BLASTX nr result
ID: Coptis23_contig00017811
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Coptis23_contig00017811
(453 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_193558.3| starch synthase 4 [Arabidopsis thaliana] gi|122... 169 7e-55
ref|XP_002298514.1| predicted protein [Populus trichocarpa] gi|2... 166 2e-54
emb|CAB40375.1| starch synthase, isoform V [Vigna unguiculata] 169 4e-54
emb|CAA16796.1| starch synthase-like protein [Arabidopsis thalia... 163 4e-53
ref|XP_002519725.1| starch synthase, putative [Ricinus communis]... 160 3e-51
>ref|NP_193558.3| starch synthase 4 [Arabidopsis thaliana]
gi|122230204|sp|Q0WVX5.1|SSY4_ARATH RecName:
Full=Probable starch synthase 4,
chloroplastic/amyloplastic; Short=AtSS4; AltName:
Full=Soluble starch synthase IV; Flags: Precursor
gi|110741548|dbj|BAE98723.1| starch synthase-like
protein [Arabidopsis thaliana]
gi|332658615|gb|AEE84015.1| starch synthase 4
[Arabidopsis thaliana]
Length = 1040
Score = 169 bits (428), Expect(3) = 7e-55
Identities = 77/110 (70%), Positives = 91/110 (82%)
Frame = -3
Query: 451 SPTSQGLHIIHIAAEMAPVAKXXXXXXXXXXXGKALQKKGHLVEIVIPKYDCMEYDRVTD 272
SPTS GL+++HIAAEMAPVAK GKALQ+KGHLVEI++PKYDCM+YDRV D
Sbjct: 536 SPTSSGLYVVHIAAEMAPVAKVGGLGDVVAGLGKALQRKGHLVEIILPKYDCMQYDRVRD 595
Query: 271 LRALDMVLESYFDG*LFKNKVWVGVVEGLPVYFIEPQHPAKFFWRSNLWG 122
LRALD V+ESYFDG L+KNK+W+G VEGLPV+FIEPQHP+KFFWR +G
Sbjct: 596 LRALDTVVESYFDGKLYKNKIWIGTVEGLPVHFIEPQHPSKFFWRGQFYG 645
Score = 52.0 bits (123), Expect(3) = 7e-55
Identities = 23/30 (76%), Positives = 25/30 (83%)
Frame = -1
Query: 138 GQIYGEHDDFKHFSYFSHAALELFLQAGKK 49
GQ YGE DDF+ FSYFS AALEL LQ+GKK
Sbjct: 641 GQFYGEQDDFRRFSYFSRAALELLLQSGKK 670
Score = 38.9 bits (89), Expect(3) = 7e-55
Identities = 14/16 (87%), Positives = 16/16 (100%)
Frame = -2
Query: 53 KKPDILYCHDWQTAFV 6
KKPDI++CHDWQTAFV
Sbjct: 669 KKPDIIHCHDWQTAFV 684
>ref|XP_002298514.1| predicted protein [Populus trichocarpa] gi|222845772|gb|EEE83319.1|
predicted protein [Populus trichocarpa]
Length = 887
Score = 166 bits (421), Expect(3) = 2e-54
Identities = 78/110 (70%), Positives = 88/110 (80%)
Frame = -3
Query: 451 SPTSQGLHIIHIAAEMAPVAKXXXXXXXXXXXGKALQKKGHLVEIVIPKYDCMEYDRVTD 272
SP S GL IIHIAAEMAPVAK KALQK+GHLVEIV+PKYDCM+YDR+ +
Sbjct: 384 SPKSSGLSIIHIAAEMAPVAKVGGLGDVVTGLCKALQKRGHLVEIVLPKYDCMQYDRIHN 443
Query: 271 LRALDMVLESYFDG*LFKNKVWVGVVEGLPVYFIEPQHPAKFFWRSNLWG 122
LRALD+V+ESYFDG L+KNK+WVG VEGLPVYFIEPQHP KFFWR +G
Sbjct: 444 LRALDVVVESYFDGKLYKNKIWVGTVEGLPVYFIEPQHPEKFFWRGQFYG 493
Score = 53.5 bits (127), Expect(3) = 2e-54
Identities = 23/30 (76%), Positives = 26/30 (86%)
Frame = -1
Query: 138 GQIYGEHDDFKHFSYFSHAALELFLQAGKK 49
GQ YGEHDDF+ FS+FS AALEL LQ+GKK
Sbjct: 489 GQFYGEHDDFRRFSFFSRAALELLLQSGKK 518
Score = 38.9 bits (89), Expect(3) = 2e-54
Identities = 14/16 (87%), Positives = 16/16 (100%)
Frame = -2
Query: 53 KKPDILYCHDWQTAFV 6
KKPDI++CHDWQTAFV
Sbjct: 517 KKPDIIHCHDWQTAFV 532
>emb|CAB40375.1| starch synthase, isoform V [Vigna unguiculata]
Length = 874
Score = 169 bits (427), Expect(3) = 4e-54
Identities = 78/110 (70%), Positives = 89/110 (80%)
Frame = -3
Query: 451 SPTSQGLHIIHIAAEMAPVAKXXXXXXXXXXXGKALQKKGHLVEIVIPKYDCMEYDRVTD 272
S TS GL++IHIAAEMAPVAK KALQKKGHLVEI++PKYDCM+YDR+ D
Sbjct: 371 SATSPGLYVIHIAAEMAPVAKVGGLGDVISGLSKALQKKGHLVEIILPKYDCMQYDRIGD 430
Query: 271 LRALDMVLESYFDG*LFKNKVWVGVVEGLPVYFIEPQHPAKFFWRSNLWG 122
LRALD+V+ESYFDG LFKNK+WVG VEGLPVYFIEP HP KFFWR + +G
Sbjct: 431 LRALDVVIESYFDGQLFKNKIWVGTVEGLPVYFIEPHHPGKFFWRGDYYG 480
Score = 50.1 bits (118), Expect(3) = 4e-54
Identities = 22/30 (73%), Positives = 23/30 (76%)
Frame = -1
Query: 138 GQIYGEHDDFKHFSYFSHAALELFLQAGKK 49
G YG HDDF+ FSYFS AALE LQAGKK
Sbjct: 476 GDYYGAHDDFRRFSYFSRAALEFLLQAGKK 505
Score = 38.5 bits (88), Expect(3) = 4e-54
Identities = 13/16 (81%), Positives = 16/16 (100%)
Frame = -2
Query: 53 KKPDILYCHDWQTAFV 6
KKPDI++CHDWQTAF+
Sbjct: 504 KKPDIIHCHDWQTAFI 519
>emb|CAA16796.1| starch synthase-like protein [Arabidopsis thaliana]
gi|7268617|emb|CAB78826.1| starch synthase-like protein
[Arabidopsis thaliana]
Length = 1071
Score = 163 bits (413), Expect(3) = 4e-53
Identities = 74/108 (68%), Positives = 89/108 (82%)
Frame = -3
Query: 445 TSQGLHIIHIAAEMAPVAKXXXXXXXXXXXGKALQKKGHLVEIVIPKYDCMEYDRVTDLR 266
+S GL+++HIAAEMAPVAK GKALQ+KGHLVEI++PKYDCM+YDRV DLR
Sbjct: 541 SSSGLYVVHIAAEMAPVAKVGGLGDVVAGLGKALQRKGHLVEIILPKYDCMQYDRVRDLR 600
Query: 265 ALDMVLESYFDG*LFKNKVWVGVVEGLPVYFIEPQHPAKFFWRSNLWG 122
ALD V+ESYFDG L+KNK+W+G VEGLPV+FIEPQHP+KFFWR +G
Sbjct: 601 ALDTVVESYFDGKLYKNKIWIGTVEGLPVHFIEPQHPSKFFWRGQFYG 648
Score = 52.0 bits (123), Expect(3) = 4e-53
Identities = 23/30 (76%), Positives = 25/30 (83%)
Frame = -1
Query: 138 GQIYGEHDDFKHFSYFSHAALELFLQAGKK 49
GQ YGE DDF+ FSYFS AALEL LQ+GKK
Sbjct: 644 GQFYGEQDDFRRFSYFSRAALELLLQSGKK 673
Score = 38.9 bits (89), Expect(3) = 4e-53
Identities = 14/16 (87%), Positives = 16/16 (100%)
Frame = -2
Query: 53 KKPDILYCHDWQTAFV 6
KKPDI++CHDWQTAFV
Sbjct: 672 KKPDIIHCHDWQTAFV 687
>ref|XP_002519725.1| starch synthase, putative [Ricinus communis]
gi|223541142|gb|EEF42698.1| starch synthase, putative
[Ricinus communis]
Length = 998
Score = 160 bits (406), Expect(3) = 3e-51
Identities = 73/110 (66%), Positives = 88/110 (80%)
Frame = -3
Query: 451 SPTSQGLHIIHIAAEMAPVAKXXXXXXXXXXXGKALQKKGHLVEIVIPKYDCMEYDRVTD 272
SP+S GLH+IHIAAEMAPVAK GKALQK+GHLVEI++PKYDCM+Y+ + +
Sbjct: 494 SPSSPGLHVIHIAAEMAPVAKVGGLGDVVAGLGKALQKRGHLVEIILPKYDCMQYNGIGN 553
Query: 271 LRALDMVLESYFDG*LFKNKVWVGVVEGLPVYFIEPQHPAKFFWRSNLWG 122
LRALD+ +ESYFDG L+KNK+WVG +EGLPVYFIEP HP KFFWR +G
Sbjct: 554 LRALDVTVESYFDGKLYKNKIWVGTIEGLPVYFIEPHHPDKFFWRGQFYG 603
Score = 52.0 bits (123), Expect(3) = 3e-51
Identities = 23/30 (76%), Positives = 25/30 (83%)
Frame = -1
Query: 138 GQIYGEHDDFKHFSYFSHAALELFLQAGKK 49
GQ YGEHDDFK FS+FS AALEL Q+GKK
Sbjct: 599 GQFYGEHDDFKRFSFFSRAALELLHQSGKK 628
Score = 35.0 bits (79), Expect(3) = 3e-51
Identities = 13/16 (81%), Positives = 15/16 (93%)
Frame = -2
Query: 53 KKPDILYCHDWQTAFV 6
KKPDI++ HDWQTAFV
Sbjct: 627 KKPDIIHSHDWQTAFV 642