BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00017216
         (1250 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002276647.1| PREDICTED: chlorophyll a-b binding protein o...   503   e-140
ref|XP_004145567.1| PREDICTED: chlorophyll a-b binding protein o...   491   e-136
ref|XP_004169873.1| PREDICTED: chlorophyll a-b binding protein o...   490   e-136
ref|XP_002307004.1| light-harvesting complex II protein Lhcb7 [P...   489   e-136
ref|XP_002510744.1| chlorophyll A/B binding protein, putative [R...   486   e-135

>ref|XP_002276647.1| PREDICTED: chlorophyll a-b binding protein of LHCII type I,
            chloroplastic [Vitis vinifera]
            gi|297745621|emb|CBI40786.3| unnamed protein product
            [Vitis vinifera]
          Length = 331

 Score =  503 bits (1296), Expect = e-140
 Identities = 243/319 (76%), Positives = 267/319 (83%), Gaps = 3/319 (0%)
 Frame = -3

Query: 1188 SPSSSHSCLFG---YRLLSKXXXXXXXXXXXXXXXXTCRASWQELAGVLVFSAIPFTAVK 1018
            S SSS S  FG   +RL SK                 C+ASWQELAGVL+FSAIPFTAVK
Sbjct: 8    SVSSSSSSFFGGYRHRLCSKISWPKSRNVNSTSTYSGCKASWQELAGVLIFSAIPFTAVK 67

Query: 1017 AIANSSLGATLQKRLMETKASAVLNSSNFNASAQKAREYSFWYGDERPRWLGPIPYDYPA 838
            AIANS LG +LQ R+ E K +AV NSS F A A+KA+  S WYG+ERPRWLGPIPYDYPA
Sbjct: 68   AIANSPLGESLQSRMEENKKAAVKNSSKFKALAEKAKNESLWYGEERPRWLGPIPYDYPA 127

Query: 837  YLTGELPGDYGFDVLGLSQDPVAFHKYFNFEILHARWAMLASLGALVPELLDLSGVVHFI 658
            YLTGELPGDYGFD+ GL +DPVAF KYFNFEILHARWAMLA+LGAL+PELLDL G  HF+
Sbjct: 128  YLTGELPGDYGFDIAGLGKDPVAFQKYFNFEILHARWAMLAALGALLPELLDLLGAFHFV 187

Query: 657  EPVWWRVGYAKLKGDTLDYLGIPGLHIAGSQGVIVIAVCQALLMVGPEYARYCGIEALEP 478
            EPVWWRVGY+KLKGDTLDYLGIPG H AGSQGVIVIA+CQALLMVGPEYARYCGIEALEP
Sbjct: 188  EPVWWRVGYSKLKGDTLDYLGIPGFHFAGSQGVIVIAICQALLMVGPEYARYCGIEALEP 247

Query: 477  LGIYLPGDLNYPGGILFDPLGLSKDPVAFEELKVKEIKNGRLAMIAWLGFSLQAAITGKG 298
            LGIYLPGD+NYPGG LFDPL LSKDPVAFEELKVKEIKNGRLAM+AWLGF +QAA TGKG
Sbjct: 248  LGIYLPGDINYPGGALFDPLNLSKDPVAFEELKVKEIKNGRLAMVAWLGFYIQAAATGKG 307

Query: 297  PILNLLEHISDPFHKNVLS 241
            P+ NLL+H++DPFH N+LS
Sbjct: 308  PVQNLLDHLADPFHNNLLS 326


>ref|XP_004145567.1| PREDICTED: chlorophyll a-b binding protein of LHCII type I,
            chloroplastic-like [Cucumis sativus]
          Length = 338

 Score =  491 bits (1265), Expect = e-136
 Identities = 229/282 (81%), Positives = 256/282 (90%)
 Frame = -3

Query: 1086 CRASWQELAGVLVFSAIPFTAVKAIANSSLGATLQKRLMETKASAVLNSSNFNASAQKAR 907
            CRASWQELAGVL+FSAIPFTAVKAIANS LG +LQ++L + K SAV NSS F A A++AR
Sbjct: 49   CRASWQELAGVLIFSAIPFTAVKAIANSPLGGSLQRQLEKKKNSAVANSSKFKALAEEAR 108

Query: 906  EYSFWYGDERPRWLGPIPYDYPAYLTGELPGDYGFDVLGLSQDPVAFHKYFNFEILHARW 727
            + S WYG+ERPRWLGP+PYDYP YLTGELPGDYGFD+ GLS+DPVAF K+FNFEILHARW
Sbjct: 109  KDSSWYGEERPRWLGPLPYDYPKYLTGELPGDYGFDIAGLSEDPVAFQKFFNFEILHARW 168

Query: 726  AMLASLGALVPELLDLSGVVHFIEPVWWRVGYAKLKGDTLDYLGIPGLHIAGSQGVIVIA 547
            AMLASLGALVPE+LD+ G  HF EP+WWRVGY+KLKGDTLDYLGIPGLH+AGSQGVIVIA
Sbjct: 169  AMLASLGALVPEILDIFGAFHFTEPIWWRVGYSKLKGDTLDYLGIPGLHLAGSQGVIVIA 228

Query: 546  VCQALLMVGPEYARYCGIEALEPLGIYLPGDLNYPGGILFDPLGLSKDPVAFEELKVKEI 367
            +CQA+LMVGPEYARYCGIEALEPLGIYLPGD+NYPGG+LFDPL LSKD  AFEELKVKEI
Sbjct: 229  ICQAILMVGPEYARYCGIEALEPLGIYLPGDINYPGGVLFDPLNLSKDAAAFEELKVKEI 288

Query: 366  KNGRLAMIAWLGFSLQAAITGKGPILNLLEHISDPFHKNVLS 241
            KNGRLAM+AWLGF  QAA+TGKGP+ NLL+HI+DPFH N LS
Sbjct: 289  KNGRLAMVAWLGFYSQAALTGKGPVQNLLDHIADPFHNNFLS 330


>ref|XP_004169873.1| PREDICTED: chlorophyll a-b binding protein of LHCII type I,
            chloroplastic-like [Cucumis sativus]
          Length = 338

 Score =  490 bits (1261), Expect = e-136
 Identities = 229/282 (81%), Positives = 255/282 (90%)
 Frame = -3

Query: 1086 CRASWQELAGVLVFSAIPFTAVKAIANSSLGATLQKRLMETKASAVLNSSNFNASAQKAR 907
            CRASWQELAGVL+FSAIPFTAVKAIANS LG +LQ++L + K SAV NSS F A A++AR
Sbjct: 49   CRASWQELAGVLIFSAIPFTAVKAIANSPLGGSLQRQLEKKKNSAVANSSKFKALAEEAR 108

Query: 906  EYSFWYGDERPRWLGPIPYDYPAYLTGELPGDYGFDVLGLSQDPVAFHKYFNFEILHARW 727
            + S WYG+ERPRWLGP+PYDYP YLTGELPGDYGFD+ GLS+DPVAF K+FNFEILHARW
Sbjct: 109  KDSSWYGEERPRWLGPLPYDYPKYLTGELPGDYGFDIAGLSEDPVAFQKFFNFEILHARW 168

Query: 726  AMLASLGALVPELLDLSGVVHFIEPVWWRVGYAKLKGDTLDYLGIPGLHIAGSQGVIVIA 547
            AMLASLGALVPE+LD+ G  HF EP+WWRVGY+KLKGDTLDYLGIPGLH+AGSQGVIVIA
Sbjct: 169  AMLASLGALVPEILDIFGAFHFTEPIWWRVGYSKLKGDTLDYLGIPGLHLAGSQGVIVIA 228

Query: 546  VCQALLMVGPEYARYCGIEALEPLGIYLPGDLNYPGGILFDPLGLSKDPVAFEELKVKEI 367
            +CQA+LMVGPEYARYCGIEALEPLGIYLPGD+NYPGG+LFDPL LSKD  AFEELKVKEI
Sbjct: 229  ICQAILMVGPEYARYCGIEALEPLGIYLPGDINYPGGVLFDPLNLSKDAEAFEELKVKEI 288

Query: 366  KNGRLAMIAWLGFSLQAAITGKGPILNLLEHISDPFHKNVLS 241
            KNGRLAM+AWLGF  QAA+TGKGP+ NLL HI+DPFH N LS
Sbjct: 289  KNGRLAMVAWLGFYSQAALTGKGPVQNLLNHIADPFHNNFLS 330


>ref|XP_002307004.1| light-harvesting complex II protein Lhcb7 [Populus trichocarpa]
            gi|222856453|gb|EEE94000.1| light-harvesting complex II
            protein Lhcb7 [Populus trichocarpa]
          Length = 338

 Score =  489 bits (1259), Expect = e-136
 Identities = 229/282 (81%), Positives = 254/282 (90%)
 Frame = -3

Query: 1086 CRASWQELAGVLVFSAIPFTAVKAIANSSLGATLQKRLMETKASAVLNSSNFNASAQKAR 907
            C+ASWQELAGV++FSAIPFTAVKAIANS LG +LQ+RL E K  AV  SS F A AQKAR
Sbjct: 52   CKASWQELAGVVIFSAIPFTAVKAIANSPLGESLQRRLEERKKLAVQQSSKFKALAQKAR 111

Query: 906  EYSFWYGDERPRWLGPIPYDYPAYLTGELPGDYGFDVLGLSQDPVAFHKYFNFEILHARW 727
            + SFWYG+ERPRWLGPI Y YP YL+GELPGDYGFDV GL++DPVAF +YFNFEILHARW
Sbjct: 112  KESFWYGEERPRWLGPISYQYPTYLSGELPGDYGFDVAGLAEDPVAFQRYFNFEILHARW 171

Query: 726  AMLASLGALVPELLDLSGVVHFIEPVWWRVGYAKLKGDTLDYLGIPGLHIAGSQGVIVIA 547
            AMLA+LGAL+PE+LDLSG  HFIEPVWWRVGY+KLKGDTLDYLGIPGLH AG QGV+VIA
Sbjct: 172  AMLAALGALIPEVLDLSGAFHFIEPVWWRVGYSKLKGDTLDYLGIPGLHFAGGQGVLVIA 231

Query: 546  VCQALLMVGPEYARYCGIEALEPLGIYLPGDLNYPGGILFDPLGLSKDPVAFEELKVKEI 367
             CQA+LMVGPEYARYCGIEALEPLGIYLPGD+NYPGGILFDPL LSKDPV+FEELKVKEI
Sbjct: 232  FCQAILMVGPEYARYCGIEALEPLGIYLPGDINYPGGILFDPLNLSKDPVSFEELKVKEI 291

Query: 366  KNGRLAMIAWLGFSLQAAITGKGPILNLLEHISDPFHKNVLS 241
            KNGRLAM+AWLGF +QAA+TGKGP+ NL+EHISDP H N+ S
Sbjct: 292  KNGRLAMVAWLGFYIQAALTGKGPVENLVEHISDPLHNNLFS 333


>ref|XP_002510744.1| chlorophyll A/B binding protein, putative [Ricinus communis]
            gi|223551445|gb|EEF52931.1| chlorophyll A/B binding
            protein, putative [Ricinus communis]
          Length = 329

 Score =  486 bits (1251), Expect = e-135
 Identities = 231/281 (82%), Positives = 251/281 (89%)
 Frame = -3

Query: 1086 CRASWQELAGVLVFSAIPFTAVKAIANSSLGATLQKRLMETKASAVLNSSNFNASAQKAR 907
            C+ASWQELAGVLVFSAIPFTAVKA+ANS LG +LQ+RL E+K  AV  SS F A   KAR
Sbjct: 43   CKASWQELAGVLVFSAIPFTAVKALANSPLGESLQRRLEESKKVAVKESSKFQALTAKAR 102

Query: 906  EYSFWYGDERPRWLGPIPYDYPAYLTGELPGDYGFDVLGLSQDPVAFHKYFNFEILHARW 727
            + S WYG+ERPRWLGPIPYDYPAYLTGELPGDYGFDV GLS+D VAF +YFNFEILHARW
Sbjct: 103  KESLWYGEERPRWLGPIPYDYPAYLTGELPGDYGFDVAGLSKDSVAFQRYFNFEILHARW 162

Query: 726  AMLASLGALVPELLDLSGVVHFIEPVWWRVGYAKLKGDTLDYLGIPGLHIAGSQGVIVIA 547
            AMLA+LGAL PE+LDLSG  HFIEPVWWRVGY+KLKGDTLDYLGIPGLH AGSQGV+VIA
Sbjct: 163  AMLAALGALAPEVLDLSGAFHFIEPVWWRVGYSKLKGDTLDYLGIPGLHFAGSQGVLVIA 222

Query: 546  VCQALLMVGPEYARYCGIEALEPLGIYLPGDLNYPGGILFDPLGLSKDPVAFEELKVKEI 367
            +CQALLMVGPEYARYCGIEALEPLGIYLPGD+NYPGG LFDPL LS D VA EELKVKEI
Sbjct: 223  ICQALLMVGPEYARYCGIEALEPLGIYLPGDINYPGGPLFDPLNLSSDAVALEELKVKEI 282

Query: 366  KNGRLAMIAWLGFSLQAAITGKGPILNLLEHISDPFHKNVL 244
            KNGRLAM+AWLGF  QAA+TGKGP+ NL+EHISDPFH N+L
Sbjct: 283  KNGRLAMVAWLGFYAQAALTGKGPVQNLVEHISDPFHNNLL 323