BLASTX nr result
ID: Coptis23_contig00017228
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Coptis23_contig00017228
(407 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_003632690.1| PREDICTED: pentatricopeptide repeat-containi... 70 2e-10
ref|XP_002986825.1| hypothetical protein SELMODRAFT_22884 [Selag... 69 3e-10
ref|XP_002322556.1| predicted protein [Populus trichocarpa] gi|2... 69 5e-10
ref|XP_002870540.1| pentatricopeptide repeat-containing protein ... 68 7e-10
ref|XP_002520592.1| pentatricopeptide repeat-containing protein,... 68 7e-10
>ref|XP_003632690.1| PREDICTED: pentatricopeptide repeat-containing protein At2g35030,
mitochondrial-like [Vitis vinifera]
Length = 635
Score = 70.1 bits (170), Expect = 2e-10
Identities = 32/87 (36%), Positives = 56/87 (64%)
Frame = +2
Query: 146 HDLVHKNIITCTKKLMQVWRTGELNNAMKLFEQMPARNRVTWNTMLTILVQSNNLNEARR 325
+++ +KN+++ + + G +++AM LFE+MP RN V+WNT++++L Q + EARR
Sbjct: 139 NEMPNKNVVSWNTMIDGYAQNGRIDSAMYLFEKMPERNVVSWNTVMSMLAQCGRIEEARR 198
Query: 326 LFLAMPKYNSTSYTLMITAFSSGGFVE 406
LF MP+ + S+T MI S G ++
Sbjct: 199 LFDRMPERDVISWTAMIAGLSKNGRID 225
Score = 62.4 bits (150), Expect = 4e-08
Identities = 30/73 (41%), Positives = 47/73 (64%)
Frame = +2
Query: 161 KNIITCTKKLMQVWRTGELNNAMKLFEQMPARNRVTWNTMLTILVQSNNLNEARRLFLAM 340
+N+++ + + L+ A+ LFE+MP R+ +WNTM+T L+Q+ +L AR+LF M
Sbjct: 237 RNVVSWNAMITGYAQNLRLDEALDLFERMPERDLPSWNTMITGLIQNGDLRRARKLFNEM 296
Query: 341 PKYNSTSYTLMIT 379
PK N S+T MIT
Sbjct: 297 PKKNVISWTTMIT 309
Score = 56.6 bits (135), Expect = 2e-06
Identities = 27/82 (32%), Positives = 49/82 (59%)
Frame = +2
Query: 161 KNIITCTKKLMQVWRTGELNNAMKLFEQMPARNRVTWNTMLTILVQSNNLNEARRLFLAM 340
KN++T T + R+ ++++A KLF +MP +N V+WNTM+ Q+ ++ A LF M
Sbjct: 113 KNVVTWTAMVGGYIRSNKISDAEKLFNEMPNKNVVSWNTMIDGYAQNGRIDSAMYLFEKM 172
Query: 341 PKYNSTSYTLMITAFSSGGFVE 406
P+ N S+ +++ + G +E
Sbjct: 173 PERNVVSWNTVMSMLAQCGRIE 194
Score = 55.8 bits (133), Expect = 3e-06
Identities = 28/79 (35%), Positives = 46/79 (58%)
Frame = +2
Query: 161 KNIITCTKKLMQVWRTGELNNAMKLFEQMPARNRVTWNTMLTILVQSNNLNEARRLFLAM 340
+++I+ T + + + G ++ A LF++MP RN V+WN M+T Q+ L+EA LF M
Sbjct: 206 RDVISWTAMIAGLSKNGRIDEARLLFDRMPERNVVSWNAMITGYAQNLRLDEALDLFERM 265
Query: 341 PKYNSTSYTLMITAFSSGG 397
P+ + S+ MIT G
Sbjct: 266 PERDLPSWNTMITGLIQNG 284
>ref|XP_002986825.1| hypothetical protein SELMODRAFT_22884 [Selaginella moellendorffii]
gi|300145479|gb|EFJ12155.1| hypothetical protein
SELMODRAFT_22884 [Selaginella moellendorffii]
Length = 387
Score = 69.3 bits (168), Expect = 3e-10
Identities = 32/79 (40%), Positives = 52/79 (65%)
Frame = +2
Query: 161 KNIITCTKKLMQVWRTGELNNAMKLFEQMPARNRVTWNTMLTILVQSNNLNEARRLFLAM 340
K++I+ + + G+ +A KLF+ MP +N V+W TM+T L +S L EAR +F +M
Sbjct: 29 KSVISWNSMITAYAQHGQTADARKLFDSMPIKNVVSWTTMITGLGKSGGLREAREVFQSM 88
Query: 341 PKYNSTSYTLMITAFSSGG 397
P+ N+ SYT+M+TA++ G
Sbjct: 89 PRKNAASYTMMLTAYAQTG 107
>ref|XP_002322556.1| predicted protein [Populus trichocarpa] gi|222867186|gb|EEF04317.1|
predicted protein [Populus trichocarpa]
Length = 702
Score = 68.6 bits (166), Expect = 5e-10
Identities = 32/85 (37%), Positives = 52/85 (61%)
Frame = +2
Query: 152 LVHKNIITCTKKLMQVWRTGELNNAMKLFEQMPARNRVTWNTMLTILVQSNNLNEARRLF 331
+ KN +T + + G +N A LF++MP RN V+WNTM++ + + +EA +LF
Sbjct: 1 MAEKNTVTYNSMISVYAKNGRINAARNLFDKMPRRNLVSWNTMVSGYLHNGKFDEAYKLF 60
Query: 332 LAMPKYNSTSYTLMITAFSSGGFVE 406
+ MP+ + S+TLMIT ++ G VE
Sbjct: 61 VIMPRRDLFSWTLMITCYTRNGEVE 85
Score = 62.0 bits (149), Expect = 5e-08
Identities = 29/74 (39%), Positives = 46/74 (62%)
Frame = +2
Query: 164 NIITCTKKLMQVWRTGELNNAMKLFEQMPARNRVTWNTMLTILVQSNNLNEARRLFLAMP 343
N+++ L R G + + +LF+QMP+RN V+WN M++ VQ ++EA RLF MP
Sbjct: 194 NVVSWVTMLSGFARNGNILESRRLFDQMPSRNIVSWNAMISAYVQRCEIDEASRLFEEMP 253
Query: 344 KYNSTSYTLMITAF 385
+ +S S+T MI +
Sbjct: 254 ERDSVSWTTMINGY 267
>ref|XP_002870540.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata] gi|297316376|gb|EFH46799.1|
pentatricopeptide repeat-containing protein [Arabidopsis
lyrata subsp. lyrata]
Length = 547
Score = 68.2 bits (165), Expect = 7e-10
Identities = 32/83 (38%), Positives = 53/83 (63%)
Frame = +2
Query: 149 DLVHKNIITCTKKLMQVWRTGELNNAMKLFEQMPARNRVTWNTMLTILVQSNNLNEARRL 328
++ +N+++ T ++ ++GEL A ++F+ MP RN TWN ++ LV+S +L AR+L
Sbjct: 167 EMPERNVVSWTALIVAYVKSGELEEAKRMFDLMPERNLGTWNALVDGLVKSGDLVNARKL 226
Query: 329 FLAMPKYNSTSYTLMITAFSSGG 397
F MPK + SYT MI ++ GG
Sbjct: 227 FDEMPKRDIISYTSMIDGYAKGG 249
>ref|XP_002520592.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis] gi|223540252|gb|EEF41825.1| pentatricopeptide
repeat-containing protein, putative [Ricinus communis]
Length = 525
Score = 68.2 bits (165), Expect = 7e-10
Identities = 33/78 (42%), Positives = 49/78 (62%)
Frame = +2
Query: 164 NIITCTKKLMQVWRTGELNNAMKLFEQMPARNRVTWNTMLTILVQSNNLNEARRLFLAMP 343
NI++ L R G+L A +LF+QMP++N V+WN M++ VQS ++EA +LF MP
Sbjct: 194 NIVSWVTMLYGFARKGKLLEARRLFDQMPSKNVVSWNAMISAYVQSRQIDEAEKLFEEMP 253
Query: 344 KYNSTSYTLMITAFSSGG 397
K +S S+T MI + G
Sbjct: 254 KRDSVSWTTMINGYVRAG 271
Score = 66.2 bits (160), Expect = 3e-09
Identities = 30/82 (36%), Positives = 51/82 (62%)
Frame = +2
Query: 161 KNIITCTKKLMQVWRTGELNNAMKLFEQMPARNRVTWNTMLTILVQSNNLNEARRLFLAM 340
+N +T + + G + +A LF++MP RN V+WNTM+ + +N ++EA LF+ M
Sbjct: 4 RNTVTYNSMISAYAKNGRVIDARVLFDKMPCRNLVSWNTMIAGYLHNNKVDEAYELFVKM 63
Query: 341 PKYNSTSYTLMITAFSSGGFVE 406
P+ + S+TLMIT ++ G +E
Sbjct: 64 PRRDLFSWTLMITCYTQNGMLE 85