BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00017580
         (635 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P82244.1|RK34_SPIOL RecName: Full=50S ribosomal protein L34, ...   101   1e-19
ref|XP_002317427.1| predicted protein [Populus trichocarpa] gi|2...    95   1e-17
ref|XP_002522558.1| 50S ribosomal protein L34, chloroplast precu...    93   5e-17
ref|NP_001238013.1| uncharacterized protein LOC100500433 [Glycin...    92   6e-17
ref|XP_002274637.1| PREDICTED: 50S ribosomal protein L34, chloro...    90   3e-16

>sp|P82244.1|RK34_SPIOL RecName: Full=50S ribosomal protein L34, chloroplastic; AltName:
           Full=CL34; Flags: Precursor gi|189096152|pdb|3BBO|4
           Chain 4, Homology Model For The Spinach Chloroplast 50s
           Subunit Fitted To 9.4a Cryo-Em Map Of The 70s
           Chlororibosome gi|7578860|gb|AAF64157.1|AF238221_1
           plastid ribosomal protein L34 precursor [Spinacia
           oleracea]
          Length = 152

 Score =  101 bits (252), Expect = 1e-19
 Identities = 62/133 (46%), Positives = 72/133 (54%)
 Frame = +1

Query: 97  RAPSASLSFLAGTRTPTSSIRLGTTSTRSGLLHCXXXXXXXXXXXXXXXXXXXXXINFSF 276
           R PSASL+F+ G+RT    +     S RSG LHC                     +  S 
Sbjct: 18  RTPSASLTFITGSRTTNKRVSFNGGSARSGSLHCSFLAPSSSLSSNFSGLSLGLDLT-SN 76

Query: 277 SNVKTRKRSGHVVCAGRAALCLTKRSRSRKSLAXXXXXXXXXXXXXXXAILKRRRAKGRK 456
           + V T +    VV AG+AALCLTKRSRSRKSLA               A+LKRRRAKGRK
Sbjct: 77  TGVSTDRCRRFVVRAGKAALCLTKRSRSRKSLARTHGFRLRMSTTSGRALLKRRRAKGRK 136

Query: 457 ILCTKTNPNSGVR 495
           ILCTKTNP+SG R
Sbjct: 137 ILCTKTNPSSGKR 149


>ref|XP_002317427.1| predicted protein [Populus trichocarpa] gi|222860492|gb|EEE98039.1|
           predicted protein [Populus trichocarpa]
          Length = 131

 Score = 94.7 bits (234), Expect = 1e-17
 Identities = 65/133 (48%), Positives = 76/133 (57%), Gaps = 5/133 (3%)
 Frame = +1

Query: 106 SASLSFLAGTRTPTS-SIRLGTTST-RSGLLHCXXXXXXXXXXXXXXXXXXXXX-INFSF 276
           SASLS ++G+RT    S+ + T ST RSGLLHC                      +N   
Sbjct: 1   SASLSLISGSRTKRGFSMNVATNSTTRSGLLHCSFLPSSSLSLPSSFSGLSLGLDLN--- 57

Query: 277 SNVKTRKRSGH--VVCAGRAALCLTKRSRSRKSLAXXXXXXXXXXXXXXXAILKRRRAKG 450
           SN+  RK  G   VV AG+AALCLTKRSRSRKSLA               A+LKRRRAKG
Sbjct: 58  SNIGVRKDIGRGLVVRAGKAALCLTKRSRSRKSLARTHGFRRRMRTTSGRAVLKRRRAKG 117

Query: 451 RKILCTKTNPNSG 489
           RK+LCTK+NPNSG
Sbjct: 118 RKVLCTKSNPNSG 130


>ref|XP_002522558.1| 50S ribosomal protein L34, chloroplast precursor, putative [Ricinus
           communis] gi|223538249|gb|EEF39858.1| 50S ribosomal
           protein L34, chloroplast precursor, putative [Ricinus
           communis]
          Length = 161

 Score = 92.8 bits (229), Expect = 5e-17
 Identities = 59/133 (44%), Positives = 71/133 (53%), Gaps = 2/133 (1%)
 Frame = +1

Query: 97  RAPSASLSFLAGTRTPT--SSIRLGTTSTRSGLLHCXXXXXXXXXXXXXXXXXXXXXINF 270
           R PSASLS   GTR     S   +  +++RSGLLHC                        
Sbjct: 26  RCPSASLSLSTGTRPRNKFSMNVISNSTSRSGLLHCSFLSTSSLSLSSSFSGLSLGLDLN 85

Query: 271 SFSNVKTRKRSGHVVCAGRAALCLTKRSRSRKSLAXXXXXXXXXXXXXXXAILKRRRAKG 450
           S + V+  +  G VV AG+AALC TKR+RSRKSLA               A+LKRRRAKG
Sbjct: 86  SSTGVRKGRGYGLVVRAGKAALCQTKRNRSRKSLARTHGFRRRMRTTSGRAVLKRRRAKG 145

Query: 451 RKILCTKTNPNSG 489
           RK+LCTK+NPNSG
Sbjct: 146 RKVLCTKSNPNSG 158


>ref|NP_001238013.1| uncharacterized protein LOC100500433 [Glycine max]
           gi|255630327|gb|ACU15520.1| unknown [Glycine max]
          Length = 146

 Score = 92.4 bits (228), Expect = 6e-17
 Identities = 63/136 (46%), Positives = 77/136 (56%), Gaps = 5/136 (3%)
 Frame = +1

Query: 97  RAPSASLSFLAGTRTPTS-SIRLGTT--STRSGLLHCXXXXXXXXXXXXXXXXXXXXXIN 267
           RAP+ S S +  T  P+S S+ L  T  S RS LLHC                     ++
Sbjct: 11  RAPTPSASLILTTPKPSSLSLNLTRTCSSARSPLLHCSFLSSPSHLSSPSSVSGLSLGLD 70

Query: 268 FSFSNVKTR--KRSGHVVCAGRAALCLTKRSRSRKSLAXXXXXXXXXXXXXXXAILKRRR 441
            + SNV T+  K SG VV AG+AALCLTKRSRSRKSLA               A+L+RRR
Sbjct: 71  LT-SNVGTKRGKGSGLVVRAGKAALCLTKRSRSRKSLARTHGFRKRMSTPGGRAVLRRRR 129

Query: 442 AKGRKILCTKTNPNSG 489
           AKGR++LCTKT+PNSG
Sbjct: 130 AKGRRVLCTKTHPNSG 145


>ref|XP_002274637.1| PREDICTED: 50S ribosomal protein L34, chloroplastic-like [Vitis
           vinifera]
          Length = 148

 Score = 90.1 bits (222), Expect = 3e-16
 Identities = 61/135 (45%), Positives = 73/135 (54%), Gaps = 4/135 (2%)
 Frame = +1

Query: 103 PSASLSFLAGT-RTPTSSIRLGTTSTRSGLLHC-XXXXXXXXXXXXXXXXXXXXXINFSF 276
           PSASLS LAG+ R   +S+ +    T   LLHC                      +N   
Sbjct: 16  PSASLSLLAGSKRRSLASLNMRNNPTSPALLHCSFTPTVSLSFPSSFSGLSLGLDLN--- 72

Query: 277 SNVKTRKRSGH--VVCAGRAALCLTKRSRSRKSLAXXXXXXXXXXXXXXXAILKRRRAKG 450
           S+V  RK  GH  VV AG+AALC TKR+RSRKSLA               A+LKRRRAKG
Sbjct: 73  SSVGVRKERGHGLVVRAGKAALCQTKRNRSRKSLARTHGFRRRMRTTSGRAVLKRRRAKG 132

Query: 451 RKILCTKTNPNSGVR 495
           RK+LCTK+NP+SG R
Sbjct: 133 RKVLCTKSNPSSGKR 147