BLASTX nr result
ID: Coptis23_contig00017314
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Coptis23_contig00017314
(1235 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_002511796.1| conserved hypothetical protein [Ricinus comm... 90 5e-16
ref|XP_003534016.1| PREDICTED: F-box protein At4g00755-like [Gly... 91 6e-16
dbj|BAK04093.1| predicted protein [Hordeum vulgare subsp. vulgare] 89 3e-15
dbj|BAJ85093.1| predicted protein [Hordeum vulgare subsp. vulgare] 89 3e-15
ref|XP_002273381.1| PREDICTED: F-box protein At4g00755-like [Vit... 86 7e-15
>ref|XP_002511796.1| conserved hypothetical protein [Ricinus communis]
gi|223548976|gb|EEF50465.1| conserved hypothetical
protein [Ricinus communis]
Length = 362
Score = 90.1 bits (222), Expect(2) = 5e-16
Identities = 58/125 (46%), Positives = 76/125 (60%), Gaps = 1/125 (0%)
Frame = -1
Query: 695 VPGRLTYRLSSTLCFITETKVNQGTTIPRWFSYIFRKD-VRFRMGHLKSPGEMETVFVDV 519
VP L Y+L + +C ITE V+ + + I+ + VRFRMGHLK+P E + +
Sbjct: 156 VPETLIYKLVADICLITEISVHPFQAFFQPGTPIYSANSVRFRMGHLKAP-EDDPMSEPC 214
Query: 518 LHTGDNFV*R*VSPEFSITWENCLQGFKLPQRHRQYLCIGEILQFELLGRVHKQETNGLL 339
+ D+ V SPEF++ EN LQ F+LP+ LCIG ILQ ELLGRV KQE +GL
Sbjct: 215 DNCADDVVWTYTSPEFAMAQENRLQKFELPE---PVLCIGGILQVELLGRVQKQEMDGLF 271
Query: 338 YICVS 324
YICVS
Sbjct: 272 YICVS 276
Score = 21.6 bits (44), Expect(2) = 5e-16
Identities = 8/9 (88%), Positives = 8/9 (88%)
Frame = -3
Query: 735 ASYWSSDGQ 709
ASYWSS GQ
Sbjct: 143 ASYWSSKGQ 151
>ref|XP_003534016.1| PREDICTED: F-box protein At4g00755-like [Glycine max]
Length = 374
Score = 90.9 bits (224), Expect = 6e-16
Identities = 61/130 (46%), Positives = 75/130 (57%), Gaps = 6/130 (4%)
Frame = -1
Query: 695 VPGRLTYRLSSTLCFITETKVNQGTT-IPRWFSYIFRKDVRFRMGHLKSPGEMETVFVDV 519
VP L Y+L+S LC +TE V+ F K VRFRMGH + P E+E+ VD
Sbjct: 158 VPETLVYKLASKLCLVTEIYVHPFQAYFQHGFPIYSAKAVRFRMGHPRHPMELESA-VDK 216
Query: 518 LHT----GDN-FV*R*VSPEFSITWENCLQGFKLPQRHRQYLCIGEILQFELLGRVHKQE 354
+ T GDN F+ SPEF + EN LQ FKLP+ LCIG +L ELLGRV KQE
Sbjct: 217 MATNDVLGDNQFIWTYTSPEFPMFQENRLQKFKLPE---PVLCIGGVLLVELLGRVQKQE 273
Query: 353 TNGLLYICVS 324
+ L YIC+S
Sbjct: 274 MDELFYICIS 283
>dbj|BAK04093.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 360
Score = 88.6 bits (218), Expect = 3e-15
Identities = 54/128 (42%), Positives = 73/128 (57%), Gaps = 6/128 (4%)
Frame = -1
Query: 692 PGRLTYRLSSTLCFITETKVNQGTTIPRWFSYIFR-KDVRFRMGHLKSPGEMETVFVD-- 522
P LTYRL+S +C + E +V + I+ K VRFRMGH K P E E+ +D
Sbjct: 157 PESLTYRLNSDICVVDEIRVRPYQAFFQDDDPIYSSKTVRFRMGHYKLPRESESFIIDDD 216
Query: 521 ---VLHTGDNFV*R*VSPEFSITWENCLQGFKLPQRHRQYLCIGEILQFELLGRVHKQET 351
+++ + ++ SPEF + +N LQ FKLP R LCIG +L ELLGRV KQE
Sbjct: 217 ENKMVNAEEKYMWTYTSPEFPMLQKNELQSFKLP---RPALCIGGVLMIELLGRVQKQEA 273
Query: 350 NGLLYICV 327
+ + YICV
Sbjct: 274 DDMYYICV 281
>dbj|BAJ85093.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 397
Score = 88.6 bits (218), Expect = 3e-15
Identities = 54/128 (42%), Positives = 73/128 (57%), Gaps = 6/128 (4%)
Frame = -1
Query: 692 PGRLTYRLSSTLCFITETKVNQGTTIPRWFSYIFR-KDVRFRMGHLKSPGEMETVFVD-- 522
P LTYRL+S +C + E +V + I+ K VRFRMGH K P E E+ +D
Sbjct: 157 PESLTYRLNSDICVVDEIRVRPYQAFFQDDDPIYSSKTVRFRMGHYKLPRESESFIIDDD 216
Query: 521 ---VLHTGDNFV*R*VSPEFSITWENCLQGFKLPQRHRQYLCIGEILQFELLGRVHKQET 351
+++ + ++ SPEF + +N LQ FKLP R LCIG +L ELLGRV KQE
Sbjct: 217 ENKMVNAEEKYMWTYTSPEFPMLQKNELQSFKLP---RPALCIGGVLMIELLGRVQKQEA 273
Query: 350 NGLLYICV 327
+ + YICV
Sbjct: 274 DDMYYICV 281
>ref|XP_002273381.1| PREDICTED: F-box protein At4g00755-like [Vitis vinifera]
Length = 396
Score = 86.3 bits (212), Expect(2) = 7e-15
Identities = 59/149 (39%), Positives = 74/149 (49%), Gaps = 25/149 (16%)
Frame = -1
Query: 695 VPGRLTYRLSSTLCFITETKVNQGTTIPRWFSYIFR-KDVRFRMGHLKSPGEMETVF--- 528
VP L Y+L + CFITE V + I+ K VRFR+GH KSP ++ +
Sbjct: 157 VPETLVYKLDAVFCFITEINVQPFQAFFQPGDPIYAAKSVRFRVGHPKSPSPLDILLQKA 216
Query: 527 ------------------VDVLHTG---DNFV*R*VSPEFSITWENCLQGFKLPQRHRQY 411
VD+LH D F+ S EF + EN LQ FKLP +
Sbjct: 217 IQRNIRTDTSEGFSMAQPVDILHQEAPEDGFIWTWTSQEFPMAQENRLQKFKLP---KPV 273
Query: 410 LCIGEILQFELLGRVHKQETNGLLYICVS 324
LC G I+Q ELLGRV +QE +GL YICVS
Sbjct: 274 LCFGGIVQIELLGRVQRQEMDGLFYICVS 302
Score = 21.6 bits (44), Expect(2) = 7e-15
Identities = 8/9 (88%), Positives = 8/9 (88%)
Frame = -3
Query: 735 ASYWSSDGQ 709
ASYWSS GQ
Sbjct: 144 ASYWSSKGQ 152