BLASTX nr result

ID: Coptis23_contig00017798 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00017798
         (704 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|ACH87172.1| zinc finger protein LSD2-like protein [Camellia s...   113   3e-23
ref|XP_002273964.1| PREDICTED: protein LOL2 [Vitis vinifera] gi|...   102   7e-20
ref|XP_002519059.1| conserved hypothetical protein [Ricinus comm...   102   1e-19
ref|XP_003529323.1| PREDICTED: protein LOL2-like [Glycine max]        100   2e-19
ref|XP_003566876.1| PREDICTED: uncharacterized protein LOC100840...    95   1e-17

>gb|ACH87172.1| zinc finger protein LSD2-like protein [Camellia sinensis]
          Length = 236

 Score =  113 bits (283), Expect = 3e-23
 Identities = 68/192 (35%), Positives = 90/192 (46%), Gaps = 10/192 (5%)
 Frame = +3

Query: 36  DSPPPGWES---EKQEANSDSPPPPGFESNENN-------SPSEKQSSTLVVVVDSNKKN 185
           D PPPGW     +K+E + D  PPPG++S   +       +P+       V     N  +
Sbjct: 50  DGPPPGWTQIAVKKEEEDDDDGPPPGWQSIPPSQPPTITPAPTTPPPPPAVASGSGNAAH 109

Query: 186 YSPSQHSPLPPGWEEPTTSPCQQHXXXXXXXXXXXXXXXXXXGIPTREMGQMICGVCRSL 365
               Q  P   G  +   +  QQ                        EMGQM+CG C+ L
Sbjct: 110 TQLQQQPPKQEGSAKAARTQLQQELPKQEAV----------------EMGQMVCGSCQEL 153

Query: 366 ISYPKGAGRVKCPGCQTVNHVLEAQQVGLVKCGSCSVLLMYKYEXXXXXXXXXXXXTQIG 545
           +SYP+GA  V+C  CQTVN+ LE  +VG VKCG C+VLLMY Y             T+IG
Sbjct: 154 LSYPRGARLVRCLCCQTVNYCLEEHEVGQVKCGGCAVLLMYPYGAPFVKCSSCCFVTEIG 213

Query: 546 VDNKRPLISVQQ 581
             N+RP +SVQQ
Sbjct: 214 EHNRRPPLSVQQ 225


>ref|XP_002273964.1| PREDICTED: protein LOL2 [Vitis vinifera]
           gi|302144197|emb|CBI23324.3| unnamed protein product
           [Vitis vinifera]
          Length = 141

 Score =  102 bits (254), Expect = 7e-20
 Identities = 52/93 (55%), Positives = 61/93 (65%), Gaps = 1/93 (1%)
 Frame = +3

Query: 327 EMGQMICGVCRSLISYPKGAGRVKCPGCQTVNHVLEAQQVGLVKCGSCSVLLMYKYEXXX 506
           EM QM+CG CR L+SYP+G   V+C  CQTVN VLEA QVG VKCGSC+VLLMY Y    
Sbjct: 45  EMAQMVCGSCRRLLSYPQGTRHVECSCCQTVNFVLEAHQVGQVKCGSCAVLLMYPYGAPS 104

Query: 507 XXXXXXXXXTQIGVDNKRPLISVQQVHS-PSHN 602
                    T+IGV N+R  +SVQQ H  P H+
Sbjct: 105 VRCSSCRFVTEIGVHNRRLPLSVQQGHQLPLHS 137


>ref|XP_002519059.1| conserved hypothetical protein [Ricinus communis]
           gi|223541722|gb|EEF43270.1| conserved hypothetical
           protein [Ricinus communis]
          Length = 142

 Score =  102 bits (253), Expect = 1e-19
 Identities = 48/93 (51%), Positives = 58/93 (62%)
 Frame = +3

Query: 318 PTREMGQMICGVCRSLISYPKGAGRVKCPGCQTVNHVLEAQQVGLVKCGSCSVLLMYKYE 497
           P+ EM QM+CG CR+L+SYP+GA  V+C  CQ VN VLEA +VG V CG C +LLMY Y 
Sbjct: 47  PSSEMAQMVCGSCRTLLSYPRGARHVQCSSCQMVNFVLEAHEVGQVNCGKCEILLMYPYP 106

Query: 498 XXXXXXXXXXXXTQIGVDNKRPLISVQQVHSPS 596
                       T+IG  NKRP  SV Q H P+
Sbjct: 107 ASSVRCSSCCSVTEIGAHNKRPPWSVIQGHPPN 139


>ref|XP_003529323.1| PREDICTED: protein LOL2-like [Glycine max]
          Length = 128

 Score =  100 bits (250), Expect = 2e-19
 Identities = 53/90 (58%), Positives = 58/90 (64%), Gaps = 2/90 (2%)
 Frame = +3

Query: 318 PTREMG--QMICGVCRSLISYPKGAGRVKCPGCQTVNHVLEAQQVGLVKCGSCSVLLMYK 491
           P R  G  QM+CG CR L+SYP+GA  VKC  CQTVN VLEA QVG VKCGSC+VLLMY 
Sbjct: 29  PPRPSGWAQMVCGSCRRLLSYPRGAKHVKCSCCQTVNIVLEADQVGQVKCGSCAVLLMYP 88

Query: 492 YEXXXXXXXXXXXXTQIGVDNKRPLISVQQ 581
           Y             T+IG  NKRP  SVQQ
Sbjct: 89  YGASQVRCSSCRFVTEIGAHNKRPPWSVQQ 118


>ref|XP_003566876.1| PREDICTED: uncharacterized protein LOC100840817 [Brachypodium
            distachyon]
          Length = 939

 Score = 95.1 bits (235), Expect = 1e-17
 Identities = 59/182 (32%), Positives = 83/182 (45%)
 Frame = +3

Query: 48   PGWESEKQEANSDSPPPPGFESNENNSPSEKQSSTLVVVVDSNKKNYSPSQHSPLPPGWE 227
            P  +S   E+   +PP    ++ + N   E  ++ L +     + +    QH   PP  +
Sbjct: 762  PATKSVAVESEERAPPQLALQAVDTNM--ECATTLLTLSKKEGEDSLPQPQH---PPCSQ 816

Query: 228  EPTTSPCQQHXXXXXXXXXXXXXXXXXXGIPTREMGQMICGVCRSLISYPKGAGRVKCPG 407
                +PC                         +EMGQM+CG CR L++YP+GA  V+C G
Sbjct: 817  TVQAAPCSLEALELLPPPPPPFL--------NKEMGQMVCGCCRELLAYPRGAVHVQCAG 868

Query: 408  CQTVNHVLEAQQVGLVKCGSCSVLLMYKYEXXXXXXXXXXXXTQIGVDNKRPLISVQQVH 587
            C T+N VLEA +VG V CG C  LLMY +             T+IG    RP ISV+QV 
Sbjct: 869  CLTINLVLEAHEVGKVHCGRCETLLMYPFGAPAVKCSLCLFVTEIGERKVRPRISVEQVV 928

Query: 588  SP 593
             P
Sbjct: 929  PP 930


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