BLASTX nr result
ID: Coptis23_contig00017340
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Coptis23_contig00017340
(1053 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
emb|CBI34953.3| unnamed protein product [Vitis vinifera] 91 5e-16
ref|XP_002275112.1| PREDICTED: DNA repair protein UVH3-like [Vit... 91 5e-16
ref|XP_004141182.1| PREDICTED: DNA repair protein UVH3-like [Cuc... 77 7e-12
ref|XP_002517370.1| DNA-repair protein UVH3, putative [Ricinus c... 64 6e-08
>emb|CBI34953.3| unnamed protein product [Vitis vinifera]
Length = 1449
Score = 90.9 bits (224), Expect = 5e-16
Identities = 85/270 (31%), Positives = 123/270 (45%), Gaps = 29/270 (10%)
Frame = +2
Query: 74 ETPGHESTKTSSCNINSSNDELEMQLENTERLYEVRKSRRPRKHVKYTEDDPETAGLSNP 253
E PG E + TSS + NS N+E E+ + + EVR+S+RPRK V Y DD E
Sbjct: 1191 ENPGSEISGTSSSDCNSGNEE-EVPAQKLDGSNEVRRSKRPRKAVNYANDDLEIDDEGKS 1249
Query: 254 TNQRDMQGLDKE-VGQEP-----VCEDICKD-AGSNLRQKDGEPFSKDGC-DYHEKGGGF 409
+Q + + ++E V EP +C D D +G N ++ + +D C DY E G
Sbjct: 1250 LDQGNQKCTNEEAVELEPSRDQIICGDAAADFSGKNQQKAEDSSPGEDLCGDYPETEGVM 1309
Query: 410 CLDEDKDENDSPQVVSTSTRFPEDVNVSLEDGFSADYLAMGGGFCMDEGEPD-------- 565
C+DE N+ Q+ S D + + D FS DYL MGGGFC++E E D
Sbjct: 1310 CMDE----NEIGQLDS------RDDDPTFADEFSEDYLKMGGGFCVEEDEKDKDHNARTY 1359
Query: 566 ----TEPVQLFSSPTSDLDESTGRRVDDLIIT-------DSLNP-LNCIVDHDSTRVGVL 709
+ + P S+L V L T + P +D + +G+
Sbjct: 1360 DPAKADTIYENPDPESELAIHPAESVSSLQNTAGGFQSEPTCQPDTELNLDCPNATIGLS 1419
Query: 710 QGDRLPKGDPSTTSTA-CLTPMPFLRRKRR 796
+ GD + T+T L MPFLR+KRR
Sbjct: 1420 MPEN--TGDDTGTNTVKALRAMPFLRKKRR 1447
>ref|XP_002275112.1| PREDICTED: DNA repair protein UVH3-like [Vitis vinifera]
Length = 1513
Score = 90.9 bits (224), Expect = 5e-16
Identities = 85/270 (31%), Positives = 123/270 (45%), Gaps = 29/270 (10%)
Frame = +2
Query: 74 ETPGHESTKTSSCNINSSNDELEMQLENTERLYEVRKSRRPRKHVKYTEDDPETAGLSNP 253
E PG E + TSS + NS N+E E+ + + EVR+S+RPRK V Y DD E
Sbjct: 1255 ENPGSEISGTSSSDCNSGNEE-EVPAQKLDGSNEVRRSKRPRKAVNYANDDLEIDDEGKS 1313
Query: 254 TNQRDMQGLDKE-VGQEP-----VCEDICKD-AGSNLRQKDGEPFSKDGC-DYHEKGGGF 409
+Q + + ++E V EP +C D D +G N ++ + +D C DY E G
Sbjct: 1314 LDQGNQKCTNEEAVELEPSRDQIICGDAAADFSGKNQQKAEDSSPGEDLCGDYPETEGVM 1373
Query: 410 CLDEDKDENDSPQVVSTSTRFPEDVNVSLEDGFSADYLAMGGGFCMDEGEPD-------- 565
C+DE N+ Q+ S D + + D FS DYL MGGGFC++E E D
Sbjct: 1374 CMDE----NEIGQLDS------RDDDPTFADEFSEDYLKMGGGFCVEEDEKDKDHNARTY 1423
Query: 566 ----TEPVQLFSSPTSDLDESTGRRVDDLIIT-------DSLNP-LNCIVDHDSTRVGVL 709
+ + P S+L V L T + P +D + +G+
Sbjct: 1424 DPAKADTIYENPDPESELAIHPAESVSSLQNTAGGFQSEPTCQPDTELNLDCPNATIGLS 1483
Query: 710 QGDRLPKGDPSTTSTA-CLTPMPFLRRKRR 796
+ GD + T+T L MPFLR+KRR
Sbjct: 1484 MPEN--TGDDTGTNTVKALRAMPFLRKKRR 1511
>ref|XP_004141182.1| PREDICTED: DNA repair protein UVH3-like [Cucumis sativus]
gi|449489542|ref|XP_004158342.1| PREDICTED: DNA repair
protein UVH3-like [Cucumis sativus]
Length = 1541
Score = 77.0 bits (188), Expect = 7e-12
Identities = 70/272 (25%), Positives = 111/272 (40%), Gaps = 30/272 (11%)
Frame = +2
Query: 74 ETPGHESTKTSSCNINSSNDELEMQLENTERLYEVRKSRRPRKHVKYTEDDPETAG---- 241
+TP + +TSS + + D + LEN + E R+S R RK Y DD +
Sbjct: 1287 KTPMTDLAETSSSDDDGEFDNQKFDLENLQEPQERRRSSRIRKSASYAIDDADQPSDHSA 1346
Query: 242 --LSNPTNQRDMQGLDKEVGQEPVCEDICKDAGSNLRQKDGEPFSKDGCDYHEKGGGFCL 415
SN ++D+ D+ + + N P DY E GGGFCL
Sbjct: 1347 DRFSNDKVEKDVVVQDQYTYPKTIISQ-----SQNTESSSRTPKQSLQNDYLETGGGFCL 1401
Query: 416 DEDKDENDSPQVVSTSTRFPEDVNVSLEDGFSADYLAMGGGFCMDEGEPDTEPV------ 577
ED+ ++ + ++E S DYL +GGGFC+D+ + +PV
Sbjct: 1402 VEDEKSRQE---------MCQNKDSAMEANNSEDYLTIGGGFCLDDNDECVDPVAHSDQA 1452
Query: 578 ------------------QLFSSPTSDLDESTGRRVDDLIITDSLNPLNCIVDHDSTRVG 703
FS+ +++ T R++ L + NP++ + +S++VG
Sbjct: 1453 TILEAQKDDFENDLIPDQSTFSTEEHIVEKDTDARIESLHGLGNSNPVS---NRNSSQVG 1509
Query: 704 VLQGDRLPKGDPSTTSTACLTPMPFLRRKRRK 799
+ PK L+ MP LRRKRRK
Sbjct: 1510 E-NVEEEPKDRSVRALGGGLSAMPNLRRKRRK 1540
>ref|XP_002517370.1| DNA-repair protein UVH3, putative [Ricinus communis]
gi|223543381|gb|EEF44912.1| DNA-repair protein UVH3,
putative [Ricinus communis]
Length = 1641
Score = 63.9 bits (154), Expect = 6e-08
Identities = 81/282 (28%), Positives = 113/282 (40%), Gaps = 44/282 (15%)
Frame = +2
Query: 83 GHESTKTSSCNINSSNDELEMQLENTERLYEVRKSRRPRKHVKYTEDDPETAGLSNPTNQ 262
G E + +S ++ +DELE+++E +E E+R+S R RK YT D G +
Sbjct: 1384 GIELSDSSYDYVSGDDDELEVRIEKSEGPQELRRSTRSRKPANYTLD-----GFKVDVDS 1438
Query: 263 RDMQGLDKEVGQEPVCEDI------CKDAGSNLRQKD--------GEPFSKDGCDYHEKG 400
+G DK+ + D+ DA S L K+ E FSKD + +
Sbjct: 1439 AVDRG-DKQSNESAAELDLFGVIGKSTDASSCLNGKEQHKVEDALPEDFSKD----YLEN 1493
Query: 401 GGFCLDEDKDENDSPQVVSTSTRFPEDVNVSLEDGFSADYLAMGGGFCMDEGEPDTEPVQ 580
G CL +D + ++P +V S DYL MGGGFCMDE E T+
Sbjct: 1494 GQHCLTDDN---------GSEPKYPGGASV------SKDYLKMGGGFCMDESETCTDQDA 1538
Query: 581 LFS------------SPTSDLDESTGRRVDDLIITDSL-NPLNCIVDHDSTRVGVLQ--- 712
S S S E T R L + S+ LN + D T +
Sbjct: 1539 AHSPSMPAFEEMADASNVSGSMEETDRGEGLLPLVCSIKRTLNDMQDGGKTNAHDAEPST 1598
Query: 713 --------GDR------LPKGDPSTTSTACLTPMPFLRRKRR 796
GD LP+ S T L+ MPFL+RKRR
Sbjct: 1599 DCLNATDIGDHSEASLCLPETTGSKTIAPTLSAMPFLKRKRR 1640