BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00017480
         (850 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_004143692.1| PREDICTED: pentatricopeptide repeat-containi...   240   3e-61
emb|CAN78081.1| hypothetical protein VITISV_021300 [Vitis vinifera]   232   9e-59
ref|XP_002275423.2| PREDICTED: pentatricopeptide repeat-containi...   230   3e-58
ref|XP_002523895.1| pentatricopeptide repeat-containing protein,...   194   2e-47
ref|XP_002886081.1| pentatricopeptide repeat-containing protein ...   183   4e-44

>ref|XP_004143692.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g16880-like [Cucumis sativus]
           gi|449529106|ref|XP_004171542.1| PREDICTED:
           pentatricopeptide repeat-containing protein
           At2g16880-like [Cucumis sativus]
          Length = 783

 Score =  240 bits (613), Expect = 3e-61
 Identities = 126/267 (47%), Positives = 169/267 (63%), Gaps = 2/267 (0%)
 Frame = +2

Query: 56  QSKTVETIITILKKSSPPLNLLTQHIPTLNPSLIPSIIHSXXXXXXXXXXXSFFKWCQLH 235
           + + ++TI TIL  + P L+ L  +   L+PSLI SI  S           + FKW Q H
Sbjct: 18  EQQLIQTITTILNATKPSLSALAPYAAHLSPSLISSIFASKALSSHPSVLLNVFKWAQKH 77

Query: 236 LPNFTHPKTXXXXXXXXXXXXI--HYKKYEDIKSILICYILQDSNNCLLDYLLHPPQHFP 409
           +P+F+ P              +  HY  + D KS+LI +I  D  + L   +LHP +  P
Sbjct: 78  VPSFSSPPNNSLSSLLTLLPSLFRHYM-FSDAKSLLISFISSDRQHELHKLILHPTRDLP 136

Query: 410 APSISLLDTCITCYVHAKKPLLAVQIFKKMKRECKRMNFLTCVTLLNALVRYPFPRSVSL 589
            PS  LLDT I  YV   +P LA QIF KMKR   R N LTC TL+N+LVRYP   S+ L
Sbjct: 137 EPSKELLDTSIGAYVQMDQPHLATQIFNKMKRLNYRPNLLTCNTLMNSLVRYPSSSSILL 196

Query: 590 SKEIFEDSVILGIMPKTNTFNIMIYGCCLKYKFKDAMEFLNKMSEFGCSPDSITYNTILD 769
           ++++ +DS+ LG++P TN+FNI+IYG CL+ K KDA++++NKMSEFGC PD+++YNTILD
Sbjct: 197 ARQVLKDSIKLGVVPNTNSFNILIYGYCLESKVKDALDWVNKMSEFGCVPDTVSYNTILD 256

Query: 770 AFSKRGMLNEARDLLVDMKDKGLKPNK 850
           A  KR +L EARDLL+DMK KGL PNK
Sbjct: 257 ALLKRRLLQEARDLLLDMKSKGLSPNK 283



 Score = 62.8 bits (151), Expect = 1e-07
 Identities = 38/117 (32%), Positives = 61/117 (52%), Gaps = 1/117 (0%)
 Frame = +2

Query: 494 KMKRECKRMNFLTCVTLLNALVRYPFP-RSVSLSKEIFEDSVILGIMPKTNTFNIMIYGC 670
           +++ E ++MN L  V   N L+      R  S    + E+    G+     T+NI++   
Sbjct: 339 RIRDEMEKMNVLPDVVTYNTLIDGCSQWRDSSEVYSLIEEMDKKGVKCNAVTYNIILKWM 398

Query: 671 CLKYKFKDAMEFLNKMSEFGCSPDSITYNTILDAFSKRGMLNEARDLLVDMKDKGLK 841
           C K    +A   L+KM E G SPD +TYNT++ A+ K G + +A  ++ +M  KGLK
Sbjct: 399 CKKGNMTEATTTLDKMEENGLSPDCVTYNTLIGAYCKAGKMGKAFRMMDEMTSKGLK 455


>emb|CAN78081.1| hypothetical protein VITISV_021300 [Vitis vinifera]
          Length = 778

 Score =  232 bits (591), Expect = 9e-59
 Identities = 126/261 (48%), Positives = 163/261 (62%)
 Frame = +2

Query: 68  VETIITILKKSSPPLNLLTQHIPTLNPSLIPSIIHSXXXXXXXXXXXSFFKWCQLHLPNF 247
           ++TI TIL  ++ PL  L  +IP L P L+ SI+ S           SFFKW Q +LP F
Sbjct: 24  IQTITTILASNNMPLQALNTYIPQLTPPLVLSILSSKTLISRPNILISFFKWAQTNLPTF 83

Query: 248 THPKTXXXXXXXXXXXXIHYKKYEDIKSILICYILQDSNNCLLDYLLHPPQHFPAPSISL 427
            H                 ++K+ D KS+L+ +I  D  + L   +L       +PS +L
Sbjct: 84  PH--NSLPSLLSLLPSLFSHRKFSDAKSLLLGFIATDRRHDLHLSILR----LTSPSKAL 137

Query: 428 LDTCITCYVHAKKPLLAVQIFKKMKRECKRMNFLTCVTLLNALVRYPFPRSVSLSKEIFE 607
           LDT I  YV + +P  A QIFKKMKR   R N LTC TLLN+LVRYP   SVS S+E F 
Sbjct: 138 LDTAIGAYVQSGQPHHAFQIFKKMKRLRLRPNLLTCNTLLNSLVRYPSSHSVSFSREAFN 197

Query: 608 DSVILGIMPKTNTFNIMIYGCCLKYKFKDAMEFLNKMSEFGCSPDSITYNTILDAFSKRG 787
           D++ LGI+P  NTFNI+IYG CL+ KFKDA+EFLN M ++ CSPD++TYNTILDA  K+G
Sbjct: 198 DAIKLGIVPNVNTFNIVIYGYCLENKFKDAVEFLNVMGKYNCSPDNVTYNTILDALCKKG 257

Query: 788 MLNEARDLLVDMKDKGLKPNK 850
            L +ARDLL+DMK +GL PN+
Sbjct: 258 RLGDARDLLMDMKSRGLLPNR 278



 Score = 63.5 bits (153), Expect = 6e-08
 Identities = 37/117 (31%), Positives = 60/117 (51%), Gaps = 1/117 (0%)
 Frame = +2

Query: 494 KMKRECKRMNFLTCVTLLNALVRYPFPRS-VSLSKEIFEDSVILGIMPKTNTFNIMIYGC 670
           K++ E + +  L  V   N L+      S +S + ++ E+    G+ P   T NIM+   
Sbjct: 334 KLRDEMENLKLLPDVVSYNTLINGCLEWSKISEAFKLLEEMSEKGVKPNAVTHNIMVKWY 393

Query: 671 CLKYKFKDAMEFLNKMSEFGCSPDSITYNTILDAFSKRGMLNEARDLLVDMKDKGLK 841
           C + K  DA   + KM E G SPD +TYNT+++ + K G + EA   + +M  K +K
Sbjct: 394 CKEGKMDDASNTITKMEESGFSPDCVTYNTLINGYCKAGNMGEAFRTMDEMGRKNMK 450



 Score = 56.6 bits (135), Expect = 7e-06
 Identities = 40/146 (27%), Positives = 71/146 (48%), Gaps = 1/146 (0%)
 Frame = +2

Query: 413 PSISLLDTCITCYVHAKKPLLAVQIFKKM-KRECKRMNFLTCVTLLNALVRYPFPRSVSL 589
           P+++  +  I  Y    K   AV+    M K  C   N +T  T+L+AL +      +  
Sbjct: 206 PNVNTFNIVIYGYCLENKFKDAVEFLNVMGKYNCSPDN-VTYNTILDALCK---KGRLGD 261

Query: 590 SKEIFEDSVILGIMPKTNTFNIMIYGCCLKYKFKDAMEFLNKMSEFGCSPDSITYNTILD 769
           ++++  D    G++P  NT+NI++YG C     K+A   +  M++    PD  TYN +++
Sbjct: 262 ARDLLMDMKSRGLLPNRNTYNILVYGYCKMGWLKEAANVIELMTQNNLLPDVWTYNMLIN 321

Query: 770 AFSKRGMLNEARDLLVDMKDKGLKPN 847
                G + EA  L  +M++  L P+
Sbjct: 322 GLCNEGRIEEAFKLRDEMENLKLLPD 347


>ref|XP_002275423.2| PREDICTED: pentatricopeptide repeat-containing protein
           At2g16880-like [Vitis vinifera]
          Length = 778

 Score =  230 bits (586), Expect = 3e-58
 Identities = 125/261 (47%), Positives = 162/261 (62%)
 Frame = +2

Query: 68  VETIITILKKSSPPLNLLTQHIPTLNPSLIPSIIHSXXXXXXXXXXXSFFKWCQLHLPNF 247
           ++TI TIL  ++ PL  L  +IP L P L+ SI+ S           SFFKW Q +LP F
Sbjct: 24  IQTITTILASNNMPLQALNTYIPHLTPPLVLSILSSKTLISRPNILISFFKWAQTNLPTF 83

Query: 248 THPKTXXXXXXXXXXXXIHYKKYEDIKSILICYILQDSNNCLLDYLLHPPQHFPAPSISL 427
            H                 ++K+ D KS+L+ +I  D  + L   +L       +PS +L
Sbjct: 84  PH--NSLPSLLSLLPSLFSHRKFSDAKSLLLGFIATDRRHDLHLSILR----LTSPSKAL 137

Query: 428 LDTCITCYVHAKKPLLAVQIFKKMKRECKRMNFLTCVTLLNALVRYPFPRSVSLSKEIFE 607
           LDT I  YV + +P  A QIFKKMKR   R N LTC TLLN+LVRYP   SVS S+E F 
Sbjct: 138 LDTAIGAYVQSGQPHHAFQIFKKMKRLRLRPNLLTCNTLLNSLVRYPSSHSVSFSREAFN 197

Query: 608 DSVILGIMPKTNTFNIMIYGCCLKYKFKDAMEFLNKMSEFGCSPDSITYNTILDAFSKRG 787
           D++ LGI+P  NTFNI+IYG CL+ KFKDA+EFLN M ++ CSPD++TYNTILD   K+G
Sbjct: 198 DAIKLGIVPNVNTFNIVIYGYCLENKFKDAVEFLNVMGKYNCSPDNVTYNTILDTLCKKG 257

Query: 788 MLNEARDLLVDMKDKGLKPNK 850
            L +ARDLL+DMK +GL PN+
Sbjct: 258 RLGDARDLLMDMKSRGLLPNR 278



 Score = 63.5 bits (153), Expect = 6e-08
 Identities = 37/117 (31%), Positives = 60/117 (51%), Gaps = 1/117 (0%)
 Frame = +2

Query: 494 KMKRECKRMNFLTCVTLLNALVRYPFPRS-VSLSKEIFEDSVILGIMPKTNTFNIMIYGC 670
           K++ E + +  L  V   N L+      S +S + ++ E+    G+ P   T NIM+   
Sbjct: 334 KLRDEMENLKLLPDVVSYNTLINGCLEWSKISEAFKLLEEMSEKGVKPNAVTHNIMVKWY 393

Query: 671 CLKYKFKDAMEFLNKMSEFGCSPDSITYNTILDAFSKRGMLNEARDLLVDMKDKGLK 841
           C + K  DA   + KM E G SPD +TYNT+++ + K G + EA   + +M  K +K
Sbjct: 394 CKEGKMDDASNTITKMEESGFSPDCVTYNTLINGYCKAGNMGEAFRTMDEMGRKNMK 450


>ref|XP_002523895.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223536825|gb|EEF38464.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 784

 Score =  194 bits (493), Expect = 2e-47
 Identities = 111/275 (40%), Positives = 152/275 (55%), Gaps = 4/275 (1%)
 Frame = +2

Query: 38  QTKMQNQSKTVETIITILKKSS----PPLNLLTQHIPTLNPSLIPSIIHSXXXXXXXXXX 205
           Q  +  +S+ ++T+  IL          L   T H+ +  P+L+ S++ S          
Sbjct: 12  QKNVAEESQLLKTLTRILTSEDGNTLEKLKPYTAHL-SAKPNLLISVLSSNSLSNKPNTL 70

Query: 206 XSFFKWCQLHLPNFTHPKTXXXXXXXXXXXXIHYKKYEDIKSILICYILQDSNNCLLDYL 385
            SFFKW Q HL   +                + + K+ D KS+L  +I  D  + L  +L
Sbjct: 71  LSFFKWSQTHL---SVTSLSPLPLISLLSPLLSHHKFSDAKSLLTAFISADRTHLLHHHL 127

Query: 386 LHPPQHFPAPSISLLDTCITCYVHAKKPLLAVQIFKKMKRECKRMNFLTCVTLLNALVRY 565
           LH P         +LDT I  YV   +P  A QIF +MKR   + N LTC TL+NALVRY
Sbjct: 128 LHSPFKKVQSLRVILDTSIGAYVACNRPHHAAQIFNRMKRLHLKPNLLTCNTLINALVRY 187

Query: 566 PFPRSVSLSKEIFEDSVILGIMPKTNTFNIMIYGCCLKYKFKDAMEFLNKMSEFGCSPDS 745
           P   SV LSK IF D + LG+   TNTFNI+IYGCC++ K  +A+  + KM +F C PD+
Sbjct: 188 PSKPSVYLSKAIFSDVIKLGVKVNTNTFNILIYGCCIENKLSEAIGLIGKMKDFSCFPDN 247

Query: 746 ITYNTILDAFSKRGMLNEARDLLVDMKDKGLKPNK 850
           ++YNTILD   K+G LNEARDLL+DMK+ GL PN+
Sbjct: 248 VSYNTILDVLCKKGKLNEARDLLLDMKNNGLLPNR 282



 Score = 65.9 bits (159), Expect = 1e-08
 Identities = 39/119 (32%), Positives = 63/119 (52%), Gaps = 1/119 (0%)
 Frame = +2

Query: 494 KMKRECKRMNFLTCVTLLNALVRYPFPRSVSLSK-EIFEDSVILGIMPKTNTFNIMIYGC 670
           ++K E + +  L  V   N L+   F  S SL   E+ +     G+ P   T+N+++   
Sbjct: 338 RLKDEMENLKLLPDVVTYNTLINGCFDCSSSLKGFELIDKMEGKGVKPNAVTYNVVVKWY 397

Query: 671 CLKYKFKDAMEFLNKMSEFGCSPDSITYNTILDAFSKRGMLNEARDLLVDMKDKGLKPN 847
             + K  +A   L KM E G SPD +T+NT+++ + K G L+EA  ++ +M  KGLK N
Sbjct: 398 VKEGKMDNAGNELRKMEESGFSPDCVTFNTLINGYCKAGRLSEAFRMMDEMSRKGLKMN 456


>ref|XP_002886081.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata] gi|297331921|gb|EFH62340.1|
           pentatricopeptide repeat-containing protein [Arabidopsis
           lyrata subsp. lyrata]
          Length = 743

 Score =  183 bits (465), Expect = 4e-44
 Identities = 103/269 (38%), Positives = 159/269 (59%), Gaps = 4/269 (1%)
 Frame = +2

Query: 56  QSKTVETIITIL-KKSSPPLNLLTQHIPTLNPSLIPSIIHSXXXXXXXXXXXSFFKWCQL 232
           +S+ ++T+ +IL  + +  L  L  +IP +   L+ S++ S           SFF+W Q 
Sbjct: 8   ESQLLKTLTSILTSEKTHLLETLNPYIPQITQPLLSSLLSSPSLAKKPETLVSFFQWAQS 67

Query: 233 HLPNFTHPKTXXXXXXXXXXXXIHYKKYEDIKSILICYI-LQDSNNCLLDYLLHPPQHF- 406
            +P    P              + + K+ D KS+L+ YI   D++  L + LLHP  H  
Sbjct: 68  SIPE-AFPSDSPLPLLSVVRSLLSHHKFADAKSLLVSYIRTSDASLSLCNSLLHPNLHLS 126

Query: 407 PAPSISLLDTCITCYVHAKKPLLAVQIFKKMKRECKRMNFLTCVTLLNALVRYPFPRSVS 586
           P PS +L D  ++ Y+HA KP +A+Q+F+KM R   + N LTC TLL  LVRYP   S++
Sbjct: 127 PPPSKALFDIALSAYLHAGKPHVALQVFQKMIRLKLKPNLLTCNTLLIGLVRYPSSFSIA 186

Query: 587 LSKEIFEDSVILGIMPKTNTFNIMIYGCCLKYKFKDAMEFLNKM-SEFGCSPDSITYNTI 763
            ++E+F+D V +G+     TFN+++ G CL+ K +DA+  L +M SEF  +PD++TYNTI
Sbjct: 187 SAREVFDDMVKIGVSLDVKTFNVLVNGYCLEGKLEDALGMLERMVSEFNVNPDNVTYNTI 246

Query: 764 LDAFSKRGMLNEARDLLVDMKDKGLKPNK 850
           L A SK+G L++ +DLL+DMK  GL PN+
Sbjct: 247 LKAMSKKGRLSDVKDLLLDMKRNGLVPNR 275



 Score = 60.5 bits (145), Expect = 5e-07
 Identities = 33/105 (31%), Positives = 56/105 (53%)
 Frame = +2

Query: 536 VTLLNALVRYPFPRSVSLSKEIFEDSVILGIMPKTNTFNIMIYGCCLKYKFKDAMEFLNK 715
           VT  N +  Y    S+  + +I E      I+P   T+NI+I G C     ++ +E ++ 
Sbjct: 276 VTYNNLVYGYCKLGSLKEAFQIVELMKQTNILPDLCTYNILINGVCNAGSIREGLELMDV 335

Query: 716 MSEFGCSPDSITYNTILDAFSKRGMLNEARDLLVDMKDKGLKPNK 850
           M      PD +TYNT++D   + G+  EA+ L+  M++ G+KPN+
Sbjct: 336 MKSLKLQPDVVTYNTLIDGCFELGLSLEAKKLMEQMENDGVKPNQ 380