFCNREGHQLQEMIDSGSFPV 378

Query: 361  LAVKAGKVSDFSGKSVGTISSSQLFINPDFPEAYSLRDWFDRGGKDVASLSISRDFAPGA 540
            LAVK+GKV+DFSGKSVGTIS++QLFINPDF EA +LR+WFDRGGK+ AS SISRD  P  
Sbjct: 379  LAVKSGKVNDFSGKSVGTISATQLFINPDFTEACNLREWFDRGGKNAASQSISRDIMPAG 438

Query: 541  QRNEIRKTVSQIKAEGLGRADKPDWVTVKASVSFVKTDNFCYTACPLMIGDRQCSKKVVK 720
             RNEIRKTVSQIK EGLGR+DKPDWVTVKA++SF+KTD FCY ACPLMIGDRQC+KKV +
Sbjct: 439  SRNEIRKTVSQIKDEGLGRSDKPDWVTVKATISFIKTDTFCYAACPLMIGDRQCNKKVTR 498

Query: 721  LGETRWQCERCNQDFEECDYRYLIQAAVQDHTGLTWVTAFQESGEEILGCSAKELYSLKY 900
             G TRWQC+RCNQ+FE+CDYRYL+QA VQDHTGLTWVTAFQE+GEEILGCSAKELY LKY
Sbjct: 499  SGNTRWQCDRCNQEFEDCDYRYLLQAQVQDHTGLTWVTAFQEAGEEILGCSAKELYLLKY 558

Query: 901  EEQDDVRFEEIIHSSLFNQFLLKLKIKEEMYGDEQKVKITVVKAEKVDPSSESRYLLDII 1080
            EE+DD RF EII S L NQFL +LKIKEEMYG+EQ+VKITVVKA+KV+ +SESR+LLD+I
Sbjct: 559  EEEDDFRFGEIIRSRLLNQFLFRLKIKEEMYGEEQRVKITVVKADKVNYTSESRHLLDLI 618

Query: 1081 *RSP 1092
             + P
Sbjct: 619  SKCP 622


>ref|XP_002514062.1| replication factor A 1, rfa1, putative [Ricinus communis]
            gi|223546518|gb|EEF48016.1| replication factor A 1, rfa1,
            putative [Ricinus communis]
          Length = 670

 Score =  590 bits (1521), Expect = e-166
 Identities = 278/364 (76%), Positives = 321/364 (88%)
 Frame = +1

Query: 1    PAQKNFNHLKNEWEILLETASTVDLCIDEDSSIPQQQFSFRPISDIENTENNSILDIIGV 180
            PAQ+NFNHLKNEWEI LE  STVDLC D D+SIP+QQF+F+ IS+IEN ENNSILD+IG+
Sbjct: 305  PAQRNFNHLKNEWEIFLEATSTVDLCPDGDNSIPKQQFTFKTISEIENVENNSILDVIGI 364

Query: 181  VTSVNPSVPIMRKNGMETQRRVLNLKDQSGRSVELTLWGEFCNREGRELQEMVDSGHSPV 360
            V SVNPSVPI+RKNGMETQRR+LNLKD SGR++ELTLWG+FCN+EG++LQE+VDSG  PV
Sbjct: 365  VISVNPSVPILRKNGMETQRRILNLKDGSGRNIELTLWGDFCNKEGQQLQEIVDSGDFPV 424

Query: 361  LAVKAGKVSDFSGKSVGTISSSQLFINPDFPEAYSLRDWFDRGGKDVASLSISRDFAPGA 540
            LAVKAGKVSDFSGKS+GTISS+QLFINPD PEA+ L+DWFDRGG+  AS+SISRD  PG 
Sbjct: 425  LAVKAGKVSDFSGKSLGTISSTQLFINPDIPEAHGLKDWFDRGGQHTASVSISRDILPGG 484

Query: 541  QRNEIRKTVSQIKAEGLGRADKPDWVTVKASVSFVKTDNFCYTACPLMIGDRQCSKKVVK 720
             +NEIRKTVSQIK EGLGR+D+PDWVTV A ++FVKTD FCYTACPLMIGDRQC+KKV  
Sbjct: 485  SKNEIRKTVSQIKHEGLGRSDRPDWVTVSARITFVKTDTFCYTACPLMIGDRQCNKKVTS 544

Query: 721  LGETRWQCERCNQDFEECDYRYLIQAAVQDHTGLTWVTAFQESGEEILGCSAKELYSLKY 900
             G +RWQC+RCNQ+F+ECDYRYL+Q  +QDHTGLTWVTAFQESGEEILG  AKELY LKY
Sbjct: 545  SGNSRWQCDRCNQEFDECDYRYLLQVQIQDHTGLTWVTAFQESGEEILGLPAKELYQLKY 604

Query: 901  EEQDDVRFEEIIHSSLFNQFLLKLKIKEEMYGDEQKVKITVVKAEKVDPSSESRYLLDII 1080
            E QDD +F ++I S LF QFL +LKIKEEMYGDEQ+VKITVVKAEKV+ SSE RYLLD+I
Sbjct: 605  EMQDDTKFSDVIRSRLFQQFLFRLKIKEEMYGDEQRVKITVVKAEKVNYSSEGRYLLDLI 664

Query: 1081 *RSP 1092
             + P
Sbjct: 665  SQCP 668


>ref|XP_003546476.1| PREDICTED: replication protein A 70 kDa DNA-binding subunit-like
            [Glycine max]
          Length = 637

 Score =  587 bits (1513), Expect = e-165
 Identities = 277/360 (76%), Positives = 325/360 (90%)
 Frame = +1

Query: 1    PAQKNFNHLKNEWEILLETASTVDLCIDEDSSIPQQQFSFRPISDIENTENNSILDIIGV 180
            PAQKNFNHLKNEWEILLE++S V+LC DED SIP+QQFSFRPISDIEN +NNSILD+IGV
Sbjct: 272  PAQKNFNHLKNEWEILLESSSMVELCPDEDGSIPRQQFSFRPISDIENVDNNSILDVIGV 331

Query: 181  VTSVNPSVPIMRKNGMETQRRVLNLKDQSGRSVELTLWGEFCNREGRELQEMVDSGHSPV 360
            VTSVNPSVPI+RKNGMETQRR+L+LKD SG SVELTLWGEFCNREG++LQ+MVD+G  P+
Sbjct: 332  VTSVNPSVPILRKNGMETQRRILSLKDSSGSSVELTLWGEFCNREGQQLQDMVDAGFFPI 391

Query: 361  LAVKAGKVSDFSGKSVGTISSSQLFINPDFPEAYSLRDWFDRGGKDVASLSISRDFAPGA 540
            LAVK GKV+DFSGKS+G+IS++QLFINPDFPEA+SLR+WF+  GKD ASLSIS+D  PGA
Sbjct: 392  LAVKTGKVNDFSGKSIGSISTTQLFINPDFPEAHSLREWFELVGKDSASLSISKDIIPGA 451

Query: 541  QRNEIRKTVSQIKAEGLGRADKPDWVTVKASVSFVKTDNFCYTACPLMIGDRQCSKKVVK 720
             +NE+RKTVSQIK EGLGR+DKPDW+TV+A++ F+KTD FCYTACPLMIGDRQC+KKV +
Sbjct: 452  LKNEVRKTVSQIKDEGLGRSDKPDWITVRAAILFIKTDTFCYTACPLMIGDRQCNKKVTR 511

Query: 721  LGETRWQCERCNQDFEECDYRYLIQAAVQDHTGLTWVTAFQESGEEILGCSAKELYSLKY 900
            LG TRWQC+RCNQ+FEECDYRYL+Q  + D TGL WVTAFQE+GEEI+  SAK+LY LK+
Sbjct: 512  LGNTRWQCDRCNQEFEECDYRYLLQVQILDGTGLAWVTAFQEAGEEIMDYSAKDLYFLKH 571

Query: 901  EEQDDVRFEEIIHSSLFNQFLLKLKIKEEMYGDEQKVKITVVKAEKVDPSSESRYLLDII 1080
            EEQDD +F EII S LFNQF+ +LKIKEE+YGDEQKVKITVVKA+KV+ SSESRY+LD I
Sbjct: 572  EEQDDEKFGEIIKSRLFNQFMFRLKIKEELYGDEQKVKITVVKADKVNYSSESRYMLDTI 631


>gb|AAQ23194.1| RPA 70kDa subunit [Pisum sativum]
          Length = 637

 Score =  583 bits (1504), Expect = e-164
 Identities = 273/360 (75%), Positives = 325/360 (90%)
 Frame = +1

Query: 1    PAQKNFNHLKNEWEILLETASTVDLCIDEDSSIPQQQFSFRPISDIENTENNSILDIIGV 180
            PAQKNFNHLKNEWEI+L+  STV+LC DED S P+QQFSFRPISDIEN E+N+ILD+IGV
Sbjct: 272  PAQKNFNHLKNEWEIMLDLNSTVELCPDEDGSYPKQQFSFRPISDIENVESNAILDVIGV 331

Query: 181  VTSVNPSVPIMRKNGMETQRRVLNLKDQSGRSVELTLWGEFCNREGRELQEMVDSGHSPV 360
            VTSVNPSVPI+RKNGMET RR+LNLKD SGRSVELTLWGEFCNREG++LQEMVD+G  P+
Sbjct: 332  VTSVNPSVPILRKNGMETLRRILNLKDNSGRSVELTLWGEFCNREGQKLQEMVDAGVFPI 391

Query: 361  LAVKAGKVSDFSGKSVGTISSSQLFINPDFPEAYSLRDWFDRGGKDVASLSISRDFAPGA 540
            LAVKAGKV++FSGKS+G+IS++QLFINPDFPEA SLR WFD+ GKD ASLSIS+D   G 
Sbjct: 392  LAVKAGKVNEFSGKSIGSISTTQLFINPDFPEAQSLRAWFDQVGKDSASLSISKDITHGG 451

Query: 541  QRNEIRKTVSQIKAEGLGRADKPDWVTVKASVSFVKTDNFCYTACPLMIGDRQCSKKVVK 720
             +NEIRKTVSQI+ EGLGR+DKPDW+T++A++SF+KTD FCYTACPLMIGDRQC+KKV +
Sbjct: 452  PKNEIRKTVSQIRDEGLGRSDKPDWITIRATISFMKTDTFCYTACPLMIGDRQCNKKVTR 511

Query: 721  LGETRWQCERCNQDFEECDYRYLIQAAVQDHTGLTWVTAFQESGEEILGCSAKELYSLKY 900
             G+TRWQC+RCNQ+FEECDYRYL+QA +QDHTGLTWVTAFQE GEEI+G  AKELY+LKY
Sbjct: 512  SGDTRWQCDRCNQEFEECDYRYLLQAQIQDHTGLTWVTAFQEGGEEIMGYPAKELYALKY 571

Query: 901  EEQDDVRFEEIIHSSLFNQFLLKLKIKEEMYGDEQKVKITVVKAEKVDPSSESRYLLDII 1080
            E++DD RF +I+ S LFN F+ +LKIKEE+YG+EQKVK TVVKA+KV+ S+ESRY+LD+I
Sbjct: 572  EQEDDERFGDIVKSRLFNHFVFRLKIKEELYGEEQKVKSTVVKADKVNYSAESRYMLDLI 631


>ref|NP_973433.1| replication factor A1 [Arabidopsis thaliana]
            gi|330250915|gb|AEC06009.1| replication factor A1
            [Arabidopsis thaliana]
          Length = 617

 Score =  578 bits (1489), Expect = e-162
 Identities = 269/363 (74%), Positives = 321/363 (88%), Gaps = 1/363 (0%)
 Frame = +1

Query: 1    PAQKNFNHLKNEWEILLETASTVDLCIDEDSSIPQQQFSFRPISDIENTENNSILDIIGV 180
            PAQKNFNHLKNEWEI LE+ STV+LC DED SIP+QQFSFRPISDIEN ENN+ILD+IGV
Sbjct: 255  PAQKNFNHLKNEWEIFLESTSTVELCPDEDGSIPKQQFSFRPISDIENAENNTILDVIGV 314

Query: 181  VTSVNPSVPIMRKNGMETQRRVLNLKDQSGRSVELTLWGEFCNREGRELQEMVDSGHSPV 360
            VTSVNPSVPI+RKNGMET RR+LNLKD+SG++VE+TLWGEFCNR+GR+L+EMVDS   PV
Sbjct: 315  VTSVNPSVPILRKNGMETHRRILNLKDESGKAVEVTLWGEFCNRDGRQLEEMVDSAFHPV 374

Query: 361  LAVKAGKVSDFSGKSVGTISSSQLFINPDFPEAYSLRDWFDRGGKDVASLSISRDFAP-G 537
            LA+KAGKVSDFSGKSVGTISS+QLFINPDFPEA+ LR WFD GGKD AS SISRD  P G
Sbjct: 375  LAIKAGKVSDFSGKSVGTISSTQLFINPDFPEAHKLRTWFDYGGKDTASFSISRDTMPGG 434

Query: 538  AQRNEIRKTVSQIKAEGLGRADKPDWVTVKASVSFVKTDNFCYTACPLMIGDRQCSKKVV 717
              RNEIRK VSQIK EGLGR+DKPDW+TVKA++SF+KTD+FCYTACPLMIGD+QC+KKV 
Sbjct: 435  VSRNEIRKNVSQIKEEGLGRSDKPDWITVKATISFIKTDSFCYTACPLMIGDKQCNKKVT 494

Query: 718  KLGETRWQCERCNQDFEECDYRYLIQAAVQDHTGLTWVTAFQESGEEILGCSAKELYSLK 897
            + G  RW C+RCNQ+ +ECDYRYL+Q  +QDHTGLTW+TAFQE+GEEI+GC AK+LY++K
Sbjct: 495  RSGTNRWLCDRCNQESDECDYRYLLQVQIQDHTGLTWITAFQETGEEIMGCPAKKLYAMK 554

Query: 898  YEEQDDVRFEEIIHSSLFNQFLLKLKIKEEMYGDEQKVKITVVKAEKVDPSSESRYLLDI 1077
            YE + +  F EI+   LF+Q++LKLKIKEE YGDEQ+VK+TVVK +KV+ +SES+Y+LD+
Sbjct: 555  YELEKEEEFAEIVRDRLFHQYMLKLKIKEESYGDEQRVKMTVVKVDKVNYTSESKYMLDL 614

Query: 1078 I*R 1086
            + R
Sbjct: 615  LVR 617