BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00017277
         (1147 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002279994.1| PREDICTED: pentatricopeptide repeat-containi...   179   2e-55
emb|CBI37720.3| unnamed protein product [Vitis vinifera]              179   2e-55
ref|XP_002514404.1| conserved hypothetical protein [Ricinus comm...   172   1e-47
ref|XP_004144958.1| PREDICTED: pentatricopeptide repeat-containi...   156   2e-45
ref|XP_002312792.1| predicted protein [Populus trichocarpa] gi|2...   151   5e-43

>ref|XP_002279994.1| PREDICTED: pentatricopeptide repeat-containing protein At3g46870
           [Vitis vinifera]
          Length = 246

 Score =  179 bits (455), Expect(2) = 2e-55
 Identities = 92/163 (56%), Positives = 119/163 (73%)
 Frame = -2

Query: 939 EQVFESKVRRLLKFDMLAVFRELLRQNEALLALQVFKDVRKEYWYKPQVLVYADMIKMFA 760
           E+VFESKVRRLLK DM+AV ++LL QNE LLAL+VF DVRKEYWYKPQV +YA+MI++  
Sbjct: 77  ERVFESKVRRLLKLDMIAVLKQLLNQNECLLALKVFDDVRKEYWYKPQVSLYAEMIRVLG 136

Query: 759 SNDFXXXXXXXXXXLKIERYHLDANTEGFNALFRTLMNYGFTTSAMDCFQFMKDVQCDPN 580
           SN            LK E   L+  TEGFNAL RTL+++  T  AM+CFQ MK   C+PN
Sbjct: 137 SNGLFEQVHLLLSYLKKET-GLELETEGFNALLRTLIDFDMTGPAMECFQLMKTSGCEPN 195

Query: 579 ESTFKILVNGLESKGETGLSSMLRQEAEKYFGWPLEHQEEEKE 451
           +S+F+IL+ GLESKGE  +S+ ++ +A+KYFG  LE  EEE++
Sbjct: 196 KSSFRILIKGLESKGELDISATVKLDAQKYFGESLEFLEEEED 238



 Score = 63.5 bits (153), Expect(2) = 2e-55
 Identities = 31/40 (77%), Positives = 37/40 (92%)
 Frame = -3

Query: 1145 QSRKQLQRGRNLSIEAIQTVQALKRAKKDDNMVEQVFESK 1026
            Q+RK LQRGRNLSIEAIQ VQALKRAK+D++ +E+VFESK
Sbjct: 44   QNRKPLQRGRNLSIEAIQAVQALKRAKRDESSLERVFESK 83


>emb|CBI37720.3| unnamed protein product [Vitis vinifera]
          Length = 208

 Score =  179 bits (455), Expect(2) = 2e-55
 Identities = 92/163 (56%), Positives = 119/163 (73%)
 Frame = -2

Query: 939 EQVFESKVRRLLKFDMLAVFRELLRQNEALLALQVFKDVRKEYWYKPQVLVYADMIKMFA 760
           E+VFESKVRRLLK DM+AV ++LL QNE LLAL+VF DVRKEYWYKPQV +YA+MI++  
Sbjct: 39  ERVFESKVRRLLKLDMIAVLKQLLNQNECLLALKVFDDVRKEYWYKPQVSLYAEMIRVLG 98

Query: 759 SNDFXXXXXXXXXXLKIERYHLDANTEGFNALFRTLMNYGFTTSAMDCFQFMKDVQCDPN 580
           SN            LK E   L+  TEGFNAL RTL+++  T  AM+CFQ MK   C+PN
Sbjct: 99  SNGLFEQVHLLLSYLKKET-GLELETEGFNALLRTLIDFDMTGPAMECFQLMKTSGCEPN 157

Query: 579 ESTFKILVNGLESKGETGLSSMLRQEAEKYFGWPLEHQEEEKE 451
           +S+F+IL+ GLESKGE  +S+ ++ +A+KYFG  LE  EEE++
Sbjct: 158 KSSFRILIKGLESKGELDISATVKLDAQKYFGESLEFLEEEED 200



 Score = 63.5 bits (153), Expect(2) = 2e-55
 Identities = 31/40 (77%), Positives = 37/40 (92%)
 Frame = -3

Query: 1145 QSRKQLQRGRNLSIEAIQTVQALKRAKKDDNMVEQVFESK 1026
            Q+RK LQRGRNLSIEAIQ VQALKRAK+D++ +E+VFESK
Sbjct: 6    QNRKPLQRGRNLSIEAIQAVQALKRAKRDESSLERVFESK 45


>ref|XP_002514404.1| conserved hypothetical protein [Ricinus communis]
           gi|223546501|gb|EEF48000.1| conserved hypothetical
           protein [Ricinus communis]
          Length = 248

 Score =  172 bits (437), Expect(2) = 1e-47
 Identities = 87/164 (53%), Positives = 114/164 (69%)
 Frame = -2

Query: 939 EQVFESKVRRLLKFDMLAVFRELLRQNEALLALQVFKDVRKEYWYKPQVLVYADMIKMFA 760
           + VF SK  RLLK DML+V RELLRQN  LLAL+VFKD+RKEYWYKPQV +Y DMIK  A
Sbjct: 84  DSVFRSKFSRLLKLDMLSVLRELLRQNHCLLALKVFKDIRKEYWYKPQVSLYDDMIKAMA 143

Query: 759 SNDFXXXXXXXXXXLKIERYHLDANTEGFNALFRTLMNYGFTTSAMDCFQFMKDVQCDPN 580
           SN +          LK E   ++  T+ FNALF TL+ +  +  AM+ +  MK V+C+P+
Sbjct: 144 SNGYFEQVELLCIYLKTETNLIEPETDAFNALFTTLITFNLSGFAMEFYGLMKAVKCEPD 203

Query: 579 ESTFKILVNGLESKGETGLSSMLRQEAEKYFGWPLEHQEEEKEE 448
             TF+IL+NGLES GE+  S++LRQ+A K++G  LE  EEE++E
Sbjct: 204 RLTFRILINGLESMGESSASAILRQDAHKFYGQSLEFLEEEEDE 247



 Score = 45.1 bits (105), Expect(2) = 1e-47
 Identities = 24/41 (58%), Positives = 32/41 (78%), Gaps = 2/41 (4%)
 Frame = -3

Query: 1142 SRKQLQRGRNLSIEAIQTVQALKRAK--KDDNMVEQVFESK 1026
            +RKQLQ+GRNLSIE+IQ VQ+LKRA     ++ ++ VF SK
Sbjct: 50   NRKQLQKGRNLSIESIQAVQSLKRAYYFSTNSNLDSVFRSK 90


>ref|XP_004144958.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g46870-like [Cucumis sativus]
           gi|449473007|ref|XP_004153757.1| PREDICTED:
           pentatricopeptide repeat-containing protein
           At3g46870-like [Cucumis sativus]
           gi|449517150|ref|XP_004165609.1| PREDICTED:
           pentatricopeptide repeat-containing protein
           At3g46870-like [Cucumis sativus]
          Length = 249

 Score =  156 bits (395), Expect(2) = 2e-45
 Identities = 80/163 (49%), Positives = 114/163 (69%)
 Frame = -2

Query: 939 EQVFESKVRRLLKFDMLAVFRELLRQNEALLALQVFKDVRKEYWYKPQVLVYADMIKMFA 760
           ++V++SK+RRLLKFDMLAV RELLRQNE  LAL+VF+DVRKE+WYKPQV +YAD+I + A
Sbjct: 80  DRVYDSKIRRLLKFDMLAVLRELLRQNECSLALKVFEDVRKEHWYKPQVSLYADIITVLA 139

Query: 759 SNDFXXXXXXXXXXLKIERYHLDANTEGFNALFRTLMNYGFTTSAMDCFQFMKDVQCDPN 580
           SN            +K E   L    +GFNAL + L+++     AM+ +  MKDV C+P+
Sbjct: 140 SNGLFERVQIILSYMKAEA-DLAPEIDGFNALLKALVSHNLGELAMESYYLMKDVGCEPD 198

Query: 579 ESTFKILVNGLESKGETGLSSMLRQEAEKYFGWPLEHQEEEKE 451
           +++F+I++ GLESKGE      ++Q+A++ +G  LE  EEE+E
Sbjct: 199 KASFRIVIKGLESKGEAVDLRTVKQDAQRLYGESLEFLEEEEE 241



 Score = 53.9 bits (128), Expect(2) = 2e-45
 Identities = 25/40 (62%), Positives = 34/40 (85%)
 Frame = -3

Query: 1145 QSRKQLQRGRNLSIEAIQTVQALKRAKKDDNMVEQVFESK 1026
            ++RK LQ+GRNLSIEAIQ VQ+LKR KKD   +++V++SK
Sbjct: 47   ENRKPLQKGRNLSIEAIQAVQSLKRTKKDLQQLDRVYDSK 86


>ref|XP_002312792.1| predicted protein [Populus trichocarpa] gi|222849200|gb|EEE86747.1|
           predicted protein [Populus trichocarpa]
          Length = 216

 Score =  151 bits (382), Expect(2) = 5e-43
 Identities = 83/165 (50%), Positives = 112/165 (67%), Gaps = 3/165 (1%)
 Frame = -2

Query: 939 EQVFESKVRRLLKFDMLAVFRELLRQNEALLALQVFKDVRKEYWYKPQVLVYADMIKMFA 760
           +QVF SK  RLLKFDM AV RELLRQN  LLAL+VF+D+R E+WYKP+VL+Y DMI++ A
Sbjct: 48  DQVFRSKFSRLLKFDMTAVLRELLRQNHCLLALKVFEDIRVEHWYKPKVLLYNDMIQVMA 107

Query: 759 SNDFXXXXXXXXXXLKIE-RYHLDANTEGFNALFRTLMNYGFTTSAMDCFQFMKD--VQC 589
           SN F          L+ E    L   T+ FN L  TL+++      M+C+++MK   V C
Sbjct: 108 SNGFIEEVQLLFRYLESEITGDLQFKTDEFNQLLATLISFKLGGLVMECYEWMKSVVVGC 167

Query: 588 DPNESTFKILVNGLESKGETGLSSMLRQEAEKYFGWPLEHQEEEK 454
           +P+ STFK+LVNGLES GE  LS ++RQ+A K++G  L+ + EE+
Sbjct: 168 EPDRSTFKLLVNGLESIGEFELSVVVRQDAYKFYGESLDFEAEEE 212



 Score = 50.4 bits (119), Expect(2) = 5e-43
 Identities = 26/40 (65%), Positives = 33/40 (82%), Gaps = 1/40 (2%)
 Frame = -3

Query: 1142 SRKQLQRGRNLSIEAIQTVQALKRA-KKDDNMVEQVFESK 1026
            +RK LQ+GRNLSIEAIQT+QALK A   D ++++QVF SK
Sbjct: 15   NRKPLQKGRNLSIEAIQTIQALKLAYNNDKSLLDQVFRSK 54