BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00017447
         (658 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002277390.1| PREDICTED: pentatricopeptide repeat-containi...   234   1e-59
ref|XP_002511313.1| pentatricopeptide repeat-containing protein,...   233   3e-59
ref|XP_004138087.1| PREDICTED: pentatricopeptide repeat-containi...   232   4e-59
ref|XP_003550712.1| PREDICTED: pentatricopeptide repeat-containi...   226   2e-57
ref|XP_002321639.1| predicted protein [Populus trichocarpa] gi|2...   223   2e-56

>ref|XP_002277390.1| PREDICTED: pentatricopeptide repeat-containing protein At3g48250,
           chloroplastic-like [Vitis vinifera]
          Length = 631

 Score =  234 bits (596), Expect = 1e-59
 Identities = 116/214 (54%), Positives = 146/214 (68%)
 Frame = +3

Query: 9   PDLDLAFRVFNKYEATGQTFIKSVYDGIHRSLTSVGRFDEAEKFLDNMRNAGFEPDNITY 188
           PDL L FRV  KYEA G +  K+VYDGIHRSLTSVGRFDEA K +++MR+AG EPDNITY
Sbjct: 351 PDLALVFRVTEKYEAVGNSLCKAVYDGIHRSLTSVGRFDEAGKIMESMRSAGCEPDNITY 410

Query: 189 SNIVFGFCKAGRMEEVCKMLGEREAQGYVLDFRTWALLIQRHCLTGEIDQALKFFAEMLE 368
           S +V+G CKA ++EE CK+L E EA G V D +TW +LIQ HC   E+D+AL  FA+M+E
Sbjct: 411 SQLVYGLCKARKLEEACKLLDEMEACGCVPDIKTWTILIQGHCAAKEVDKALICFAKMME 470

Query: 369 KNFDADPNLLDVLVNGLCSKGRVDDAYSLVLETVKKVNMRPLLDTYKNLIQNXXXXXXXX 548
           KN DAD +LL+VL+NG  S+ R+D AY L++E V   ++ P   TYK +I          
Sbjct: 471 KNCDADADLLEVLINGFLSQKRIDGAYKLLVEMVNTAHLVPWQATYKLMINKLLGVRKLE 530

Query: 549 XXXXXXXQMKIHEFPPFEEPFYDYISKFGMVDDA 650
                   MK   +PPF EPF +YISKFG V+DA
Sbjct: 531 EAINLLHLMKKQNYPPFPEPFIEYISKFGTVEDA 564


>ref|XP_002511313.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223550428|gb|EEF51915.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 627

 Score =  233 bits (593), Expect = 3e-59
 Identities = 114/216 (52%), Positives = 144/216 (66%)
 Frame = +3

Query: 9   PDLDLAFRVFNKYEATGQTFIKSVYDGIHRSLTSVGRFDEAEKFLDNMRNAGFEPDNITY 188
           PDL+L FRV NKYEATG +  K+VYDGIHRSLTS+G FDEA K +  M+ AG+EPDNITY
Sbjct: 349 PDLNLVFRVVNKYEATGNSLSKAVYDGIHRSLTSIGNFDEAAKMMKCMQTAGYEPDNITY 408

Query: 189 SNIVFGFCKAGRMEEVCKMLGEREAQGYVLDFRTWALLIQRHCLTGEIDQALKFFAEMLE 368
           S +VFG CKA R+EE C++L E EA G + D +TW +LIQ HC+  E+ +AL   A+M+E
Sbjct: 409 SQLVFGLCKARRLEEACEVLDEMEAHGCLPDIKTWTILIQGHCVANEVGKALMCLAKMME 468

Query: 369 KNFDADPNLLDVLVNGLCSKGRVDDAYSLVLETVKKVNMRPLLDTYKNLIQNXXXXXXXX 548
           K+ D D +LL VL+N   S+ R+D AY+L ++ V K  +RP   TYK LI+         
Sbjct: 469 KHCDPDADLLAVLINAFLSQKRIDGAYTLFMDMVDKARLRPWQATYKLLIEKLLEVRKLE 528

Query: 549 XXXXXXXQMKIHEFPPFEEPFYDYISKFGMVDDAID 656
                   MK H  PPF EPF  YIS+FG VDDA D
Sbjct: 529 EALNLLRLMKQHNHPPFPEPFVQYISRFGTVDDAAD 564


>ref|XP_004138087.1| PREDICTED: pentatricopeptide repeat-containing protein At3g48250,
           chloroplastic-like [Cucumis sativus]
           gi|449524136|ref|XP_004169079.1| PREDICTED:
           pentatricopeptide repeat-containing protein At3g48250,
           chloroplastic-like [Cucumis sativus]
          Length = 632

 Score =  232 bits (592), Expect = 4e-59
 Identities = 113/218 (51%), Positives = 147/218 (67%)
 Frame = +3

Query: 3   DTPDLDLAFRVFNKYEATGQTFIKSVYDGIHRSLTSVGRFDEAEKFLDNMRNAGFEPDNI 182
           D PDL L +RV  K+EATG +  K++YDGIHRSLTS G+FD+AE  + +MRNAG+EPDN+
Sbjct: 342 DNPDLSLVYRVAKKFEATGYSLSKAMYDGIHRSLTSTGKFDDAENIVKSMRNAGYEPDNV 401

Query: 183 TYSNIVFGFCKAGRMEEVCKMLGEREAQGYVLDFRTWALLIQRHCLTGEIDQALKFFAEM 362
           TYS +VFG CKA R+EE  K+L E EAQG + D +TW +LIQ HC   E+D AL  FA+M
Sbjct: 402 TYSQLVFGLCKARRLEEARKVLDEMEAQGCIPDIKTWTILIQGHCNANELDIALVCFAKM 461

Query: 363 LEKNFDADPNLLDVLVNGLCSKGRVDDAYSLVLETVKKVNMRPLLDTYKNLIQNXXXXXX 542
           +EKN D D +LLDVL++G  ++ +++ AY L++E   K ++RP   TYK LI+N      
Sbjct: 462 IEKNCDPDADLLDVLISGFLNQKKLNGAYQLLIELTNKAHVRPWQATYKQLIKNLLEVRK 521

Query: 543 XXXXXXXXXQMKIHEFPPFEEPFYDYISKFGMVDDAID 656
                     MK   +PPF EPF  YISKFG V DA D
Sbjct: 522 LEEAIALLRLMKKQNYPPFPEPFVQYISKFGTVQDADD 559


>ref|XP_003550712.1| PREDICTED: pentatricopeptide repeat-containing protein At3g48250,
           chloroplastic-like [Glycine max]
          Length = 635

 Score =  226 bits (577), Expect = 2e-57
 Identities = 111/216 (51%), Positives = 139/216 (64%)
 Frame = +3

Query: 3   DTPDLDLAFRVFNKYEATGQTFIKSVYDGIHRSLTSVGRFDEAEKFLDNMRNAGFEPDNI 182
           D P+LDL FRV  KYE+TG T  K++YDGIHRSLTS G FDEAE  +  MRNAG+EPDNI
Sbjct: 348 DKPNLDLVFRVAKKYESTGHTLSKAIYDGIHRSLTSAGNFDEAENIVRTMRNAGYEPDNI 407

Query: 183 TYSNIVFGFCKAGRMEEVCKMLGEREAQGYVLDFRTWALLIQRHCLTGEIDQALKFFAEM 362
           TYS +VFG CK  R EE CK+L + E+   + D +TW +LIQ HC   E+D+AL  FA+M
Sbjct: 408 TYSQMVFGLCKMRRFEEACKVLEDMESSRCIPDIKTWTILIQGHCSANEVDKALLCFAKM 467

Query: 363 LEKNFDADPNLLDVLVNGLCSKGRVDDAYSLVLETVKKVNMRPLLDTYKNLIQNXXXXXX 542
           +EK  D D +LLDVL +G  S+ R++ AY LV E  +K  + P   TYK LI+       
Sbjct: 468 IEKGCDPDADLLDVLADGFLSQKRIEGAYELVAEISRKCRISPWQATYKKLIEKLLGVMK 527

Query: 543 XXXXXXXXXQMKIHEFPPFEEPFYDYISKFGMVDDA 650
                     MK H +PP+  PF  YISKFG V+DA
Sbjct: 528 FEEALELLRLMKSHNYPPYHLPFVPYISKFGSVEDA 563


>ref|XP_002321639.1| predicted protein [Populus trichocarpa] gi|222868635|gb|EEF05766.1|
           predicted protein [Populus trichocarpa]
          Length = 476

 Score =  223 bits (569), Expect = 2e-56
 Identities = 110/218 (50%), Positives = 143/218 (65%)
 Frame = +3

Query: 3   DTPDLDLAFRVFNKYEATGQTFIKSVYDGIHRSLTSVGRFDEAEKFLDNMRNAGFEPDNI 182
           D PDLDL  RV + Y+ATG +  KSVYDG+HRS TS G+FDEAEK +  MR+AG+EPDNI
Sbjct: 196 DNPDLDLVSRVVDGYKATGNSLSKSVYDGMHRSFTSAGKFDEAEKIVKAMRDAGYEPDNI 255

Query: 183 TYSNIVFGFCKAGRMEEVCKMLGEREAQGYVLDFRTWALLIQRHCLTGEIDQALKFFAEM 362
           TYS +VFG CK+ R+EE CK+L E EA G + D +TW +LIQ H    ++D+ L    +M
Sbjct: 256 TYSQLVFGLCKSKRLEEACKVLDEMEAGGCIPDIKTWTILIQGHFAANQVDKGLLCLVKM 315

Query: 363 LEKNFDADPNLLDVLVNGLCSKGRVDDAYSLVLETVKKVNMRPLLDTYKNLIQNXXXXXX 542
            EKN D D +LLDVLV G  S+ ++D AY+ ++E V K+ + P   TYK LI+       
Sbjct: 316 TEKNTDPDADLLDVLVKGFLSQRKMDGAYTFLVEMVNKLRLVPWQATYKLLIEKLLQVRK 375

Query: 543 XXXXXXXXXQMKIHEFPPFEEPFYDYISKFGMVDDAID 656
                     MK H +PPF EPF  YISKFG V+DA++
Sbjct: 376 LEEATDLLRLMKKHNYPPFPEPFDQYISKFGTVEDAVN 413