BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00017793
         (1296 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002321560.1| predicted protein [Populus trichocarpa] gi|2...   586   e-165
ref|XP_002511467.1| pentatricopeptide repeat-containing protein,...   577   e-162
ref|XP_004152457.1| PREDICTED: pentatricopeptide repeat-containi...   565   e-159
sp|Q9S7R4.1|PP125_ARATH RecName: Full=Pentatricopeptide repeat-c...   550   e-154
ref|XP_003540784.1| PREDICTED: pentatricopeptide repeat-containi...   548   e-153

>ref|XP_002321560.1| predicted protein [Populus trichocarpa] gi|222868556|gb|EEF05687.1|
            predicted protein [Populus trichocarpa]
          Length = 491

 Score =  586 bits (1511), Expect = e-165
 Identities = 279/403 (69%), Positives = 337/403 (83%)
 Frame = +3

Query: 87   IINLILKTQNHKTLTQTLDSLNPRWSPPLVNHILKHLWNDGPKALHFFKHLDTHHPTYTH 266
            +  LIL + N + L QTL S   +W+P LVN ILK LWNDGPKAL FF  L +HHP+Y+H
Sbjct: 41   LATLILTSSNPQALAQTLHSPTIQWTPQLVNTILKRLWNDGPKALQFFNLL-SHHPSYSH 99

Query: 267  CPTSYDHAIDLSGRLRHYKTLWYLVSRMWSLRIGPTPKTFAVIIERYVSVGKAERAVKVF 446
             P+SYDHAID+S RLR   +L  LV RM S R+GPTPKTFA+I ERY S GK  RAVKVF
Sbjct: 100  HPSSYDHAIDISARLRDSPSLRSLVYRMRSARLGPTPKTFAIIAERYASAGKPHRAVKVF 159

Query: 447  LSMHEHGCVQNLRSFNTLLDVLCKSRRVEMAYSFFKVFRNRFRADTISYNIIANGWCLVK 626
            LSMH+ GC Q+L+SFNT+LDVLCKS+RVEMAY+ FKVF+ +FRAD +SYN++ NGWCL+K
Sbjct: 160  LSMHQFGCFQDLQSFNTILDVLCKSKRVEMAYNLFKVFKGKFRADCVSYNVMVNGWCLIK 219

Query: 627  RTPRALEILKEMVERGNEPNVSTYNILLKGFFRVGQIKEAWEFFLQMKKRGCVIDVVTYT 806
            RT +ALE+LKEMV+RG  PN+++YN +LKG+FR GQI EAW+FFL+MKKR C IDV+TYT
Sbjct: 220  RTNKALEMLKEMVKRGLTPNLTSYNTMLKGYFRAGQINEAWDFFLEMKKRDCEIDVITYT 279

Query: 807  TLVHGFGVVGEIAKARKVFNGMIKEGCLPSVATYTAFIQVLCKKDNVENAIVVFEEMLRK 986
            T++HGFGV GEI +ARKVF+ M+K+G LPSVATY AFIQVLCKKDNV+NAIV+FEEM+ K
Sbjct: 280  TVIHGFGVAGEIKRARKVFDTMVKKGVLPSVATYNAFIQVLCKKDNVDNAIVIFEEMVVK 339

Query: 987  GYVPNVTTYAVVIRGLCHAGDMNRAMEFMERMKDDGCEANVQIYNVVIRYFIDAGDLEKA 1166
            GYVPN  TY +VIRGLCH G+M RAMEFM RMKDDGCE NVQ YN+VIRYF D G+++KA
Sbjct: 340  GYVPNSITYNLVIRGLCHRGEMERAMEFMGRMKDDGCEPNVQTYNLVIRYFCDEGEIDKA 399

Query: 1167 LEIFEKMCSGDCLPNLDTYNILISTMFVRKKADDLVLAGKLLV 1295
            L++F+KM SGDCLPNLDTYNILIS MFVRKK+DDL++AG LL+
Sbjct: 400  LDLFQKMTSGDCLPNLDTYNILISAMFVRKKSDDLLVAGNLLI 442


>ref|XP_002511467.1| pentatricopeptide repeat-containing protein, putative [Ricinus
            communis] gi|223550582|gb|EEF52069.1| pentatricopeptide
            repeat-containing protein, putative [Ricinus communis]
          Length = 482

 Score =  577 bits (1486), Expect = e-162
 Identities = 273/432 (63%), Positives = 346/432 (80%), Gaps = 3/432 (0%)
 Frame = +3

Query: 9    TQFLKPQH---LTLHXXXXXXXXXXXXXXIINLILKTQNHKTLTQTLDSLNPRWSPPLVN 179
            TQ LK +H   L +               +  LIL + N +TL ++L S + +W+P LVN
Sbjct: 3    TQLLKTRHSHLLRIRHHSTTTTSPPEATTLAALILNSTNSQTLAESLHSPSIQWTPQLVN 62

Query: 180  HILKHLWNDGPKALHFFKHLDTHHPTYTHCPTSYDHAIDLSGRLRHYKTLWYLVSRMWSL 359
             ILK LWN GPKALHFFK L +HHP+Y H  +S+DHAID+  RLR ++TLW+LVSRM S 
Sbjct: 63   TILKRLWNHGPKALHFFKIL-SHHPSYCHQASSFDHAIDICARLRDFRTLWFLVSRMRSC 121

Query: 360  RIGPTPKTFAVIIERYVSVGKAERAVKVFLSMHEHGCVQNLRSFNTLLDVLCKSRRVEMA 539
            R+GP+P+TFA+I ERY ++GK  RAV VF+SMHE+GC Q+L SFNT+LDVLCKS+RVEMA
Sbjct: 122  RLGPSPRTFAIIAERYAAMGKPHRAVTVFMSMHEYGCFQDLSSFNTILDVLCKSKRVEMA 181

Query: 540  YSFFKVFRNRFRADTISYNIIANGWCLVKRTPRALEILKEMVERGNEPNVSTYNILLKGF 719
            Y+ FK  + +F+AD +SYNII NGWCL+KRTP+ALE+LKEMVERG  PN++TYNI+L G+
Sbjct: 182  YNLFKALKGKFKADCVSYNIIVNGWCLIKRTPKALEMLKEMVERGLTPNLTTYNIMLNGY 241

Query: 720  FRVGQIKEAWEFFLQMKKRGCVIDVVTYTTLVHGFGVVGEIAKARKVFNGMIKEGCLPSV 899
            FR GQ  EAW FFL+MKKR C IDVVTYT+++HG GVVGEI +AR VFN M+K+G LPSV
Sbjct: 242  FRAGQTNEAWGFFLEMKKRKCDIDVVTYTSVIHGLGVVGEIKRARNVFNQMVKDGVLPSV 301

Query: 900  ATYTAFIQVLCKKDNVENAIVVFEEMLRKGYVPNVTTYAVVIRGLCHAGDMNRAMEFMER 1079
            AT+ A IQ+LCKKD+VENAI++FEEM+++GYVPN  TY +VIRGLCH G+M RAME MER
Sbjct: 302  ATFNALIQILCKKDSVENAILIFEEMVKRGYVPNSITYNLVIRGLCHVGEMQRAMELMER 361

Query: 1080 MKDDGCEANVQIYNVVIRYFIDAGDLEKALEIFEKMCSGDCLPNLDTYNILISTMFVRKK 1259
            M+DD CE NVQ YN++IRYF DAG++EK L++F+KM +GDCLPNLDTYNILI++MFVRK 
Sbjct: 362  MEDDDCEPNVQTYNILIRYFCDAGEIEKGLDLFQKMGNGDCLPNLDTYNILINSMFVRKN 421

Query: 1260 ADDLVLAGKLLV 1295
            +D+L++AGKLLV
Sbjct: 422  SDNLLVAGKLLV 433


>ref|XP_004152457.1| PREDICTED: pentatricopeptide repeat-containing protein At1g74900,
            mitochondrial-like [Cucumis sativus]
            gi|449487784|ref|XP_004157799.1| PREDICTED:
            pentatricopeptide repeat-containing protein At1g74900,
            mitochondrial-like [Cucumis sativus]
          Length = 502

 Score =  565 bits (1457), Expect = e-159
 Identities = 275/404 (68%), Positives = 340/404 (84%), Gaps = 1/404 (0%)
 Frame = +3

Query: 87   IINLILKTQNHKTLTQTLDSLNPRWSPPLVNHILKHLWNDGPKALHFFKHLDTHHPTYTH 266
            I  L+L++ + K+L  +L  L  +++P LV+ +LK LW  GPKAL FFKHL+ +HP+Y H
Sbjct: 53   IATLVLES-DPKSLRGSLHGLQLQFTPELVDKVLKRLWFHGPKALQFFKHLE-YHPSYAH 110

Query: 267  CPTSYDHAIDLSGRLRHYKTLWYLVSRMWSLRIGPTPKTFAVIIERYVSVGKAERAVKVF 446
              +S+DHAID++GR+R YKT+W LV+RM + RIGP+ KTFA+I ER+V+ GK +RA+KVF
Sbjct: 111  SASSFDHAIDIAGRMRDYKTVWALVARMRARRIGPSSKTFAIIAERFVAAGKPDRAIKVF 170

Query: 447  LSMHEHGCVQNLRSFNTLLDVLCKSRRVEMAYS-FFKVFRNRFRADTISYNIIANGWCLV 623
            LSM EHGC Q+L SFNT+LD+LCKS+RVEMAY+  FKV R +F+AD +SYNIIANGWCL+
Sbjct: 171  LSMREHGCPQDLHSFNTILDILCKSKRVEMAYNNLFKVLRGKFKADVVSYNIIANGWCLI 230

Query: 624  KRTPRALEILKEMVERGNEPNVSTYNILLKGFFRVGQIKEAWEFFLQMKKRGCVIDVVTY 803
            KRTP+ALE+LKEMVERG  P ++TYNILLKG+FR GQ+KEAWEFFLQMK+R   IDVVTY
Sbjct: 231  KRTPKALEVLKEMVERGLTPTITTYNILLKGYFRAGQLKEAWEFFLQMKEREVEIDVVTY 290

Query: 804  TTLVHGFGVVGEIAKARKVFNGMIKEGCLPSVATYTAFIQVLCKKDNVENAIVVFEEMLR 983
            TT+VHGFGVVGEI +ARKVFN M+ EG LPS ATY A IQVLCKKD+VENA+++FEEM++
Sbjct: 291  TTMVHGFGVVGEIKRARKVFNEMVGEGILPSTATYNAMIQVLCKKDSVENAVLMFEEMVK 350

Query: 984  KGYVPNVTTYAVVIRGLCHAGDMNRAMEFMERMKDDGCEANVQIYNVVIRYFIDAGDLEK 1163
            KGYVPN+TTY VVIRGL HAG+M++AMEF+ERMK DGCE NVQ YNV IRYF DAGD+EK
Sbjct: 351  KGYVPNLTTYNVVIRGLFHAGNMDKAMEFIERMKTDGCEPNVQTYNVAIRYFCDAGDVEK 410

Query: 1164 ALEIFEKMCSGDCLPNLDTYNILISTMFVRKKADDLVLAGKLLV 1295
             L +FEKM  G  LPNLDTYN+LIS MFVRKK++DLV+AGKLL+
Sbjct: 411  GLSMFEKMGQGS-LPNLDTYNVLISAMFVRKKSEDLVVAGKLLL 453


>sp|Q9S7R4.1|PP125_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g74900,
            mitochondrial; AltName: Full=Protein ORGANELLE TRANSCRIPT
            PROCESSING DEFECT 43; Flags: Precursor
            gi|5882733|gb|AAD55286.1|AC008263_17 Contains a PF|01535
            DUF17 domain [Arabidopsis thaliana]
            gi|12323885|gb|AAG51911.1|AC013258_5 hypothetical
            protein; 69434-67986 [Arabidopsis thaliana]
          Length = 482

 Score =  550 bits (1418), Expect = e-154
 Identities = 261/405 (64%), Positives = 323/405 (79%), Gaps = 2/405 (0%)
 Frame = +3

Query: 87   IINLILKTQN--HKTLTQTLDSLNPRWSPPLVNHILKHLWNDGPKALHFFKHLDTHHPTY 260
            I  LIL + N  H+     L +    W+P LVN +LK LWN GPKAL FF  LD HH  Y
Sbjct: 28   IAKLILSSPNTTHQDDQFLLSTKTTPWTPNLVNSVLKRLWNHGPKALQFFHFLDNHHREY 87

Query: 261  THCPTSYDHAIDLSGRLRHYKTLWYLVSRMWSLRIGPTPKTFAVIIERYVSVGKAERAVK 440
             H  +S+D AID++ RL  + T+W L+ RM SLRIGP+PKTFA++ ERY S GK ++AVK
Sbjct: 88   VHDASSFDLAIDIAARLHLHPTVWSLIHRMRSLRIGPSPKTFAIVAERYASAGKPDKAVK 147

Query: 441  VFLSMHEHGCVQNLRSFNTLLDVLCKSRRVEMAYSFFKVFRNRFRADTISYNIIANGWCL 620
            +FL+MHEHGC Q+L SFNT+LDVLCKS+RVE AY  F+  R RF  DT++YN+I NGWCL
Sbjct: 148  LFLNMHEHGCFQDLASFNTILDVLCKSKRVEKAYELFRALRGRFSVDTVTYNVILNGWCL 207

Query: 621  VKRTPRALEILKEMVERGNEPNVSTYNILLKGFFRVGQIKEAWEFFLQMKKRGCVIDVVT 800
            +KRTP+ALE+LKEMVERG  PN++TYN +LKGFFR GQI+ AWEFFL+MKKR C IDVVT
Sbjct: 208  IKRTPKALEVLKEMVERGINPNLTTYNTMLKGFFRAGQIRHAWEFFLEMKKRDCEIDVVT 267

Query: 801  YTTLVHGFGVVGEIAKARKVFNGMIKEGCLPSVATYTAFIQVLCKKDNVENAIVVFEEML 980
            YTT+VHGFGV GEI +AR VF+ MI+EG LPSVATY A IQVLCKKDNVENA+V+FEEM+
Sbjct: 268  YTTVVHGFGVAGEIKRARNVFDEMIREGVLPSVATYNAMIQVLCKKDNVENAVVMFEEMV 327

Query: 981  RKGYVPNVTTYAVVIRGLCHAGDMNRAMEFMERMKDDGCEANVQIYNVVIRYFIDAGDLE 1160
            R+GY PNVTTY V+IRGL HAG+ +R  E M+RM+++GCE N Q YN++IRY+ +  ++E
Sbjct: 328  RRGYEPNVTTYNVLIRGLFHAGEFSRGEELMQRMENEGCEPNFQTYNMMIRYYSECSEVE 387

Query: 1161 KALEIFEKMCSGDCLPNLDTYNILISTMFVRKKADDLVLAGKLLV 1295
            KAL +FEKM SGDCLPNLDTYNILIS MFVRK+++D+V+AGKLL+
Sbjct: 388  KALGLFEKMGSGDCLPNLDTYNILISGMFVRKRSEDMVVAGKLLL 432


>ref|XP_003540784.1| PREDICTED: pentatricopeptide repeat-containing protein At1g74900,
            mitochondrial-like [Glycine max]
          Length = 495

 Score =  548 bits (1411), Expect = e-153
 Identities = 260/404 (64%), Positives = 326/404 (80%), Gaps = 1/404 (0%)
 Frame = +3

Query: 87   IINLILKTQNHKTLTQTLDSLNPRWSPPLVNHILKHLWNDGPKALHFFKHLDTHHPTYTH 266
            I  L+L++ + +T+++ L     +W+P LVN ++K LWN GPKAL FFKHLD HHP+YTH
Sbjct: 44   IAKLVLES-DPRTVSEALTKPTIQWTPDLVNKVMKRLWNHGPKALQFFKHLDRHHPSYTH 102

Query: 267  CPTSYDHAIDLSGRLRHYKTLWYLVSRMWSLRIGPTPKTFAVIIERYVSVGKAERAVKVF 446
             P+S+DHA+D++ R+R + + W LV RM SLR+GP+PKT A++ ERY S GK  RAV+ F
Sbjct: 103  SPSSFDHAVDIAARMRDFNSAWALVGRMRSLRLGPSPKTLAILAERYASNGKPHRAVRTF 162

Query: 447  LSMHEHGCVQNLRSFNTLLDVLCKSRRVEMAYSFFKVFRNRFRADTISYNIIANGWCLVK 626
            LSM EHG  Q+L SFNTLLD+LCKS+RVE A+S  K   +RFR DT++YNI+ANG+CL+K
Sbjct: 163  LSMAEHGIRQDLHSFNTLLDILCKSKRVETAHSLLKTLTSRFRPDTVTYNILANGYCLIK 222

Query: 627  RTPRALEILKEMVERGNEPNVSTYNILLKGFFRVGQIKEAWEFFLQMKKRGCVIDVVTYT 806
            RTP AL +LKEMV+RG EP + TYN +LKG+FR  QIKEAWEF+L+MKKR C IDVVTYT
Sbjct: 223  RTPMALRVLKEMVQRGIEPTMVTYNTMLKGYFRSNQIKEAWEFYLEMKKRKCEIDVVTYT 282

Query: 807  TLVHGFGVVGEIAKARKVFNGMIKEGCLPSVATYTAFIQVLCKKDNVENAIVVFEEMLRK 986
            T++HGFGV G++ KA++VF+ M+KEG +P+VATY A IQVLCKKD+VENA+VVFEEM R+
Sbjct: 283  TVIHGFGVAGDVKKAKRVFHEMVKEGVVPNVATYNALIQVLCKKDSVENAVVVFEEMARE 342

Query: 987  GY-VPNVTTYAVVIRGLCHAGDMNRAMEFMERMKDDGCEANVQIYNVVIRYFIDAGDLEK 1163
            G  VPNV TY VVIRGLCH GDM RA+ FMERM + G  A VQ YNVVIRYF DAG++EK
Sbjct: 343  GVCVPNVVTYNVVIRGLCHVGDMERALGFMERMGEHGLRACVQTYNVVIRYFCDAGEVEK 402

Query: 1164 ALEIFEKMCSGDCLPNLDTYNILISTMFVRKKADDLVLAGKLLV 1295
            ALE+F KM  G CLPNLDTYN+LIS MFVRKK++DLV+AGKLL+
Sbjct: 403  ALEVFGKMGDGSCLPNLDTYNVLISAMFVRKKSEDLVVAGKLLM 446