BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00017327
         (870 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CBI24961.3| unnamed protein product [Vitis vinifera]              290   4e-76
ref|XP_002272444.1| PREDICTED: RNA polymerase sigma factor rpoD-...   290   4e-76
ref|NP_196877.1| sigma factor 4 [Arabidopsis thaliana] gi|752165...   262   9e-68
ref|XP_003599441.1| RNA polymerase sigma factor [Medicago trunca...   249   6e-64
ref|XP_003599439.1| RNA polymerase sigma factor [Medicago trunca...   249   6e-64

>emb|CBI24961.3| unnamed protein product [Vitis vinifera]
          Length = 319

 Score =  290 bits (741), Expect = 4e-76
 Identities = 149/254 (58%), Positives = 194/254 (76%)
 Frame = -3

Query: 868 QWDASTRMKRRKLEMIMCKAXXXXXXXXXXXXRLVVSIANGYQGKGLRLEDLIQEGSIGL 689
           QW  +  +KR  L+ ++C              RLVVSIA  YQGKGL L+DLIQEGSIGL
Sbjct: 60  QWAEAVGIKRSSLDKMLCNGRESRERINQSYRRLVVSIAARYQGKGLSLQDLIQEGSIGL 119

Query: 688 LRGAKKFEPNKGFKLSTYVYWWIKQAIIRAIANKSRIIRLSGSMCEMVPKIVEANKELTR 509
           LRGA++F+P++G+KLSTYVYWWI+QAI+RAIANKSRIIRL GS+CEMV KI EA   L+R
Sbjct: 120 LRGAERFDPDRGYKLSTYVYWWIRQAIVRAIANKSRIIRLPGSICEMVAKIAEARTVLSR 179

Query: 508 RLGRNPTNDEIADSIGIKVSSITLLQKRNRPPISLDQSHQTLTECMTMQGIMPGPEELRP 329
           RL R PT DEIA+ I + VS++ L+ +R+R PIS+DQ+  T   CMT+Q I+PGP+E  P
Sbjct: 180 RLRRLPTYDEIAEFIDVNVSTVRLVSERSRTPISVDQA-VTSQGCMTLQEIIPGPDETTP 238

Query: 328 ENMLKKKVIKKEVDRVLMTLDSREALIMRLYFGLNGETTRSCEEIGMILNLSRERVRQIH 149
           + M+K++++K+EV+R L TL  REA I+RLYFG+NGET  S EEIG ++ LSRERVRQI+
Sbjct: 239 QKMVKRQLMKQEVERALNTLCEREAYILRLYFGINGETPLSFEEIGRLMKLSRERVRQIN 298

Query: 148 GIALAKLRRTNNID 107
            IAL+KLR+T+ +D
Sbjct: 299 SIALSKLRQTSVVD 312


>ref|XP_002272444.1| PREDICTED: RNA polymerase sigma factor rpoD-like [Vitis vinifera]
          Length = 426

 Score =  290 bits (741), Expect = 4e-76
 Identities = 149/254 (58%), Positives = 194/254 (76%)
 Frame = -3

Query: 868 QWDASTRMKRRKLEMIMCKAXXXXXXXXXXXXRLVVSIANGYQGKGLRLEDLIQEGSIGL 689
           QW  +  +KR  L+ ++C              RLVVSIA  YQGKGL L+DLIQEGSIGL
Sbjct: 167 QWAEAVGIKRSSLDKMLCNGRESRERINQSYRRLVVSIAARYQGKGLSLQDLIQEGSIGL 226

Query: 688 LRGAKKFEPNKGFKLSTYVYWWIKQAIIRAIANKSRIIRLSGSMCEMVPKIVEANKELTR 509
           LRGA++F+P++G+KLSTYVYWWI+QAI+RAIANKSRIIRL GS+CEMV KI EA   L+R
Sbjct: 227 LRGAERFDPDRGYKLSTYVYWWIRQAIVRAIANKSRIIRLPGSICEMVAKIAEARTVLSR 286

Query: 508 RLGRNPTNDEIADSIGIKVSSITLLQKRNRPPISLDQSHQTLTECMTMQGIMPGPEELRP 329
           RL R PT DEIA+ I + VS++ L+ +R+R PIS+DQ+  T   CMT+Q I+PGP+E  P
Sbjct: 287 RLRRLPTYDEIAEFIDVNVSTVRLVSERSRTPISVDQA-VTSQGCMTLQEIIPGPDETTP 345

Query: 328 ENMLKKKVIKKEVDRVLMTLDSREALIMRLYFGLNGETTRSCEEIGMILNLSRERVRQIH 149
           + M+K++++K+EV+R L TL  REA I+RLYFG+NGET  S EEIG ++ LSRERVRQI+
Sbjct: 346 QKMVKRQLMKQEVERALNTLCEREAYILRLYFGINGETPLSFEEIGRLMKLSRERVRQIN 405

Query: 148 GIALAKLRRTNNID 107
            IAL+KLR+T+ +D
Sbjct: 406 SIALSKLRQTSVVD 419


>ref|NP_196877.1| sigma factor 4 [Arabidopsis thaliana]
           gi|75216509|sp|Q9ZSL6.1|SIGD_ARATH RecName: Full=RNA
           polymerase sigma factor sigD, chloroplastic; Short=Sigma
           factor D; Short=Sigma-D; AltName: Full=RNA polymerase
           sigma factor sig4; Short=Atsig4; Short=Sigma factor 4;
           Flags: Precursor gi|3983260|gb|AAC97954.1| sigma-like
           factor [Arabidopsis thaliana] gi|4972296|dbj|BAA78110.1|
           RNA polymerase sigma subunit SigD [Arabidopsis thaliana]
           gi|9758039|dbj|BAB08700.1| sigma-like factor
           [Arabidopsis thaliana] gi|332004550|gb|AED91933.1| sigma
           factor 4 [Arabidopsis thaliana]
          Length = 419

 Score =  262 bits (669), Expect = 9e-68
 Identities = 133/248 (53%), Positives = 186/248 (75%)
 Frame = -3

Query: 844 KRRKLEMIMCKAXXXXXXXXXXXXRLVVSIANGYQGKGLRLEDLIQEGSIGLLRGAKKFE 665
           K+R    I+C+             RLVVSIA GYQGKGL L+DLIQEGSIGLLRGA++F+
Sbjct: 165 KKRSANEILCRRKEAREKITRCYRRLVVSIATGYQGKGLNLQDLIQEGSIGLLRGAERFD 224

Query: 664 PNKGFKLSTYVYWWIKQAIIRAIANKSRIIRLSGSMCEMVPKIVEANKELTRRLGRNPTN 485
           P++G+KLSTYVYWWIKQAI+RAIA+KSR+++L GSM E+  K+ EA+  LTR+L R P+ 
Sbjct: 225 PDRGYKLSTYVYWWIKQAILRAIAHKSRLVKLPGSMWELTAKVAEASNVLTRKLRRQPSC 284

Query: 484 DEIADSIGIKVSSITLLQKRNRPPISLDQSHQTLTECMTMQGIMPGPEELRPENMLKKKV 305
           +EIA+ + + VS++ L  +R+R P+SLD+   +    MT+Q I+ GP+E RPE M+K++ 
Sbjct: 285 EEIAEHLNLNVSAVRLAVERSRSPVSLDRV-ASQNGRMTLQEIVRGPDETRPEEMVKREH 343

Query: 304 IKKEVDRVLMTLDSREALIMRLYFGLNGETTRSCEEIGMILNLSRERVRQIHGIALAKLR 125
           +K E++++L +L +RE+ ++ LYFGLNGET  S EEIG  L LSRERVRQI+GIAL KLR
Sbjct: 344 MKHEIEQLLGSLTARESRVLGLYFGLNGETPMSFEEIGKSLKLSRERVRQINGIALKKLR 403

Query: 124 RTNNIDNI 101
             +N++++
Sbjct: 404 NVHNVNDL 411


>ref|XP_003599441.1| RNA polymerase sigma factor [Medicago truncatula]
           gi|355488489|gb|AES69692.1| RNA polymerase sigma factor
           [Medicago truncatula]
          Length = 267

 Score =  249 bits (636), Expect = 6e-64
 Identities = 129/223 (57%), Positives = 170/223 (76%)
 Frame = -3

Query: 769 LVVSIANGYQGKGLRLEDLIQEGSIGLLRGAKKFEPNKGFKLSTYVYWWIKQAIIRAIAN 590
           LV SIA  YQGKGL ++DLIQEG+IGLL GA+KF+PN+G KLSTYVYWWIKQ II+A+A 
Sbjct: 41  LVASIAAHYQGKGLSIQDLIQEGTIGLLHGAEKFDPNRGCKLSTYVYWWIKQGIIKALAK 100

Query: 589 KSRIIRLSGSMCEMVPKIVEANKELTRRLGRNPTNDEIADSIGIKVSSITLLQKRNRPPI 410
           KSR+IRL G    MV KI EAN  L RRL R PT +EIA+ + + VS++ L+ +R+R PI
Sbjct: 101 KSRLIRLPGEKYGMVAKIAEANNVLRRRLRRKPTYNEIAEVLNVNVSTVKLVSERSRQPI 160

Query: 409 SLDQSHQTLTECMTMQGIMPGPEELRPENMLKKKVIKKEVDRVLMTLDSREALIMRLYFG 230
           SLD+S  T    + ++ I+PGP E+ PE M++++++K+ V ++L TLD RE  I+RLYFG
Sbjct: 161 SLDRS-ITDQSNLILKEIIPGPVEMIPEKMVERQLMKQGVVKLLNTLDKREEEIVRLYFG 219

Query: 229 LNGETTRSCEEIGMILNLSRERVRQIHGIALAKLRRTNNIDNI 101
           LNGET  S EEIG +L LSRER+RQIHGIAL+KL +   +D++
Sbjct: 220 LNGETPLSFEEIGKLLKLSRERIRQIHGIALSKLEQNTLVDSL 262


>ref|XP_003599439.1| RNA polymerase sigma factor [Medicago truncatula]
           gi|355488487|gb|AES69690.1| RNA polymerase sigma factor
           [Medicago truncatula]
          Length = 403

 Score =  249 bits (636), Expect = 6e-64
 Identities = 129/223 (57%), Positives = 170/223 (76%)
 Frame = -3

Query: 769 LVVSIANGYQGKGLRLEDLIQEGSIGLLRGAKKFEPNKGFKLSTYVYWWIKQAIIRAIAN 590
           LV SIA  YQGKGL ++DLIQEG+IGLL GA+KF+PN+G KLSTYVYWWIKQ II+A+A 
Sbjct: 177 LVASIAAHYQGKGLSIQDLIQEGTIGLLHGAEKFDPNRGCKLSTYVYWWIKQGIIKALAK 236

Query: 589 KSRIIRLSGSMCEMVPKIVEANKELTRRLGRNPTNDEIADSIGIKVSSITLLQKRNRPPI 410
           KSR+IRL G    MV KI EAN  L RRL R PT +EIA+ + + VS++ L+ +R+R PI
Sbjct: 237 KSRLIRLPGEKYGMVAKIAEANNVLRRRLRRKPTYNEIAEVLNVNVSTVKLVSERSRQPI 296

Query: 409 SLDQSHQTLTECMTMQGIMPGPEELRPENMLKKKVIKKEVDRVLMTLDSREALIMRLYFG 230
           SLD+S  T    + ++ I+PGP E+ PE M++++++K+ V ++L TLD RE  I+RLYFG
Sbjct: 297 SLDRS-ITDQSNLILKEIIPGPVEMIPEKMVERQLMKQGVVKLLNTLDKREEEIVRLYFG 355

Query: 229 LNGETTRSCEEIGMILNLSRERVRQIHGIALAKLRRTNNIDNI 101
           LNGET  S EEIG +L LSRER+RQIHGIAL+KL +   +D++
Sbjct: 356 LNGETPLSFEEIGKLLKLSRERIRQIHGIALSKLEQNTLVDSL 398