BLASTX nr result
ID: Coptis23_contig00017892
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Coptis23_contig00017892
(351 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
emb|CBI27138.3| unnamed protein product [Vitis vinifera] 169 2e-40
ref|NP_197702.1| C3HC4-type RING finger domain-containing protei... 162 2e-38
ref|XP_003556575.1| PREDICTED: sacsin-like [Glycine max] 161 5e-38
ref|XP_003533689.1| PREDICTED: sacsin-like [Glycine max] 161 5e-38
ref|XP_002872036.1| zinc finger family protein [Arabidopsis lyra... 158 5e-37
>emb|CBI27138.3| unnamed protein product [Vitis vinifera]
Length = 3960
Score = 169 bits (428), Expect = 2e-40
Identities = 78/103 (75%), Positives = 90/103 (87%)
Frame = -2
Query: 350 YCAFGCDMKKPFQGTLFRFPLRNVDQAAVSKLSRQAYSEDDISSMFVQLYEEGVFTLLFL 171
YCAFGCDMK PF GTLFRFPLRN DQAA+SKLSRQAY EDDISSMFVQLYEEGVF LLFL
Sbjct: 182 YCAFGCDMKHPFSGTLFRFPLRNADQAAISKLSRQAYLEDDISSMFVQLYEEGVFALLFL 241
Query: 170 KNIVSVEMYVWNPGASSPQRLYSCSVSSQNEETVWHRQALRRL 42
K+++S+EMY W+ G P+++YSC+VSS N++TV HRQAL RL
Sbjct: 242 KSVLSIEMYTWDAGEPDPRKIYSCTVSSANDDTVLHRQALLRL 284
Score = 67.0 bits (162), Expect = 2e-09
Identities = 29/87 (33%), Positives = 53/87 (60%)
Frame = -2
Query: 341 FGCDMKKPFQGTLFRFPLRNVDQAAVSKLSRQAYSEDDISSMFVQLYEEGVFTLLFLKNI 162
FGCD++ PF GTLFRFPLR+ A+ S++ ++ Y+ +D+ S+F E LLF++N+
Sbjct: 1051 FGCDLQNPFPGTLFRFPLRSASVASRSQIKKEGYAPEDVMSLFASFSEVVSEALLFVRNV 1110
Query: 161 VSVEMYVWNPGASSPQRLYSCSVSSQN 81
++ ++V Q ++ ++ Q+
Sbjct: 1111 KTISIFVKEETGCEMQLIHRIVMTEQS 1137
>ref|NP_197702.1| C3HC4-type RING finger domain-containing protein [Arabidopsis
thaliana] gi|9759369|dbj|BAB09828.1| unnamed protein
product [Arabidopsis thaliana]
gi|332005740|gb|AED93123.1| C3HC4-type RING finger
domain-containing protein [Arabidopsis thaliana]
Length = 4706
Score = 162 bits (411), Expect = 2e-38
Identities = 75/103 (72%), Positives = 88/103 (85%)
Frame = -2
Query: 350 YCAFGCDMKKPFQGTLFRFPLRNVDQAAVSKLSRQAYSEDDISSMFVQLYEEGVFTLLFL 171
YCAFGCDM+ PF GTLFRFPLRN +QAA S+LSRQAY EDDIS MF QL+EEGVF+LLFL
Sbjct: 171 YCAFGCDMRSPFNGTLFRFPLRNTEQAASSRLSRQAYFEDDISLMFDQLFEEGVFSLLFL 230
Query: 170 KNIVSVEMYVWNPGASSPQRLYSCSVSSQNEETVWHRQALRRL 42
K ++S+EMY W+ G S P++LYSCSVSS N +TVWHRQA+ RL
Sbjct: 231 KCVLSIEMYTWDDGDSEPKKLYSCSVSSPNNDTVWHRQAVLRL 273
Score = 59.7 bits (143), Expect = 2e-07
Identities = 28/79 (35%), Positives = 44/79 (55%)
Frame = -2
Query: 341 FGCDMKKPFQGTLFRFPLRNVDQAAVSKLSRQAYSEDDISSMFVQLYEEGVFTLLFLKNI 162
FGCD++ F GTLFRFPLRN A S + ++ Y+ +D+ S+F L+FL+N+
Sbjct: 1546 FGCDLEHTFPGTLFRFPLRNASVAPRSHIKKETYAPEDVLSLFTSFSGVVSEALIFLRNV 1605
Query: 161 VSVEMYVWNPGASSPQRLY 105
+V ++ Q L+
Sbjct: 1606 KTVSIFTKEGAGHEMQLLH 1624
>ref|XP_003556575.1| PREDICTED: sacsin-like [Glycine max]
Length = 4756
Score = 161 bits (408), Expect = 5e-38
Identities = 73/103 (70%), Positives = 89/103 (86%)
Frame = -2
Query: 350 YCAFGCDMKKPFQGTLFRFPLRNVDQAAVSKLSRQAYSEDDISSMFVQLYEEGVFTLLFL 171
YCAFGCDM+ PF GTLFRFPLRN DQAA SKLSRQAYS +DISSMFVQL+EEGV TLLFL
Sbjct: 175 YCAFGCDMQSPFSGTLFRFPLRNADQAAKSKLSRQAYSPEDISSMFVQLFEEGVLTLLFL 234
Query: 170 KNIVSVEMYVWNPGASSPQRLYSCSVSSQNEETVWHRQALRRL 42
K+++ +EMY+W+ G P++++SCSVSS ++TVWHRQ+L RL
Sbjct: 235 KSVLCIEMYLWDAGEPEPKKIHSCSVSSVTDDTVWHRQSLLRL 277
Score = 68.6 bits (166), Expect = 5e-10
Identities = 33/78 (42%), Positives = 49/78 (62%)
Frame = -2
Query: 341 FGCDMKKPFQGTLFRFPLRNVDQAAVSKLSRQAYSEDDISSMFVQLYEEGVFTLLFLKNI 162
FGCD++ PF GTLFRFPLR A+ S++ ++AY+ +D+ S+ E TLLFL+N+
Sbjct: 1545 FGCDLQHPFPGTLFRFPLRTAGLASRSQIKKEAYTPEDVRSLLAAFSEVVSETLLFLRNV 1604
Query: 161 VSVEMYVWNPGASSPQRL 108
S+ ++V G RL
Sbjct: 1605 KSISIFV-KEGTGQEMRL 1621
>ref|XP_003533689.1| PREDICTED: sacsin-like [Glycine max]
Length = 4760
Score = 161 bits (408), Expect = 5e-38
Identities = 74/103 (71%), Positives = 88/103 (85%)
Frame = -2
Query: 350 YCAFGCDMKKPFQGTLFRFPLRNVDQAAVSKLSRQAYSEDDISSMFVQLYEEGVFTLLFL 171
YCAFGCDM+ PF GTLFRFPLRN QAA SKLSRQAYS +DISSMFVQLYEEGV TLLFL
Sbjct: 175 YCAFGCDMQSPFSGTLFRFPLRNAYQAATSKLSRQAYSPEDISSMFVQLYEEGVLTLLFL 234
Query: 170 KNIVSVEMYVWNPGASSPQRLYSCSVSSQNEETVWHRQALRRL 42
K+++ +EMY+W+ G P++++SCSVSS ++TVWHRQAL RL
Sbjct: 235 KSVLCIEMYLWDAGEPEPKKIHSCSVSSVTDDTVWHRQALLRL 277
Score = 70.5 bits (171), Expect = 1e-10
Identities = 31/67 (46%), Positives = 47/67 (70%)
Frame = -2
Query: 341 FGCDMKKPFQGTLFRFPLRNVDQAAVSKLSRQAYSEDDISSMFVQLYEEGVFTLLFLKNI 162
FGCD++ PF GTLFRFPLR A+ S++ ++AY+ +D+ S+F E TLLFL+N+
Sbjct: 1546 FGCDLQHPFPGTLFRFPLRTAGVASRSQIKKEAYTPEDVRSLFAAFSEVVSETLLFLRNV 1605
Query: 161 VSVEMYV 141
S+ ++V
Sbjct: 1606 KSISIFV 1612
>ref|XP_002872036.1| zinc finger family protein [Arabidopsis lyrata subsp. lyrata]
gi|297317873|gb|EFH48295.1| zinc finger family protein
[Arabidopsis lyrata subsp. lyrata]
Length = 4711
Score = 158 bits (399), Expect = 5e-37
Identities = 73/103 (70%), Positives = 87/103 (84%)
Frame = -2
Query: 350 YCAFGCDMKKPFQGTLFRFPLRNVDQAAVSKLSRQAYSEDDISSMFVQLYEEGVFTLLFL 171
YCAFGCDM+ PF GTLFRFPLRN +QAA S+LSRQAY EDDIS MF QL+EEGVF+LLFL
Sbjct: 171 YCAFGCDMRSPFHGTLFRFPLRNPEQAASSRLSRQAYFEDDISLMFDQLFEEGVFSLLFL 230
Query: 170 KNIVSVEMYVWNPGASSPQRLYSCSVSSQNEETVWHRQALRRL 42
K ++S+EMY W+ G P++LYSCSVSS + +TVWHRQA+ RL
Sbjct: 231 KCVLSIEMYTWDDGDPEPKKLYSCSVSSPDNDTVWHRQAVLRL 273
Score = 59.7 bits (143), Expect = 2e-07
Identities = 28/79 (35%), Positives = 44/79 (55%)
Frame = -2
Query: 341 FGCDMKKPFQGTLFRFPLRNVDQAAVSKLSRQAYSEDDISSMFVQLYEEGVFTLLFLKNI 162
FGCD++ F GTLFRFPLRN A S + ++ Y+ +D+ S+F L+FL+N+
Sbjct: 1546 FGCDLEHTFPGTLFRFPLRNASVAPRSHIKKETYASEDVLSLFTSFSGVVSEALVFLRNV 1605
Query: 161 VSVEMYVWNPGASSPQRLY 105
+V ++ Q L+
Sbjct: 1606 KTVSIFTKEGAGHEMQLLH 1624