BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00017761
         (411 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002534949.1| conserved hypothetical protein [Ricinus comm...    88   3e-28
ref|XP_002527161.1| cytochrome C oxidase, subunit II, putative [...   109   2e-22
gb|ABV23661.1| cytochrome oxidase subunit 2 [Boehmeria nivea] gi...    72   6e-11
ref|XP_002863428.1| hypothetical protein ARALYDRAFT_356389 [Arab...    51   2e-08
ref|YP_004927630.1| hypothetical protein AnruMp28 (mitochondrion...    44   1e-07

>ref|XP_002534949.1| conserved hypothetical protein [Ricinus communis]
           gi|223524315|gb|EEF27434.1| conserved hypothetical
           protein [Ricinus communis]
          Length = 90

 Score = 88.2 bits (217), Expect(2) = 3e-28
 Identities = 44/46 (95%), Positives = 44/46 (95%)
 Frame = -2

Query: 278 MPSTRALLATNHSLAGRSGSAFQVRYPNRLLCSTGSLAPSSIFSTA 141
           MPSTRALLATNHSLAGR GSAFQVRYPNRLLCSTGSLAPSSI STA
Sbjct: 1   MPSTRALLATNHSLAGRLGSAFQVRYPNRLLCSTGSLAPSSILSTA 46



 Score = 62.0 bits (149), Expect(2) = 3e-28
 Identities = 29/31 (93%), Positives = 30/31 (96%)
 Frame = -1

Query: 96  LLLGWLAPRVVRLSQSGLSSRPMFPGARIKA 4
           LLLGWLAP VVRLSQSGLSSRPMFPGAR+KA
Sbjct: 60  LLLGWLAPEVVRLSQSGLSSRPMFPGARVKA 90


>ref|XP_002527161.1| cytochrome C oxidase, subunit II, putative [Ricinus communis]
           gi|223533482|gb|EEF35227.1| cytochrome C oxidase,
           subunit II, putative [Ricinus communis]
          Length = 139

 Score =  109 bits (273), Expect = 2e-22
 Identities = 50/59 (84%), Positives = 54/59 (91%)
 Frame = +1

Query: 25  KHRPTAEPTLAQPHHPGCEPPKKQAITVSGWSCREPRSKAVEKIEEGARLPVEQRRRLG 201
           KHRPTAE TLAQPHHPGC+PPKKQ IT S WSCREPRSKAV+KI+EGARL VEQRR+LG
Sbjct: 81  KHRPTAESTLAQPHHPGCDPPKKQDITASDWSCREPRSKAVDKIKEGARLLVEQRRQLG 139


>gb|ABV23661.1| cytochrome oxidase subunit 2 [Boehmeria nivea]
           gi|157102084|gb|ABV23662.1| cytochrome oxidase subunit 2
           [Boehmeria nivea] gi|157102086|gb|ABV23663.1| cytochrome
           oxidase subunit 2 [Boehmeria nivea]
          Length = 310

 Score = 71.6 bits (174), Expect = 6e-11
 Identities = 33/35 (94%), Positives = 34/35 (97%)
 Frame = +2

Query: 2   HAFMRAPGNIGRLLSPLWLSRTTRGASHPRSKLLQ 106
           HAFMRAPGNIGR+ SPLWLSRTTRGASHPRSKLLQ
Sbjct: 260 HAFMRAPGNIGRVPSPLWLSRTTRGASHPRSKLLQ 294


>ref|XP_002863428.1| hypothetical protein ARALYDRAFT_356389 [Arabidopsis lyrata subsp.
           lyrata] gi|297309263|gb|EFH39687.1| hypothetical protein
           ARALYDRAFT_356389 [Arabidopsis lyrata subsp. lyrata]
          Length = 257

 Score = 50.8 bits (120), Expect(2) = 2e-08
 Identities = 23/26 (88%), Positives = 26/26 (100%)
 Frame = +3

Query: 45  AHSGSAAPPGVRATQEASYYSERLEL 122
           +HSGSAAPPGV+AT+EASYYSERLEL
Sbjct: 232 SHSGSAAPPGVQATREASYYSERLEL 257



 Score = 32.3 bits (72), Expect(2) = 2e-08
 Identities = 14/15 (93%), Positives = 14/15 (93%)
 Frame = +2

Query: 2   HAFMRAPGNIGRLLS 46
           HAF RAPGNIGRLLS
Sbjct: 218 HAFTRAPGNIGRLLS 232


>ref|YP_004927630.1| hypothetical protein AnruMp28 (mitochondrion) [Anomodon rugelii]
           gi|336089487|gb|AEH99677.1| hypothetical protein
           AnruMp28 [Anomodon rugelii]
          Length = 101

 Score = 44.3 bits (103), Expect(2) = 1e-07
 Identities = 31/67 (46%), Positives = 39/67 (58%), Gaps = 14/67 (20%)
 Frame = +3

Query: 174 PGGAEETVRITNLKRGARA----------AGERVVSGQ*RPS*WHSSL----RLALEEPR 311
           PG AE+ VRIT+LKRGAR           +GERVV+   +P   +  L      ALE+P+
Sbjct: 20  PGEAEDMVRITSLKRGARPKLDRPSQAGYSGERVVN---KPIVLNPQLMALASAALEKPQ 76

Query: 312 GTPYRAS 332
           GTPYR S
Sbjct: 77  GTPYRVS 83



 Score = 36.6 bits (83), Expect(2) = 1e-07
 Identities = 15/21 (71%), Positives = 19/21 (90%)
 Frame = +1

Query: 328 QASIRDETPAQGPQFSLGGRT 390
           + S RD+TPAQGP+FSLGG+T
Sbjct: 81  RVSPRDQTPAQGPKFSLGGKT 101